Stderr output

<core_client_version>7.24.1</core_client_version>
<![CDATA[
<stderr_txt>
12:55:35 (1633878): wrapper (7.7.26015): starting
12:55:35 (1633878): wrapper: running run_atlas (--nthreads 4)
[2025-11-04 12:55:35] Arguments: --nthreads 4
[2025-11-04 12:55:35] Threads: 4
[2025-11-04 12:55:35] Checking for CVMFS
[2025-11-04 12:55:35] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-04 12:55:35] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-04 12:55:35] Running cvmfs_config stat atlas.cern.ch
[2025-11-04 12:55:35] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-04 12:55:35] 2.13.2.0 1631499 0 27316 152499 3 10 2429985 4096000 25 130560 0 6161 99.840 2723 546 http://s1fnal-cvmfs.openhtc.io:8080/cvmfs/atlas.cern.ch DIRECT 1
[2025-11-04 12:55:35] CVMFS is ok
[2025-11-04 12:55:35] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-04 12:55:35] Small home clusters do not require a local http proxy but it is suggested if
[2025-11-04 12:55:35] more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
[2025-11-04 12:55:35] Further information can be found at the LHC@home message board.
[2025-11-04 12:55:35] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-04 12:55:35] Checking for apptainer binary...
[2025-11-04 12:55:35] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-04 12:55:35] Running /usr/bin/apptainer --version
[2025-11-04 12:55:35] apptainer version 1.4.3
[2025-11-04 12:55:35] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-04 12:55:35] x670aorus
[2025-11-04 12:55:35] apptainer works
[2025-11-04 12:55:35] Set ATHENA_PROC_NUMBER=4
[2025-11-04 12:55:35] Set ATHENA_CORE_NUMBER=4
[2025-11-04 12:55:35] Starting ATLAS job with PandaID=6864761077
[2025-11-04 12:55:35] Running command: /usr/bin/apptainer exec -B /cvmfs,/home/x670aorus/boinc3/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-04 13:42:52]  *** The last 200 lines of the pilot log: ***
[2025-11-04 13:42:52] 2025-11-04 20:41:54,723 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-11-04 13:42:52] 2025-11-04 20:41:54,723 | INFO     | summary of transferred files:
[2025-11-04 13:42:52] 2025-11-04 20:41:54,723 | INFO     |  -- lfn=log.47081490._015621.job.log.tgz.1, status_code=0, status=transferred
[2025-11-04 13:42:52] 2025-11-04 20:41:54,723 | INFO     | stage-out finished correctly
[2025-11-04 13:42:52] 2025-11-04 20:41:54,745 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-11-04 13:42:52] 2025-11-04 20:41:55,417 | INFO     | time since job start (2772s) is within the limit (172800.0s)
[2025-11-04 13:42:52] 2025-11-04 20:41:56,821 | INFO     | job 6864761077 has state=finished
[2025-11-04 13:42:52] 2025-11-04 20:41:56,821 | INFO     | preparing for final server update for job 6864761077 in state='finished'
[2025-11-04 13:42:52] 2025-11-04 20:41:56,821 | INFO     | this job has now completed (state=finished)
[2025-11-04 13:42:52] 2025-11-04 20:41:56,822 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-11-04 13:42:52] 2025-11-04 20:41:56,822 | INFO     | log transfer has been attempted: DONE
[2025-11-04 13:42:52] 2025-11-04 20:41:56,822 | INFO     | job 6864761077 has finished - writing final server update
[2025-11-04 13:42:52] 2025-11-04 20:41:56,822 | INFO     | total number of processed events: 400 (read)
[2025-11-04 13:42:52] 2025-11-04 20:41:56,822 | INFO     | executing command: lscpu
[2025-11-04 13:42:52] 2025-11-04 20:41:56,835 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-11-04 13:42:52] 2025-11-04 20:41:57,423 | INFO     | time since job start (2774s) is within the limit (172800.0s)
[2025-11-04 13:42:52] 2025-11-04 20:41:59,291 | WARNING  | process 1652910 can no longer be monitored (due to stat problems) - aborting
[2025-11-04 13:42:52] 2025-11-04 20:41:59,291 | INFO     | using path: /home/x670aorus/boinc3/slots/1/PanDA_Pilot-6864761077/memory_monitor_summary.json (trf name=prmon)
[2025-11-04 13:42:52] 2025-11-04 20:41:59,292 | INFO     | using path: /home/x670aorus/boinc3/slots/1/PanDA_Pilot-6864761077/memory_monitor_summary.json (trf name=prmon)
