Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
13:31:23 (1032697): wrapper (7.7.26015): starting
13:31:23 (1032697): wrapper: running run_atlas (--nthreads 8)
[2025-11-01 13:31:23] Arguments: --nthreads 8
[2025-11-01 13:31:23] Threads: 8
[2025-11-01 13:31:23] Checking for CVMFS
[2025-11-01 13:31:23] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-01 13:31:23] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-01 13:31:23] Running cvmfs_config stat atlas.cern.ch
[2025-11-01 13:31:24] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-01 13:31:24] 2.13.2.0 219150 2962 94200 152384 1 13 26065984 40960000 1107 16776704 0 853870 99.049 2417256 58502 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-11-01 13:31:24] CVMFS is ok
[2025-11-01 13:31:24] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-01 13:31:24] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-01 13:31:24] Further information can be found at the LHC@home message board.
[2025-11-01 13:31:24] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-01 13:31:24] Checking for apptainer binary...
[2025-11-01 13:31:24] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-01 13:31:24] Running /usr/bin/apptainer --version
[2025-11-01 13:31:24] apptainer version 1.4.3-1.el9
[2025-11-01 13:31:24] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-01 13:31:24] c6-5-7-4.aglt2.org
[2025-11-01 13:31:24] apptainer works
[2025-11-01 13:31:24] Set ATHENA_PROC_NUMBER=8
[2025-11-01 13:31:24] Set ATHENA_CORE_NUMBER=8
[2025-11-01 13:31:24] Starting ATLAS job with PandaID=6857795776
[2025-11-01 13:31:24] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-01 14:52:03]  *** The last 200 lines of the pilot log: ***
[2025-11-01 14:52:03]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-11-01 14:52:03]  replicas=None
[2025-11-01 14:52:03]  scope=mc23_13p6TeV
[2025-11-01 14:52:03]  status=None
[2025-11-01 14:52:03]  status_code=0
[2025-11-01 14:52:03]  storage_token=
[2025-11-01 14:52:03]  surl=/tmp/boinchome/slots/0/PanDA_Pilot-6857795776/log.46964970._000894.job.log.tgz.1
[2025-11-01 14:52:03]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/b6/38/log.46964970._000894.job.log.tgz.1
[2025-11-01 14:52:03]  workdir=None
[2025-11-01 14:52:03] ]
[2025-11-01 14:52:03] 2025-11-01 18:51:26,988 | INFO     | transferring file log.46964970._000894.job.log.tgz.1 from /tmp/boinchome/slots/0/PanDA_Pilot-6857795776/log.46964970._000894.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-11-01 14:52:03] 2025-11-01 18:51:26,988 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/0/PanDA_Pilot-6857795776/log.46964970._000894.job.log.tgz.1 /tmp/boinchome/slots/0/log.46964970._000894.job
[2025-11-01 14:52:03] 2025-11-01 18:51:27,003 | INFO     | adding to output.list: log.46964970._000894.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/b6/38/log.46964970._000894.job.log.tg
[2025-11-01 14:52:03] 2025-11-01 18:51:27,004 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-11-01 14:52:03] 2025-11-01 18:51:27,004 | INFO     | summary of transferred files:
[2025-11-01 14:52:03] 2025-11-01 18:51:27,004 | INFO     |  -- lfn=log.46964970._000894.job.log.tgz.1, status_code=0, status=transferred
[2025-11-01 14:52:03] 2025-11-01 18:51:27,004 | INFO     | stage-out finished correctly
[2025-11-01 14:52:03] 2025-11-01 18:51:27,066 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-11-01 14:52:03] 2025-11-01 18:51:27,131 | INFO     | job 6857795776 has state=finished
