Stderr output

<core_client_version>7.24.1</core_client_version>
<![CDATA[
<stderr_txt>
01:06:24 (1268108): wrapper (7.7.26015): starting
01:06:24 (1268108): wrapper: running run_atlas (--nthreads 4)
[2025-11-01 01:06:24] Arguments: --nthreads 4
[2025-11-01 01:06:24] Threads: 4
[2025-11-01 01:06:24] Checking for CVMFS
[2025-11-01 01:06:25] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-01 01:06:27] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-01 01:06:27] Running cvmfs_config stat atlas.cern.ch
[2025-11-01 01:06:27] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-01 01:06:27] 2.13.2.0 1268318 0 24796 152367 3 1 2292623 4096000 0 130560 0 0 0.000 1291 1148 http://s1fnal-cvmfs.openhtc.io:8080/cvmfs/atlas.cern.ch DIRECT 1
[2025-11-01 01:06:27] CVMFS is ok
[2025-11-01 01:06:27] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-01 01:06:27] Small home clusters do not require a local http proxy but it is suggested if
[2025-11-01 01:06:27] more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
[2025-11-01 01:06:27] Further information can be found at the LHC@home message board.
[2025-11-01 01:06:27] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-01 01:06:27] Checking for apptainer binary...
[2025-11-01 01:06:27] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-01 01:06:27] Running /usr/bin/apptainer --version
[2025-11-01 01:06:27] apptainer version 1.4.3
[2025-11-01 01:06:27] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-01 01:06:28] x670aorus
[2025-11-01 01:06:28] apptainer works
[2025-11-01 01:06:28] Set ATHENA_PROC_NUMBER=4
[2025-11-01 01:06:28] Set ATHENA_CORE_NUMBER=4
[2025-11-01 01:06:28] Starting ATLAS job with PandaID=6858486733
[2025-11-01 01:06:28] Running command: /usr/bin/apptainer exec -B /cvmfs,/home/x670aorus/boinc3/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-01 02:16:05]  *** The last 200 lines of the pilot log: ***
[2025-11-01 02:16:05]  mtime=0
[2025-11-01 02:16:05]  protocol_id=None
[2025-11-01 02:16:05]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-11-01 02:16:05]  replicas=None
[2025-11-01 02:16:05]  scope=mc23_13p6TeV
[2025-11-01 02:16:05]  status=None
[2025-11-01 02:16:05]  status_code=0
[2025-11-01 02:16:05]  storage_token=
[2025-11-01 02:16:05]  surl=/home/x670aorus/boinc3/slots/0/PanDA_Pilot-6858486733/log.46965017._001031.job.log.tgz.1
[2025-11-01 02:16:05]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/ec/79/log.46965017._001031.job.log.tgz.1
[2025-11-01 02:16:05]  workdir=None
[2025-11-01 02:16:05] ]
[2025-11-01 02:16:05] 2025-11-01 08:15:28,562 | INFO     | transferring file log.46965017._001031.job.log.tgz.1 from /home/x670aorus/boinc3/slots/0/PanDA_Pilot-6858486733/log.46965017._001031.job.log.tgz.1 to /home/x670aor
[2025-11-01 02:16:05] 2025-11-01 08:15:28,562 | INFO     | executing command: /usr/bin/env mv /home/x670aorus/boinc3/slots/0/PanDA_Pilot-6858486733/log.46965017._001031.job.log.tgz.1 /home/x670aorus/boinc3/slots/0/log.4696
[2025-11-01 02:16:05] 2025-11-01 08:15:28,576 | INFO     | adding to output.list: log.46965017._001031.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/ec/79/log.46965017._001031.job.log.tg
[2025-11-01 02:16:05] 2025-11-01 08:15:28,576 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-11-01 02:16:05] 2025-11-01 08:15:28,576 | INFO     | summary of transferred files:
[2025-11-01 02:16:05] 2025-11-01 08:15:28,576 | INFO     |  -- lfn=log.46965017._001031.job.log.tgz.1, status_code=0, status=transferred
[2025-11-01 02:16:05] 2025-11-01 08:15:28,577 | INFO     | stage-out finished correctly
[2025-11-01 02:16:05] 2025-11-01 08:15:29,691 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-11-01 02:16:05] 2025-11-01 08:15:29,996 | INFO     | time since job start (4127s) is within the limit (172800.0s)