[2025-11-04 13:42:52] 2025-11-04 20:41:59,292 | WARNING  | memory limits not set in config, using defaults: 'NoneType' object has no attribute 'get'
[2025-11-04 13:42:52] 2025-11-04 20:41:59,292 | WARNING  | maxPSS not found in memory monitor output
[2025-11-04 13:42:52] 2025-11-04 20:41:59,292 | INFO     | payload log (log.EVNTtoHITS) within allowed size limit (2147483648 B): 2677536 B
[2025-11-04 13:42:52] 2025-11-04 20:41:59,292 | INFO     | payload log (payload.stdout) within allowed size limit (2147483648 B): 15317 B
[2025-11-04 13:42:52] 2025-11-04 20:41:59,292 | INFO     | executing command: df -mP /home/x670aorus/boinc3/slots/1
[2025-11-04 13:42:52] 2025-11-04 20:41:59,429 | INFO     | time since job start (2776s) is within the limit (172800.0s)
[2025-11-04 13:42:52] 2025-11-04 20:42:01,434 | INFO     | time since job start (2778s) is within the limit (172800.0s)
[2025-11-04 13:42:52] 2025-11-04 20:42:01,434 | INFO     | 2782s have passed since pilot start - server update state is 'UPDATING_FINAL'
[2025-11-04 13:42:52] 2025-11-04 20:42:01,557 | INFO     | CPU arch script returned: x86-64-v4
[2025-11-04 13:42:52] 2025-11-04 20:42:01,562 | INFO     | found 16 cores (16 cores per socket, 1 socket) HT, CPU MHz: 3638.9808437499996
[2025-11-04 13:42:52] 2025-11-04 20:42:01,563 | INFO     | sufficient remaining disk space (754766053376 B)
[2025-11-04 13:42:52] 2025-11-04 20:42:01,563 | INFO     | work directory size check will use 2537553920 B as a max limit (10% grace limit added)
[2025-11-04 13:42:52] 2025-11-04 20:42:01,564 | INFO     | size of work directory /home/x670aorus/boinc3/slots/1/PanDA_Pilot-6864761077: 2963379 B (within 2537553920 B limit)
[2025-11-04 13:42:52] 2025-11-04 20:42:01,564 | INFO     | pfn file=/home/x670aorus/boinc3/slots/1/PanDA_Pilot-6864761077/HITS.47081490._015621.pool.root.1 does not exist (skip from workdir size calculation)
[2025-11-04 13:42:52] 2025-11-04 20:42:01,564 | INFO     | total size of present files: 0 B (workdir size: 2963379 B)
[2025-11-04 13:42:52] 2025-11-04 20:42:01,564 | INFO     | output file size check: skipping output file /home/x670aorus/boinc3/slots/1/PanDA_Pilot-6864761077/HITS.47081490._015621.pool.root.1 since it does not exist
[2025-11-04 13:42:52] 2025-11-04 20:42:01,565 | INFO     | using path: /home/x670aorus/boinc3/slots/1/PanDA_Pilot-6864761077/memory_monitor_summary.json (trf name=prmon)
[2025-11-04 13:42:52] 2025-11-04 20:42:01,566 | INFO     | extracted standard info from prmon json
[2025-11-04 13:42:52] 2025-11-04 20:42:01,566 | INFO     | extracted standard memory fields from prmon json
[2025-11-04 13:42:52] 2025-11-04 20:42:01,566 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-04 13:42:52] 2025-11-04 20:42:01,566 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-11-04 13:42:52] 2025-11-04 20:42:01,566 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-11-04 13:42:52] 2025-11-04 20:42:01,567 | INFO     | fitting pss+swap vs Time
[2025-11-04 13:42:52] 2025-11-04 20:42:01,567 | INFO     | sum of square deviations: 18381740.0
[2025-11-04 13:42:52] 2025-11-04 20:42:01,567 | INFO     | sum of deviations: -1380150132.0
[2025-11-04 13:42:52] 2025-11-04 20:42:01,567 | INFO     | mean x: 1762287624.0
[2025-11-04 13:42:52] 2025-11-04 20:42:01,567 | INFO     | mean y: 2369087.1025641025
[2025-11-04 13:42:52] 2025-11-04 20:42:01,567 | INFO     | -- intersect: 132319630504.44208
[2025-11-04 13:42:52] 2025-11-04 20:42:01,567 | INFO     | intersect: 132319630504.44208
[2025-11-04 13:42:52] 2025-11-04 20:42:01,567 | INFO     | chi2: 0.009231108573591823
[2025-11-04 13:42:52] 2025-11-04 20:42:01,567 | INFO     | -- intersect: 132319630504.44208
[2025-11-04 13:42:52] 2025-11-04 20:42:01,567 | INFO     | current memory leak: -75.08 B/s (using 39 data points, chi2=0.01)
[2025-11-04 13:42:52] 2025-11-04 20:42:01,567 | INFO     | could have reported an average CPU frequency of 4207 MHz (5 samples)
[2025-11-04 13:42:52] 2025-11-04 20:42:01,567 | INFO     | ..............................