[2025-11-01 14:52:03] 2025-11-01 18:51:27,132 | INFO     | preparing for final server update for job 6857795776 in state='finished'
[2025-11-01 14:52:03] 2025-11-01 18:51:27,132 | INFO     | this job has now completed (state=finished)
[2025-11-01 14:52:03] 2025-11-01 18:51:27,132 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-11-01 14:52:03] 2025-11-01 18:51:27,132 | INFO     | log transfer has been attempted: DONE
[2025-11-01 14:52:03] 2025-11-01 18:51:27,132 | INFO     | job 6857795776 has finished - writing final server update
[2025-11-01 14:52:03] 2025-11-01 18:51:27,133 | INFO     | total number of processed events: 400 (read)
[2025-11-01 14:52:03] 2025-11-01 18:51:27,133 | INFO     | executing command: lscpu
[2025-11-01 14:52:03] 2025-11-01 18:51:27,173 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-11-01 14:52:03] 2025-11-01 18:51:27,920 | INFO     | monitor loop #361: job 0:6857795776 is in state 'finished'
[2025-11-01 14:52:03] 2025-11-01 18:51:27,920 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-01 14:52:03] 2025-11-01 18:51:28,178 | INFO     | time since job start (4795s) is within the limit (172800.0s)
[2025-11-01 14:52:03] 2025-11-01 18:51:30,183 | INFO     | time since job start (4797s) is within the limit (172800.0s)
[2025-11-01 14:52:03] 2025-11-01 18:51:30,423 | INFO     | monitor loop #362: job 0:6857795776 is in state 'finished'
[2025-11-01 14:52:03] 2025-11-01 18:51:30,423 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-01 14:52:03] 2025-11-01 18:51:30,570 | INFO     | CPU arch script returned: x86-64-v4
[2025-11-01 14:52:03] 2025-11-01 18:51:30,578 | INFO     | found 28 cores (14 cores per socket, 2 sockets) HT, CPU MHz: 2905.6107321428576
[2025-11-01 14:52:03] 2025-11-01 18:51:30,587 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6857795776/memory_monitor_summary.json (trf name=prmon)
[2025-11-01 14:52:03] 2025-11-01 18:51:30,587 | INFO     | extracted standard info from prmon json
[2025-11-01 14:52:03] 2025-11-01 18:51:30,587 | INFO     | extracted standard memory fields from prmon json
[2025-11-01 14:52:03] 2025-11-01 18:51:30,587 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-01 14:52:03] 2025-11-01 18:51:30,588 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-11-01 14:52:03] 2025-11-01 18:51:30,588 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-11-01 14:52:03] 2025-11-01 18:51:30,589 | INFO     | fitting pss+swap vs Time
[2025-11-01 14:52:03] 2025-11-01 18:51:30,589 | INFO     | sum of square deviations: 115715658.0
[2025-11-01 14:52:03] 2025-11-01 18:51:30,589 | INFO     | sum of deviations: -15501532646.0
[2025-11-01 14:52:03] 2025-11-01 18:51:30,589 | INFO     | mean x: 1762020787.5
[2025-11-01 14:52:03] 2025-11-01 18:51:30,589 | INFO     | mean y: 2799986.277777778
[2025-11-01 14:52:03] 2025-11-01 18:51:30,590 | INFO     | -- intersect: 236047110950.32968
[2025-11-01 14:52:03] 2025-11-01 18:51:30,590 | INFO     | intersect: 236047110950.32968
[2025-11-01 14:52:03] 2025-11-01 18:51:30,590 | INFO     | chi2: 0.11229952999222566
[2025-11-01 14:52:03] 2025-11-01 18:51:30,590 | INFO     | -- intersect: 236047110950.32968
[2025-11-01 14:52:03] 2025-11-01 18:51:30,590 | INFO     | current memory leak: -133.96 B/s (using 72 data points, chi2=0.11)
[2025-11-01 14:52:03] 2025-11-01 18:51:30,590 | INFO     | could have reported an average CPU frequency of 2916 MHz (6 samples)
[2025-11-01 14:52:03] 2025-11-01 18:51:30,590 | INFO     | ..............................