[2025-11-01 02:16:05] 2025-11-01 08:15:30,356 | INFO     | job 6858486733 has state=finished
[2025-11-01 02:16:05] 2025-11-01 08:15:30,356 | INFO     | preparing for final server update for job 6858486733 in state='finished'
[2025-11-01 02:16:05] 2025-11-01 08:15:30,356 | INFO     | this job has now completed (state=finished)
[2025-11-01 02:16:05] 2025-11-01 08:15:30,356 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-11-01 02:16:05] 2025-11-01 08:15:30,356 | INFO     | log transfer has been attempted: DONE
[2025-11-01 02:16:05] 2025-11-01 08:15:30,356 | INFO     | job 6858486733 has finished - writing final server update
[2025-11-01 02:16:05] 2025-11-01 08:15:30,357 | INFO     | total number of processed events: 400 (read)
[2025-11-01 02:16:05] 2025-11-01 08:15:30,357 | INFO     | executing command: lscpu
[2025-11-01 02:16:05] 2025-11-01 08:15:30,377 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-11-01 02:16:05] 2025-11-01 08:15:32,001 | INFO     | time since job start (4130s) is within the limit (172800.0s)
[2025-11-01 02:16:05] 2025-11-01 08:15:32,957 | WARNING  | process 1279250 can no longer be monitored (due to stat problems) - aborting
[2025-11-01 02:16:05] 2025-11-01 08:15:32,957 | INFO     | using path: /home/x670aorus/boinc3/slots/0/PanDA_Pilot-6858486733/memory_monitor_summary.json (trf name=prmon)
[2025-11-01 02:16:05] 2025-11-01 08:15:33,025 | INFO     | number of running child processes to parent process 1279250: 1
[2025-11-01 02:16:05] 2025-11-01 08:15:33,025 | INFO     | maximum number of monitored processes: 6
[2025-11-01 02:16:05] 2025-11-01 08:15:33,255 | INFO     | CPU arch script returned: x86-64-v4
[2025-11-01 02:16:05] 2025-11-01 08:15:33,258 | INFO     | found 16 cores (16 cores per socket, 1 socket) HT, CPU MHz: 4591.869187499999
[2025-11-01 02:16:05] 2025-11-01 08:15:33,260 | INFO     | using path: /home/x670aorus/boinc3/slots/0/PanDA_Pilot-6858486733/memory_monitor_summary.json (trf name=prmon)
[2025-11-01 02:16:05] 2025-11-01 08:15:33,260 | INFO     | extracted standard info from prmon json
[2025-11-01 02:16:05] 2025-11-01 08:15:33,260 | INFO     | extracted standard memory fields from prmon json
[2025-11-01 02:16:05] 2025-11-01 08:15:33,260 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-01 02:16:05] 2025-11-01 08:15:33,260 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-11-01 02:16:05] 2025-11-01 08:15:33,260 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-11-01 02:16:05] 2025-11-01 08:15:33,261 | INFO     | fitting pss+swap vs Time
[2025-11-01 02:16:05] 2025-11-01 08:15:33,261 | INFO     | sum of square deviations: 70364110.0
[2025-11-01 02:16:05] 2025-11-01 08:15:33,261 | INFO     | sum of deviations: -1468692058.9999998
[2025-11-01 02:16:05] 2025-11-01 08:15:33,261 | INFO     | mean x: 1761982959.0
[2025-11-01 02:16:05] 2025-11-01 08:15:33,261 | INFO     | mean y: 2399406.6393442624
[2025-11-01 02:16:05] 2025-11-01 08:15:33,261 | INFO     | -- intersect: 36779818746.93402
[2025-11-01 02:16:05] 2025-11-01 08:15:33,261 | INFO     | intersect: 36779818746.93402
[2025-11-01 02:16:05] 2025-11-01 08:15:33,261 | INFO     | chi2: 0.07101548526497072
[2025-11-01 02:16:05] 2025-11-01 08:15:33,261 | INFO     | -- intersect: 36779818746.93402
[2025-11-01 02:16:05] 2025-11-01 08:15:33,261 | INFO     | current memory leak: -20.87 B/s (using 61 data points, chi2=0.07)
[2025-11-01 02:16:05] 2025-11-01 08:15:33,262 | INFO     | could have reported an average CPU frequency of 4511 MHz (6 samples)
[2025-11-01 02:16:05] 2025-11-01 08:15:33,262 | INFO     | ..............................