[2025-11-04 13:42:52] 2025-11-04 20:42:01,568 | INFO     | . Timing measurements:
[2025-11-04 13:42:52] 2025-11-04 20:42:01,568 | INFO     | . get job = 0 s
[2025-11-04 13:42:52] 2025-11-04 20:42:01,568 | INFO     | . initial setup = 4 s
[2025-11-04 13:42:52] 2025-11-04 20:42:01,568 | INFO     | . payload setup = 2 s
[2025-11-04 13:42:52] 2025-11-04 20:42:01,568 | INFO     | . stage-in = 0 s
[2025-11-04 13:42:52] 2025-11-04 20:42:01,568 | INFO     | . payload execution = 2752 s
[2025-11-04 13:42:52] 2025-11-04 20:42:01,568 | INFO     | . stage-out = 0 s
[2025-11-04 13:42:52] 2025-11-04 20:42:01,568 | INFO     | . log creation = 0 s
[2025-11-04 13:42:52] 2025-11-04 20:42:01,568 | INFO     | ..............................
[2025-11-04 13:42:52] 2025-11-04 20:42:01,593 | INFO     | 
[2025-11-04 13:42:52] 2025-11-04 20:42:01,593 | INFO     | job summary report
[2025-11-04 13:42:52] 2025-11-04 20:42:01,593 | INFO     | --------------------------------------------------
[2025-11-04 13:42:52] 2025-11-04 20:42:01,593 | INFO     | PanDA job id: 6864761077
[2025-11-04 13:42:52] 2025-11-04 20:42:01,593 | INFO     | task id: 47081490
[2025-11-04 13:42:52] 2025-11-04 20:42:01,594 | INFO     | errors: (none)
[2025-11-04 13:42:52] 2025-11-04 20:42:01,594 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-04 13:42:52] 2025-11-04 20:42:01,594 | INFO     | pilot state: finished 
[2025-11-04 13:42:52] 2025-11-04 20:42:01,594 | INFO     | transexitcode: 0
[2025-11-04 13:42:52] 2025-11-04 20:42:01,594 | INFO     | exeerrorcode: 0
[2025-11-04 13:42:52] 2025-11-04 20:42:01,594 | INFO     | exeerrordiag: 
[2025-11-04 13:42:52] 2025-11-04 20:42:01,594 | INFO     | exitcode: 0
[2025-11-04 13:42:52] 2025-11-04 20:42:01,594 | INFO     | exitmsg: OK
[2025-11-04 13:42:52] 2025-11-04 20:42:01,594 | INFO     | cpuconsumptiontime: 10564 s
[2025-11-04 13:42:52] 2025-11-04 20:42:01,594 | INFO     | nevents: 400
[2025-11-04 13:42:52] 2025-11-04 20:42:01,594 | INFO     | neventsw: 0
[2025-11-04 13:42:52] 2025-11-04 20:42:01,594 | INFO     | pid: 1652910
[2025-11-04 13:42:52] 2025-11-04 20:42:01,594 | INFO     | pgrp: 1652910
[2025-11-04 13:42:52] 2025-11-04 20:42:01,594 | INFO     | corecount: 4
[2025-11-04 13:42:52] 2025-11-04 20:42:01,594 | INFO     | event service: False
[2025-11-04 13:42:52] 2025-11-04 20:42:01,594 | INFO     | sizes: {0: 2348781, 2: 2349157, 11: 2349185, 2758: 2374553, 2760: 2383623, 2767: 2383821}
[2025-11-04 13:42:52] 2025-11-04 20:42:01,594 | INFO     | --------------------------------------------------
[2025-11-04 13:42:52] 2025-11-04 20:42:01,594 | INFO     | 
[2025-11-04 13:42:52] 2025-11-04 20:42:01,594 | INFO     | executing command: ls -lF /home/x670aorus/boinc3/slots/1
[2025-11-04 13:42:52] 2025-11-04 20:42:01,603 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-04 13:42:52] 2025-11-04 20:42:01,603 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-04 13:42:52] 2025-11-04 20:42:01,603 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-04 13:42:52] 2025-11-04 20:42:01,603 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-04 13:42:52] 2025-11-04 20:42:01,603 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-04 13:42:52] 2025-11-04 20:42:01,603 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-04 13:42:52] 2025-11-04 20:42:01,603 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-04 13:42:52] 2025-11-04 20:42:01,603 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-04 