[2025-11-01 14:52:03] 2025-11-01 18:51:30,591 | INFO     | . Timing measurements:
[2025-11-01 14:52:03] 2025-11-01 18:51:30,591 | INFO     | . get job = 0 s
[2025-11-01 14:52:03] 2025-11-01 18:51:30,591 | INFO     | . initial setup = 2 s
[2025-11-01 14:52:03] 2025-11-01 18:51:30,591 | INFO     | . payload setup = 4 s
[2025-11-01 14:52:03] 2025-11-01 18:51:30,591 | INFO     | . stage-in = 0 s
[2025-11-01 14:52:03] 2025-11-01 18:51:30,591 | INFO     | . payload execution = 4769 s
[2025-11-01 14:52:03] 2025-11-01 18:51:30,591 | INFO     | . stage-out = 0 s
[2025-11-01 14:52:03] 2025-11-01 18:51:30,591 | INFO     | . log creation = 0 s
[2025-11-01 14:52:03] 2025-11-01 18:51:30,591 | INFO     | ..............................
[2025-11-01 14:52:03] 2025-11-01 18:51:30,655 | INFO     | 
[2025-11-01 14:52:03] 2025-11-01 18:51:30,655 | INFO     | job summary report
[2025-11-01 14:52:03] 2025-11-01 18:51:30,655 | INFO     | --------------------------------------------------
[2025-11-01 14:52:03] 2025-11-01 18:51:30,655 | INFO     | PanDA job id: 6857795776
[2025-11-01 14:52:03] 2025-11-01 18:51:30,655 | INFO     | task id: 46964970
[2025-11-01 14:52:03] 2025-11-01 18:51:30,655 | INFO     | errors: (none)
[2025-11-01 14:52:03] 2025-11-01 18:51:30,655 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-01 14:52:03] 2025-11-01 18:51:30,655 | INFO     | pilot state: finished 
[2025-11-01 14:52:03] 2025-11-01 18:51:30,655 | INFO     | transexitcode: 0
[2025-11-01 14:52:03] 2025-11-01 18:51:30,655 | INFO     | exeerrorcode: 0
[2025-11-01 14:52:03] 2025-11-01 18:51:30,656 | INFO     | exeerrordiag: 
[2025-11-01 14:52:03] 2025-11-01 18:51:30,656 | INFO     | exitcode: 0
[2025-11-01 14:52:03] 2025-11-01 18:51:30,656 | INFO     | exitmsg: OK
[2025-11-01 14:52:03] 2025-11-01 18:51:30,656 | INFO     | cpuconsumptiontime: 35617 s
[2025-11-01 14:52:03] 2025-11-01 18:51:30,656 | INFO     | nevents: 400
[2025-11-01 14:52:03] 2025-11-01 18:51:30,656 | INFO     | neventsw: 0
[2025-11-01 14:52:03] 2025-11-01 18:51:30,656 | INFO     | pid: 1042870
[2025-11-01 14:52:03] 2025-11-01 18:51:30,656 | INFO     | pgrp: 1042870
[2025-11-01 14:52:03] 2025-11-01 18:51:30,656 | INFO     | corecount: 8
[2025-11-01 14:52:03] 2025-11-01 18:51:30,656 | INFO     | event service: False
[2025-11-01 14:52:03] 2025-11-01 18:51:30,656 | INFO     | sizes: {0: 2348969, 4: 2349231, 11: 2349259, 4777: 2375552, 4779: 2384606, 4783: 2384744}
[2025-11-01 14:52:03] 2025-11-01 18:51:30,656 | INFO     | --------------------------------------------------
[2025-11-01 14:52:03] 2025-11-01 18:51:30,656 | INFO     | 
[2025-11-01 14:52:03] 2025-11-01 18:51:30,656 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-11-01 14:52:03] 2025-11-01 18:51:30,669 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-01 14:52:03] 2025-11-01 18:51:30,670 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-01 14:52:03] 2025-11-01 18:51:30,670 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-01 14:52:03] 2025-11-01 18:51:30,670 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-01 14:52:03] 2025-11-01 18:51:30,670 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-01 14:52:03] 2025-11-01 18:51:30,670 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-01 14:52:03] 2025-11-01 18:51:30,670 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-01 14:52:03] 2025-11-01 18:51:30,670 