[2025-11-01 02:16:05] 2025-11-01 08:15:33,262 | INFO     | . Timing measurements:
[2025-11-01 02:16:05] 2025-11-01 08:15:33,262 | INFO     | . get job = 0 s
[2025-11-01 02:16:05] 2025-11-01 08:15:33,262 | INFO     | . initial setup = 3 s
[2025-11-01 02:16:05] 2025-11-01 08:15:33,262 | INFO     | . payload setup = 4 s
[2025-11-01 02:16:05] 2025-11-01 08:15:33,262 | INFO     | . stage-in = 0 s
[2025-11-01 02:16:05] 2025-11-01 08:15:33,262 | INFO     | . payload execution = 4103 s
[2025-11-01 02:16:05] 2025-11-01 08:15:33,262 | INFO     | . stage-out = 0 s
[2025-11-01 02:16:05] 2025-11-01 08:15:33,262 | INFO     | . log creation = 0 s
[2025-11-01 02:16:05] 2025-11-01 08:15:33,262 | INFO     | ..............................
[2025-11-01 02:16:05] 2025-11-01 08:15:33,718 | INFO     | 
[2025-11-01 02:16:05] 2025-11-01 08:15:33,718 | INFO     | job summary report
[2025-11-01 02:16:05] 2025-11-01 08:15:33,718 | INFO     | --------------------------------------------------
[2025-11-01 02:16:05] 2025-11-01 08:15:33,718 | INFO     | PanDA job id: 6858486733
[2025-11-01 02:16:05] 2025-11-01 08:15:33,718 | INFO     | task id: 46965017
[2025-11-01 02:16:05] 2025-11-01 08:15:33,718 | INFO     | errors: (none)
[2025-11-01 02:16:05] 2025-11-01 08:15:33,718 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-01 02:16:05] 2025-11-01 08:15:33,718 | INFO     | pilot state: finished 
[2025-11-01 02:16:05] 2025-11-01 08:15:33,718 | INFO     | transexitcode: 0
[2025-11-01 02:16:05] 2025-11-01 08:15:33,718 | INFO     | exeerrorcode: 0
[2025-11-01 02:16:05] 2025-11-01 08:15:33,718 | INFO     | exeerrordiag: 
[2025-11-01 02:16:05] 2025-11-01 08:15:33,718 | INFO     | exitcode: 0
[2025-11-01 02:16:05] 2025-11-01 08:15:33,718 | INFO     | exitmsg: OK
[2025-11-01 02:16:05] 2025-11-01 08:15:33,718 | INFO     | cpuconsumptiontime: 15806 s
[2025-11-01 02:16:05] 2025-11-01 08:15:33,718 | INFO     | nevents: 400
[2025-11-01 02:16:05] 2025-11-01 08:15:33,718 | INFO     | neventsw: 0
[2025-11-01 02:16:05] 2025-11-01 08:15:33,718 | INFO     | pid: 1279250
[2025-11-01 02:16:05] 2025-11-01 08:15:33,718 | INFO     | pgrp: 1279250
[2025-11-01 02:16:05] 2025-11-01 08:15:33,718 | INFO     | corecount: 4
[2025-11-01 02:16:05] 2025-11-01 08:15:33,719 | INFO     | event service: False
[2025-11-01 02:16:05] 2025-11-01 08:15:33,719 | INFO     | sizes: {0: 2349042, 3: 2349304, 11: 2349332, 4111: 2375363, 4112: 2375362, 4113: 2384432, 4114: 2384616, 4117: 2384810}
[2025-11-01 02:16:05] 2025-11-01 08:15:33,719 | INFO     | --------------------------------------------------
[2025-11-01 02:16:05] 2025-11-01 08:15:33,719 | INFO     | 
[2025-11-01 02:16:05] 2025-11-01 08:15:33,719 | INFO     | executing command: ls -lF /home/x670aorus/boinc3/slots/0
[2025-11-01 02:16:05] 2025-11-01 08:15:33,731 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-01 02:16:05] 2025-11-01 08:15:33,732 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-01 02:16:05] 2025-11-01 08:15:33,732 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-01 02:16:05] 2025-11-01 08:15:33,732 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-01 02:16:05] 2025-11-01 08:15:33,732 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-01 02:16:05] 2025-11-01 08:15:33,732 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-01 02:16:05] 2025-11-01 08:15:33,732 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-01 02:16:05] 2025-11-01 08:15:33,732 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-01 02:16:05] 2025-11-01 08:15:33,732 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-01 02:16:05] 2025-11-01 08:15:33,732 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-01 02:16:05] 2025-11-01 08:15:33,732 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-01 02:16:05] 2025-11-01 08:15:33,732 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-01 02:16:05] 2025-11-01 08:15:33,732 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-01 02:16:05] 