13:42:52] 2025-11-04 20:42:01,603 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-04 13:42:52] 2025-11-04 20:42:01,603 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-04 13:42:52] 2025-11-04 20:42:01,603 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-04 13:42:52] 2025-11-04 20:42:01,603 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-04 13:42:52] 2025-11-04 20:42:01,603 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-04 13:42:52] 2025-11-04 20:42:01,603 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-04 13:42:52] 2025-11-04 20:42:01,603 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-04 13:42:52] 2025-11-04 20:42:01,604 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-04 13:42:52] 2025-11-04 20:42:01,604 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-04 13:42:52] 2025-11-04 20:42:01,604 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-04 13:42:52] 2025-11-04 20:42:01,604 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-04 13:42:52] 2025-11-04 20:42:01,604 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-04 13:42:52] 2025-11-04 20:42:01,604 | INFO     | job 6864761077 has completed (purged errors)
[2025-11-04 13:42:52] 2025-11-04 20:42:01,604 | INFO     | overall cleanup function is called
[2025-11-04 13:42:52] 2025-11-04 20:42:01,652 | INFO     | number of running child processes to parent process 1652910: 1
[2025-11-04 13:42:52] 2025-11-04 20:42:01,653 | INFO     | maximum number of monitored processes: 6
[2025-11-04 13:42:52] 2025-11-04 20:42:01,653 | INFO     | aborting job monitoring since job object (job id=6864761077) has expired
[2025-11-04 13:42:52] 2025-11-04 20:42:02,611 | INFO     | --- collectZombieJob: --- 10, [1652910]
[2025-11-04 13:42:52] 2025-11-04 20:42:02,611 | INFO     | zombie collector waiting for pid 1652910
[2025-11-04 13:42:52] 2025-11-04 20:42:02,611 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-04 13:42:52] 2025-11-04 20:42:02,611 | INFO     | collected zombie processes
[2025-11-04 13:42:52] 2025-11-04 20:42:02,611 | INFO     | will attempt to kill all subprocesses of pid=1652910
[2025-11-04 13:42:52] 2025-11-04 20:42:02,666 | INFO     | process IDs to be killed: [1652910] (in reverse order)
[2025-11-04 13:42:52] 2025-11-04 20:42:02,694 | WARNING  | found no corresponding commands to process id(s)
[2025-11-04 13:42:52] 2025-11-04 20:42:02,694 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-04 13:42:52] 2025-11-04 20:42:02,696 | INFO     | did not find any defunct processes belonging to 1652910
[2025-11-04 13:42:52] 2025-11-04 20:42:02,697 | INFO     | did not find any defunct processes belonging to 1652910
[2025-11-04 13:42:52] 2025-11-04 20:42:02,697 | INFO     | ready for new job
[2025-11-04 13:42:52] 2025-11-04 20:42:02,698 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-04 13:42:52] 2025-11-04 20:42:02,698 | INFO     | ***************************************
[2025-11-04 13:42:52] 2025-11-04 20:42:02,698 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-11-04 13:42:52] 2025-11-04 20:42:02,698 | INFO     | ***************************************
[2025-11-04 13:42:52] 2025-11-04 20:42:02,698 | INFO     | 
[2025-11-04 13:42:52] 2025-11-04 20:42:02,699 | INFO     | architecture information:
[2025-11-04 13:42:52] 2025-11-04 20:42:02,699 | INFO     | executing command: cat /etc/os-release
[2025-11-04 13:42:52] 2025-11-04 20:42:02,705 | INFO     | cat /etc/os-release:
[2025-11-04 13:42:52] NAME="CentOS Linux"
[2025-11-04 13:42:52] VERSION="7 (Core)"
[2025-11-04 13:42:52] ID="centos"
[2025-11-04 13:42:52] ID_LIKE="rhel fedora"
[2025-11-04 13:42:52] VERSION_ID="7"
[2025-11-04 13:42:52] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-04 13:42:52] ANSI_COLOR="0;31"
[2025-11-04 13:42:52] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-04 13:42:52] HOME_URL="https://www.centos.org/"
[2025-11-04 13:42:52] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-04 13:42:52] 
[2025-11-04 13:42:52] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-04 13:42:52] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-04 13:42:52] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-04 13:42:52] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-04 13:42:52] 
[2025-11-04 13:42:52] 2025-11-04 20:42:02,705 | INFO     | ***************************************
[2025-11-04 13:42:52] 2025-11-04 20:42:03,206 | INFO     | executing command: df -mP /home/x670aorus/boinc3/slots/1
[2025-11-04 13:42:52] 2025-11-04 20:42:03,217 | INFO     | sufficient remaining disk space (754770247680 B)
[2025-11-04 13:42:52] 2025-11-04 20:42:03,217 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-04 13:42:52] 2025-11-04 20:42:03,217 | INFO     | current server update state: UPDATING_FINAL
[2025-11-04 13:42:52] 2025-11-04 20:42:03,217 | INFO     | update_server=False
[2025-11-04 13:42:52] 2025-11-04 20:42:03,217 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-04 13:42:52] 2025-11-04 20:42:03,217 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-11-04 13:42:52] 2025-11-04 20:42:03,218 | INFO     | found 0 job(s) in 20 queues
[2025-11-04 13:42:52] 2025-11-04 20:42:03,218 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-04 13:42:52] 2025-11-04 20:42:03,218 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-04 13:42:52] 2025-11-04 20:42:03,218 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-04 13:42:52] 2025-11-04 20:42:03,218 | INFO     | aborting loop
[2025-11-04 13:42:52] 2025-11-04 20:42:03,218 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-04 13:42:52] 2025-11-04 20:42:03,218 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-04 13:42:52] 2025-11-04 20:42:03,336 | INFO     | all data control threads have been joined
[2025-11-04 13:42:52] 2025-11-04 20:42:03,435 | INFO     | all payload control threads have been joined
[2025-11-04 13:42:52] 2025-11-04 20:42:04,222 | INFO     | [job] queue monitor thread has finished
[2025-11-04 13:42:52] 2025-11-04 20:42:04,223 | INFO     | [job] retrieve thread has finished
[2025-11-04 13:42:52] 2025-11-04 20:42:04,223 | INFO     | [job] job monitor thread has finished
[2025-11-04 13:42:52] 2025-11-04 20:42:04,275 | INFO     | [payload] execute_payloads thread has finished
[2025-11-04 13:42:52] 2025-11-04 20:42:04,341 | INFO     | [data] control thread has finished
[2025-11-04 13:42:52] 2025-11-04 20:42:04,357 | INFO     | all job control threads have been joined
[2025-11-04 13:42:52] 2025-11-04 20:42:04,440 | INFO     | [payload] control thread has finished
[2025-11-04 13:42:52] 2025-11-04 20:42:04,789 | INFO     | [payload] failed_post thread has finished
[2025-11-04 13:42:52] 2025-11-04 20:42:05,223 | INFO     | [data] copytool_out thread has finished
[2025-11-04 13:42:52] 2025-11-04 20:42:05,269 | INFO     | [data] copytool_in thread has finished