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-01 14:52:03] 2025-11-01 18:51:30,670 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-01 14:52:03] 2025-11-01 18:51:30,670 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-01 14:52:03] 2025-11-01 18:51:30,670 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-01 14:52:03] 2025-11-01 18:51:30,670 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-01 14:52:03] 2025-11-01 18:51:30,670 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-01 14:52:03] 2025-11-01 18:51:30,670 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-01 14:52:03] 2025-11-01 18:51:30,671 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-01 14:52:03] 2025-11-01 18:51:30,671 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-01 14:52:03] 2025-11-01 18:51:30,671 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-01 14:52:03] 2025-11-01 18:51:30,671 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-01 14:52:03] 2025-11-01 18:51:30,671 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-01 14:52:03] 2025-11-01 18:51:30,671 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-01 14:52:03] 2025-11-01 18:51:30,671 | INFO     | job 6857795776 has completed (purged errors)
[2025-11-01 14:52:03] 2025-11-01 18:51:30,671 | INFO     | overall cleanup function is called
[2025-11-01 14:52:03] 2025-11-01 18:51:31,678 | INFO     | --- collectZombieJob: --- 10, [1042870]
[2025-11-01 14:52:03] 2025-11-01 18:51:31,678 | INFO     | zombie collector waiting for pid 1042870
[2025-11-01 14:52:03] 2025-11-01 18:51:31,678 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-01 14:52:03] 2025-11-01 18:51:31,678 | INFO     | collected zombie processes
[2025-11-01 14:52:03] 2025-11-01 18:51:31,678 | INFO     | will attempt to kill all subprocesses of pid=1042870
[2025-11-01 14:52:03] 2025-11-01 18:51:31,888 | INFO     | process IDs to be killed: [1042870] (in reverse order)
[2025-11-01 14:52:03] 2025-11-01 18:51:31,958 | WARNING  | found no corresponding commands to process id(s)
[2025-11-01 14:52:03] 2025-11-01 18:51:31,959 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-01 14:52:03] 2025-11-01 18:51:31,966 | INFO     | did not find any defunct processes belonging to 1042870
[2025-11-01 14:52:03] 2025-11-01 18:51:31,972 | INFO     | did not find any defunct processes belonging to 1042870
[2025-11-01 14:52:03] 2025-11-01 18:51:31,973 | INFO     | ready for new job
[2025-11-01 14:52:03] 2025-11-01 18:51:31,973 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-01 14:52:03] 2025-11-01 18:51:31,974 | INFO     | ***************************************
[2025-11-01 14:52:03] 2025-11-01 18:51:31,974 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-11-01 14:52:03] 2025-11-01 18:51:31,974 | INFO     | ***************************************
[2025-11-01 14:52:03] 2025-11-01 18:51:31,975 | INFO     | 
[2025-11-01 14:52:03] 2025-11-01 18:51:31,978 | INFO     | architecture information:
[2025-11-01 14:52:03] 2025-11-01 18:51:31,978 | INFO     | executing command: cat /etc/os-release
[2025-11-01 14:52:03] 2025-11-01 18:51:31,991 | INFO     | cat /etc/os-release:
[2025-11-01 14:52:03] NAME="CentOS Linux"
[2025-11-01 14:52:03] VERSION="7 (Core)"
[2025-11-01 14:52:03] ID="centos"
[2025-11-01 14:52:03] ID_LIKE="rhel fedora"
[2025-11-01 14:52:03] VERSION_ID="7"
[2025-11-01 14:52:03] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-01 14:52:03] ANSI_COLOR="0;31"