2025-11-01 08:15:33,732 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-01 02:16:05] 2025-11-01 08:15:33,732 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-01 02:16:05] 2025-11-01 08:15:33,732 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-01 02:16:05] 2025-11-01 08:15:33,732 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-01 02:16:05] 2025-11-01 08:15:33,732 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-01 02:16:05] 2025-11-01 08:15:33,732 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-01 02:16:05] 2025-11-01 08:15:33,732 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-01 02:16:05] 2025-11-01 08:15:33,732 | INFO     | job 6858486733 has completed (purged errors)
[2025-11-01 02:16:05] 2025-11-01 08:15:33,732 | INFO     | overall cleanup function is called
[2025-11-01 02:16:05] 2025-11-01 08:15:34,737 | INFO     | --- collectZombieJob: --- 10, [1279250]
[2025-11-01 02:16:05] 2025-11-01 08:15:34,738 | INFO     | zombie collector waiting for pid 1279250
[2025-11-01 02:16:05] 2025-11-01 08:15:34,738 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-01 02:16:05] 2025-11-01 08:15:34,738 | INFO     | collected zombie processes
[2025-11-01 02:16:05] 2025-11-01 08:15:34,738 | INFO     | will attempt to kill all subprocesses of pid=1279250
[2025-11-01 02:16:05] 2025-11-01 08:15:34,798 | INFO     | process IDs to be killed: [1279250] (in reverse order)
[2025-11-01 02:16:05] 2025-11-01 08:15:34,831 | WARNING  | found no corresponding commands to process id(s)
[2025-11-01 02:16:05] 2025-11-01 08:15:34,831 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-01 02:16:05] 2025-11-01 08:15:34,835 | INFO     | did not find any defunct processes belonging to 1279250
[2025-11-01 02:16:05] 2025-11-01 08:15:34,838 | INFO     | did not find any defunct processes belonging to 1279250
[2025-11-01 02:16:05] 2025-11-01 08:15:34,838 | INFO     | ready for new job
[2025-11-01 02:16:05] 2025-11-01 08:15:34,838 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-01 02:16:05] 2025-11-01 08:15:34,839 | INFO     | ***************************************
[2025-11-01 02:16:05] 2025-11-01 08:15:34,839 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-11-01 02:16:05] 2025-11-01 08:15:34,839 | INFO     | ***************************************
[2025-11-01 02:16:05] 2025-11-01 08:15:34,839 | INFO     | 
[2025-11-01 02:16:05] 2025-11-01 08:15:34,840 | INFO     | architecture information:
[2025-11-01 02:16:05] 2025-11-01 08:15:34,841 | INFO     | executing command: cat /etc/os-release
[2025-11-01 02:16:05] 2025-11-01 08:15:34,849 | INFO     | cat /etc/os-release:
[2025-11-01 02:16:05] NAME="CentOS Linux"
[2025-11-01 02:16:05] VERSION="7 (Core)"
[2025-11-01 02:16:05] ID="centos"
[2025-11-01 02:16:05] ID_LIKE="rhel fedora"
[2025-11-01 02:16:05] VERSION_ID="7"
[2025-11-01 02:16:05] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-01 02:16:05] ANSI_COLOR="0;31"
[2025-11-01 02:16:05] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-01 02:16:05] HOME_URL="https://www.centos.org/"
[2025-11-01 02:16:05] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-01 02:16:05] 
[2025-11-01 02:16:05] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-01 02:16:05] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-01 02:16:05] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-01 02:16:05] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-01 02:16:05] 
[2025-11-01 02:16:05] 2025-11-01 08:15:34,850 | INFO     | ***************************************
[2025-11-01 02:16:05] 2025-11-01 08:15:35,352 | INFO     | executing command: df -mP /home/x670aorus/boinc3/slots/0
[2025-11-01 02:16:05] 2025-11-01 08:15:35,361 | INFO     | sufficient remaining disk space (755734937600 B)
[2025-11-01 02:16:05] 2025-11-01 08:15:35,362 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-01 02:16:05] 2025-11-01 08:15:35,362 | INFO     | current server update state: UPDATING_FINAL