[2025-11-04 13:42:52] 2025-11-04 20:42:05,273 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-04 13:42:52] 2025-11-04 20:42:05,282 | INFO     | [job] validate thread has finished
[2025-11-04 13:42:52] 2025-11-04 20:42:05,318 | INFO     | [payload] validate_post thread has finished
[2025-11-04 13:42:52] 2025-11-04 20:42:05,324 | INFO     | [job] create_data_payload thread has finished
[2025-11-04 13:42:52] 2025-11-04 20:42:05,363 | INFO     | [job] control thread has finished
[2025-11-04 13:42:52] 2025-11-04 20:42:05,365 | INFO     | [payload] validate_pre thread has finished
[2025-11-04 13:42:52] 2025-11-04 20:42:09,278 | INFO     | [data] queue_monitor thread has finished
[2025-11-04 13:42:52] 2025-11-04 20:42:13,557 | INFO     | job.realtimelogging is not enabled
[2025-11-04 13:42:52] 2025-11-04 20:42:14,563 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-04 13:42:52] 2025-11-04 20:42:46,551 | INFO     | [monitor] cgroup control has ended
[2025-11-04 13:42:52] 2025-11-04 20:42:46,991 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 128871272494912)>', '<ExcThread(monitor, started 128870929905408)>']
[2025-11-04 13:42:52] 2025-11-04 20:42:47,434 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-04 13:42:52] 2025-11-04 20:42:47,434 | INFO     | [monitor] control thread has ended
[2025-11-04 13:42:52] 2025-11-04 20:42:52,015 | INFO     | all workflow threads have been joined
[2025-11-04 13:42:52] 2025-11-04 20:42:52,015 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-04 13:42:52] 2025-11-04 20:42:52,016 | INFO     | traces error code: 0
[2025-11-04 13:42:52] 2025-11-04 20:42:52,016 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-04 13:42:52] 2025-11-04 20:42:52,055 [wrapper] ==== pilot stdout END ====
[2025-11-04 13:42:52] 2025-11-04 20:42:52,056 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-04 13:42:52] 2025-11-04 20:42:52,057 [wrapper] pilotpid: 1639580
[2025-11-04 13:42:52] 2025-11-04 20:42:52,058 [wrapper] Pilot exit status: 0
[2025-11-04 13:42:52] 2025-11-04 20:42:52,061 [wrapper] pandaids: 6864761077
[2025-11-04 13:42:52] 2025-11-04 20:42:52,078 [wrapper] cleanup supervisor_pilot 1699739 1639581
[2025-11-04 13:42:52] 2025-11-04 20:42:52,079 [wrapper] Test setup, not cleaning
[2025-11-04 13:42:52] 2025-11-04 20:42:52,079 [wrapper] apfmon messages muted
[2025-11-04 13:42:52] 2025-11-04 20:42:52,080 [wrapper] ==== wrapper stdout END ====
[2025-11-04 13:42:52] 2025-11-04 20:42:52,081 [wrapper] ==== wrapper stderr END ====
[2025-11-04 13:42:52]  *** Error codes and diagnostics ***
[2025-11-04 13:42:52]     "exeErrorCode": 0,
[2025-11-04 13:42:52]     "exeErrorDiag": "",
[2025-11-04 13:42:52]     "pilotErrorCode": 0,
[2025-11-04 13:42:52]     "pilotErrorDiag": "",
[2025-11-04 13:42:52]  *** Listing of results directory ***
[2025-11-04 13:42:52] total 393092
[2025-11-04 13:42:52] -rw-r--r-- 1 x670aorus x670aorus    557409 Oct 29 06:45 pilot3.tar.gz
[2025-11-04 13:42:52] -rwx------ 1 x670aorus x670aorus     36292 Oct 29 06:51 runpilot2-wrapper.sh
[2025-11-04 13:42:52] -rw-r--r-- 1 x670aorus x670aorus      5112 Oct 29 06:51 queuedata.json
[2025-11-04 13:42:52] -rw-rw-r-- 1 x670aorus x670aorus       100 Nov  4 12:55 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-04 13:42:52] -rwxr-xr-x 1 x670aorus x670aorus      7986 Nov  4 12:55 run_atlas
[2025-11-04 13:42:52] -rw-rw-r-- 1 x670aorus x670aorus       105 Nov  4 12:55 job.xml