[2025-11-01 14:52:03] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-01 14:52:03] HOME_URL="https://www.centos.org/"
[2025-11-01 14:52:03] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-01 14:52:03] 
[2025-11-01 14:52:03] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-01 14:52:03] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-01 14:52:03] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-01 14:52:03] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-01 14:52:03] 
[2025-11-01 14:52:03] 2025-11-01 18:51:31,992 | INFO     | ***************************************
[2025-11-01 14:52:03] 2025-11-01 18:51:32,494 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-11-01 14:52:03] 2025-11-01 18:51:32,507 | INFO     | sufficient remaining disk space (75416731648 B)
[2025-11-01 14:52:03] 2025-11-01 18:51:32,507 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-01 14:52:03] 2025-11-01 18:51:32,507 | INFO     | current server update state: UPDATING_FINAL
[2025-11-01 14:52:03] 2025-11-01 18:51:32,508 | INFO     | update_server=False
[2025-11-01 14:52:03] 2025-11-01 18:51:32,508 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-01 14:52:03] 2025-11-01 18:51:32,508 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-01 14:52:03] 2025-11-01 18:51:32,572 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-01 14:52:03] 2025-11-01 18:51:32,698 | INFO     | all data control threads have been joined
[2025-11-01 14:52:03] 2025-11-01 18:51:32,899 | INFO     | all job control threads have been joined
[2025-11-01 14:52:03] 2025-11-01 18:51:32,926 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-11-01 14:52:03] 2025-11-01 18:51:32,926 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-11-01 14:52:03] 2025-11-01 18:51:32,926 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-01 14:52:03] 2025-11-01 18:51:32,926 | INFO     | will abort loop
[2025-11-01 14:52:03] 2025-11-01 18:51:33,142 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-01 14:52:03] 2025-11-01 18:51:33,297 | INFO     | all payload control threads have been joined
[2025-11-01 14:52:03] 2025-11-01 18:51:33,513 | INFO     | [job] retrieve thread has finished
[2025-11-01 14:52:03] 2025-11-01 18:51:33,513 | INFO     | [job] queue monitor thread has finished
[2025-11-01 14:52:03] 2025-11-01 18:51:33,534 | INFO     | [payload] execute_payloads thread has finished
[2025-11-01 14:52:03] 2025-11-01 18:51:33,586 | INFO     | [payload] failed_post thread has finished
[2025-11-01 14:52:03] 2025-11-01 18:51:33,703 | INFO     | [data] control thread has finished
[2025-11-01 14:52:03] 2025-11-01 18:51:33,904 | INFO     | [job] control thread has finished
[2025-11-01 14:52:03] 2025-11-01 18:51:33,931 | INFO     | [job] job monitor thread has finished
[2025-11-01 14:52:03] 2025-11-01 18:51:34,091 | INFO     | [job] validate thread has finished
[2025-11-01 14:52:03] 2025-11-01 18:51:34,158 | INFO     | [payload] validate_post thread has finished
[2025-11-01 14:52:03] 2025-11-01 18:51:34,261 | INFO     | [job] create_data_payload thread has finished
[2025-11-01 14:52:03] 2025-11-01 18:51:34,302 | INFO     | [payload] control thread has finished
[2025-11-01 14:52:03] 2025-11-01 18:51:34,381 | INFO     | [payload] validate_pre thread has finished