[2025-11-04 13:42:52] -rw-rw-r-- 1 x670aorus x670aorus      9965 Nov  4 12:55 init_data.xml
[2025-11-04 13:42:52] -rw-r--r-- 2 x670aorus x670aorus 215915564 Nov  4 12:55 EVNT.47081487._000624.pool.root.1
[2025-11-04 13:42:52] -rw-r--r-- 2 x670aorus x670aorus     15120 Nov  4 12:55 start_atlas.sh
[2025-11-04 13:42:52] drwxrwx--x 2 x670aorus x670aorus      4096 Nov  4 12:55 shared
[2025-11-04 13:42:52] -rw-r--r-- 2 x670aorus x670aorus    569670 Nov  4 12:55 input.tar.gz
[2025-11-04 13:42:52] -rw-rw-r-- 1 x670aorus x670aorus         0 Nov  4 12:55 boinc_lockfile
[2025-11-04 13:42:52] -rw-rw-r-- 1 x670aorus x670aorus      2527 Nov  4 12:55 pandaJob.out
[2025-11-04 13:42:52] -rw------- 1 x670aorus x670aorus    985853 Nov  4 12:55 agis_schedconf.cvmfs.json
[2025-11-04 13:42:52] -rw------- 1 x670aorus x670aorus   1560632 Nov  4 12:55 agis_ddmendpoints.agis.ALL.json
[2025-11-04 13:42:52] drwx------ 5 x670aorus x670aorus      4096 Nov  4 12:55 pilot3
[2025-11-04 13:42:52] -rw------- 1 x670aorus x670aorus 181309576 Nov  4 13:41 HITS.47081490._015621.pool.root.1
[2025-11-04 13:42:52] -rw-rw-r-- 1 x670aorus x670aorus       529 Nov  4 13:41 boinc_task_state.xml
[2025-11-04 13:42:52] -rw------- 1 x670aorus x670aorus      1021 Nov  4 13:41 memory_monitor_summary.json
[2025-11-04 13:42:52] -rw------- 1 x670aorus x670aorus    245929 Nov  4 13:41 log.47081490._015621.job.log.tgz.1
[2025-11-04 13:42:52] -rw------- 1 x670aorus x670aorus        95 Nov  4 13:41 pilot_heartbeat.json
[2025-11-04 13:42:52] -rw------- 1 x670aorus x670aorus      7737 Nov  4 13:42 heartbeat.json
[2025-11-04 13:42:52] -rw-rw-r-- 1 x670aorus x670aorus      8192 Nov  4 13:42 boinc_mmap_file
[2025-11-04 13:42:52] -rw-rw-r-- 1 x670aorus x670aorus        27 Nov  4 13:42 wrapper_checkpoint.txt
[2025-11-04 13:42:52] -rw------- 1 x670aorus x670aorus      4633 Nov  4 13:42 pilotlog.txt
[2025-11-04 13:42:52] -rw------- 1 x670aorus x670aorus    442731 Nov  4 13:42 log.47081490._015621.job.log.1
[2025-11-04 13:42:52] -rw------- 1 x670aorus x670aorus       357 Nov  4 13:42 output.list
[2025-11-04 13:42:52] -rw-rw-r-- 1 x670aorus x670aorus       620 Nov  4 13:42 runtime_log
[2025-11-04 13:42:52] -rw------- 1 x670aorus x670aorus    706560 Nov  4 13:42 result.tar.gz
[2025-11-04 13:42:52] -rw-rw-r-- 1 x670aorus x670aorus      8815 Nov  4 13:42 runtime_log.err
[2025-11-04 13:42:52] -rw------- 1 x670aorus x670aorus       654 Nov  4 13:42 cV6NDm9oKY8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmcBHODm5N3p2m.diag
[2025-11-04 13:42:52] -rw-rw-r-- 1 x670aorus x670aorus     22472 Nov  4 13:42 stderr.txt
[2025-11-04 13:42:52] HITS file was successfully produced:
[2025-11-04 13:42:52] -rw------- 1 x670aorus x670aorus 181309576 Nov  4 13:41 shared/HITS.pool.root.1
[2025-11-04 13:42:52]  *** Contents of shared directory: ***
[2025-11-04 13:42:52] total 389196
[2025-11-04 13:42:52] -rw-r--r-- 2 x670aorus x670aorus 215915564 Nov  4 12:55 ATLAS.root_0
[2025-11-04 13:42:52] -rw-r--r-- 2 x670aorus x670aorus     15120 Nov  4 12:55 start_atlas.sh
[2025-11-04 13:42:52] -rw-r--r-- 2 x670aorus x670aorus    569670 Nov  4 12:55 input.tar.gz
[2025-11-04 13:42:52] -rw------- 1 x670aorus x670aorus 181309576 Nov  4 13:41 HITS.pool.root.1
[2025-11-04 13:42:52] -rw------- 1 x670aorus x670aorus    706560 Nov  4 13:42 result.tar.gz
13:42:54 (1633878): run_atlas exited; CPU time 10573.991163
13:42:54 (1633878): called boinc_finish(0)

</stderr_txt>
]]>

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