[2025-11-01 14:52:03] 2025-11-01 18:51:34,547 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-01 14:52:03] 2025-11-01 18:51:34,577 | INFO     | [data] copytool_out thread has finished
[2025-11-01 14:52:03] 2025-11-01 18:51:34,817 | INFO     | [data] copytool_in thread has finished
[2025-11-01 14:52:03] 2025-11-01 18:51:37,147 | INFO     | [data] queue_monitor thread has finished
[2025-11-01 14:52:03] 2025-11-01 18:51:40,918 | INFO     | [monitor] cgroup control has ended
[2025-11-01 14:52:03] 2025-11-01 18:51:42,953 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140539401250624)>', '<ExcThread(monitor, started 140538636396288)>']
[2025-11-01 14:52:03] 2025-11-01 18:51:47,978 | INFO     | all workflow threads have been joined
[2025-11-01 14:52:03] 2025-11-01 18:51:47,978 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-01 14:52:03] 2025-11-01 18:51:47,978 | INFO     | traces error code: 0
[2025-11-01 14:52:03] 2025-11-01 18:51:47,978 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-01 14:52:03] 2025-11-01 18:52:03,523 | INFO     | PID=1036469 has CPU usage=4.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-01 14:52:03] 2025-11-01 18:52:03,525 | INFO     | .. there are 8 such processes running
[2025-11-01 14:52:03] 2025-11-01 18:52:03,525 | INFO     | found 0 job(s) in 20 queues
[2025-11-01 14:52:03] 2025-11-01 18:52:03,525 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-01 14:52:03] 2025-11-01 18:52:03,525 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-01 14:52:03] 2025-11-01 18:52:03,525 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-01 14:52:03] 2025-11-01 18:52:03,526 | CRITICAL | thread 'MainThread' is not alive
[2025-11-01 14:52:03] 2025-11-01 18:52:03,526 | INFO     | [monitor] control thread has ended
[2025-11-01 14:52:03] 2025-11-01 18:52:03,631 [wrapper] ==== pilot stdout END ====
[2025-11-01 14:52:03] 2025-11-01 18:52:03,634 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-01 14:52:03] 2025-11-01 18:52:03,637 [wrapper] pilotpid: 1036469
[2025-11-01 14:52:03] 2025-11-01 18:52:03,639 [wrapper] Pilot exit status: 0
[2025-11-01 14:52:03] 2025-11-01 18:52:03,651 [wrapper] pandaids: 6857795776
[2025-11-01 14:52:03] 2025-11-01 18:52:03,700 [wrapper] cleanup supervisor_pilot 1162238 1036470
[2025-11-01 14:52:03] 2025-11-01 18:52:03,703 [wrapper] Test setup, not cleaning
[2025-11-01 14:52:03] 2025-11-01 18:52:03,706 [wrapper] apfmon messages muted
[2025-11-01 14:52:03] 2025-11-01 18:52:03,708 [wrapper] ==== wrapper stdout END ====
[2025-11-01 14:52:03] 2025-11-01 18:52:03,711 [wrapper] ==== wrapper stderr END ====
[2025-11-01 14:52:03]  *** Error codes and diagnostics ***
[2025-11-01 14:52:03]     "exeErrorCode": 0,
[2025-11-01 14:52:03]     "exeErrorDiag": "",
[2025-11-01 14:52:03]     "pilotErrorCode": 0,
[2025-11-01 14:52:03]     "pilotErrorDiag": "",
[2025-11-01 14:52:03]  *** Listing of results directory ***
[2025-11-01 14:52:03] total 456076
[2025-11-01 14:52:03] -rw-r--r--. 1 boincer umatlas      5112 Oct 24 08:45 queuedata.json
[2025-11-01 14:52:03] -rwx------. 1 boincer umatlas     36292 Oct 24 08:48 runpilot2-wrapper.sh
[2025-11-01 14:52:03] -rw-r--r--. 1 boincer umatlas    557409 Oct 24 08:48 pilot3.tar.gz
[2025-11-01 14:52:03] -rw-r--r--. 1 boincer umatlas       100 Nov  1 13:31 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-01 14:52:03] -rwxr-xr-x. 1 boincer umatlas      7986 Nov  1 13:31 run_atlas
[2025-11-01 14:52:03] -rw-r--r--. 1 boincer umatlas       105 Nov  1 13:31 job.xml
[2025-11-01 14:52:03] -rw-r--r--. 2 boincer umatlas 268604365 Nov  1 13:31 EVNT.46964963._000016.pool.root.1
[2025-11-01 14:52:03] -rw-r--r--. 2 boincer umatlas     15120 Nov  1 13:31 start_atlas.sh
[2025-11-01 14:52:03] drwxrwx--x. 2 boincer umatlas      4096 Nov  1 13:31 shared
[2025-11-01 14:52:03] -rw-r--r--. 2 boincer umatlas    569680 Nov  1 13:31 input.tar.gz
[2025-11-01 14:52:03] -rw-r--r--. 1 boincer umatlas         0 Nov  1 13:31 boinc_lockfile
[2025-11-01 14:52:03] -rw-r--r--. 1 boincer umatlas      2586 Nov  1 13:31 pandaJob.out
[2025-11-01 14:52:03] -rw-------. 1 boincer umatlas    987516 Nov  1 13:31 agis_schedconf.cvmfs.json
[2025-11-01 14:52:03] -rw-------. 1 boincer umatlas   1560632 Nov  1 13:31 agis_ddmendpoints.agis.ALL.json
[2025-11-01 14:52:03] drwx------. 5 boincer umatlas      4096 Nov  1 13:31 pilot3
[2025-11-01 14:52:03] -rw-r--r--. 1 boincer umatlas      6837 Nov  1 14:49 init_data.xml
[2025-11-01 14:52:03] -rw-------. 1 boincer umatlas 192414833 Nov  1 14:50 HITS.46964970._000894.pool.root.1
[2025-11-01 14:52:03] -rw-r--r--. 1 boincer umatlas       530 Nov  1 14:51 boinc_task_state.xml
[2025-11-01 14:52:03] -rw-------. 1 boincer umatlas      1026 Nov  1 14:51 memory_monitor_summary.json
[2025-11-01 14:52:03] -rw-------. 1 boincer umatlas    332228 Nov  1 14:51 log.46964970._000894.job.log.tgz.1
[2025-11-01 14:52:03] -rw-------. 1 boincer umatlas      7805 Nov  1 14:51 heartbeat.json
[2025-11-01 14:52:03] -rw-r--r--. 1 boincer umatlas      8192 Nov  1 14:51 boinc_mmap_file
[2025-11-01 14:52:03] -rw-r--r--. 1 boincer umatlas        27 Nov  1 14:51 wrapper_checkpoint.txt
[2025-11-01 14:52:03] -rw-------. 1 boincer umatlas        95 Nov  1 14:52 pilot_heartbeat.json
[2025-11-01 14:52:03] -rw-------. 1 boincer umatlas       892 Nov  1 14:52 pilotlog.txt
[2025-11-01 14:52:03] -rw-------. 1 boincer umatlas    709975 Nov  1 14:52 log.46964970._000894.job.log.1
[2025-11-01 14:52:03] -rw-------. 1 boincer umatlas       357 Nov  1 14:52 output.list
[2025-11-01 14:52:03] -rw-r--r--. 1 boincer umatlas       620 Nov  1 14:52 runtime_log
[2025-11-01 14:52:03] -rw-------. 1 boincer umatlas   1064960 Nov  1 14:52 result.tar.gz
[2025-11-01 14:52:03] -rw-r--r--. 1 boincer umatlas      8703 Nov  1 14:52 runtime_log.err
[2025-11-01 14:52:03] -rw-------. 1 boincer umatlas       651 Nov  1 14:52 0a9LDmzOWW8n9Rq4apOajLDm4fhM0noT9bVof3QYDmKMlMDmvgtg2m.diag
[2025-11-01 14:52:03] -rw-r--r--. 1 boincer umatlas     21807 Nov  1 14:52 stderr.txt
[2025-11-01 14:52:03] HITS file was successfully produced:
[2025-11-01 14:52:03] -rw-------. 1 boincer umatlas 192414833 Nov  1 14:50 shared/HITS.pool.root.1
[2025-11-01 14:52:03]  *** Contents of shared directory: ***
[2025-11-01 14:52:03] total 451840
[2025-11-01 14:52:03] -rw-r--r--. 2 boincer umatlas 268604365 Nov  1 13:31 ATLAS.root_0
[2025-11-01 14:52:03] -rw-r--r--. 2 boincer umatlas     15120 Nov  1 13:31 start_atlas.sh
[2025-11-01 14:52:03] -rw-r--r--. 2 boincer umatlas    569680 Nov  1 13:31 input.tar.gz
[2025-11-01 14:52:03] -rw-------. 1 boincer umatlas 192414833 Nov  1 14:50 HITS.pool.root.1
[2025-11-01 14:52:03] -rw-------. 1 boincer umatlas   1064960 Nov  1 14:52 result.tar.gz
14:52:05 (1032697): run_atlas exited; CPU time 35720.732839
14:52:05 (1032697): called boinc_finish(0)

</stderr_txt>
]]>

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