[2025-11-01 02:16:05] 2025-11-01 08:15:35,362 | INFO     | update_server=False
[2025-11-01 02:16:05] 2025-11-01 08:15:35,362 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-01 02:16:05] 2025-11-01 08:15:35,528 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-11-01 02:16:05] 2025-11-01 08:15:35,528 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-11-01 02:16:05] 2025-11-01 08:15:35,528 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-01 02:16:05] 2025-11-01 08:15:35,528 | INFO     | will abort loop
[2025-11-01 02:16:05] 2025-11-01 08:15:35,685 | INFO     | all payload control threads have been joined
[2025-11-01 02:16:05] 2025-11-01 08:15:35,728 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-01 02:16:05] 2025-11-01 08:15:36,352 | INFO     | all data control threads have been joined
[2025-11-01 02:16:05] 2025-11-01 08:15:36,366 | INFO     | [job] retrieve thread has finished
[2025-11-01 02:16:05] 2025-11-01 08:15:36,409 | INFO     | [payload] failed_post thread has finished
[2025-11-01 02:16:05] 2025-11-01 08:15:36,422 | INFO     | [job] create_data_payload thread has finished
[2025-11-01 02:16:05] 2025-11-01 08:15:36,533 | INFO     | [job] job monitor thread has finished
[2025-11-01 02:16:05] 2025-11-01 08:15:36,612 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-01 02:16:05] 2025-11-01 08:15:36,618 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-01 02:16:05] 2025-11-01 08:15:36,690 | INFO     | [payload] control thread has finished
[2025-11-01 02:16:05] 2025-11-01 08:15:36,928 | INFO     | [payload] validate_post thread has finished
[2025-11-01 02:16:05] 2025-11-01 08:15:36,958 | INFO     | all job control threads have been joined
[2025-11-01 02:16:05] 2025-11-01 08:15:37,357 | INFO     | [data] control thread has finished
[2025-11-01 02:16:05] 2025-11-01 08:15:37,368 | INFO     | [data] copytool_in thread has finished
[2025-11-01 02:16:05] 2025-11-01 08:15:37,443 | INFO     | [payload] execute_payloads thread has finished
[2025-11-01 02:16:05] 2025-11-01 08:15:37,756 | INFO     | [job] validate thread has finished
[2025-11-01 02:16:05] 2025-11-01 08:15:37,762 | INFO     | [payload] validate_pre thread has finished
[2025-11-01 02:16:05] 2025-11-01 08:15:37,964 | INFO     | [job] control thread has finished
[2025-11-01 02:16:05] 2025-11-01 08:15:38,304 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-01 02:16:05] 2025-11-01 08:15:38,617 | INFO     | [data] copytool_out thread has finished
[2025-11-01 02:16:05] 2025-11-01 08:15:39,309 | INFO     | [job] queue monitor thread has finished
[2025-11-01 02:16:05] 2025-11-01 08:15:39,733 | INFO     | [data] queue_monitor thread has finished
[2025-11-01 02:16:05] 2025-11-01 08:15:47,917 | INFO     | [monitor] cgroup control has ended
[2025-11-01 02:16:05] 2025-11-01 08:15:49,051 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 138644247394112)>', '<ExcThread(monitor, started 138643599509248)>']
[2025-11-01 02:16:05] 2025-11-01 08:15:54,070 | INFO     | all workflow threads have been joined
[2025-11-01 02:16:05] 2025-11-01 08:15:54,070 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-01 02:16:05] 2025-11-01 08:15:54,071 | INFO     | traces error code: 0
[2025-11-01 02:16:05] 2025-11-01 08:15:54,071 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-01 02:16:05] 2025-11-01 08:16:05,138 | INFO     | PID=1272538 has CPU usage=2.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-01 02:16:05] 2025-11-01 08:16:05,138 | INFO     | found 0 job(s) in 20 queues
[2025-11-01 02:16:05] 2025-11-01 08:16:05,138 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-01 02:16:05] 2025-11-01 08:16:05,138 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-01 02:16:05] 2025-11-01 08:16:05,138 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-01 02:16:05] 2025-11-01 08:16:05,139 | INFO     | [monitor] control thread has ended
[2025-11-01 02:16:05] 2025-11-01 08:16:05,224 [wrapper] ==== pilot stdout END ====
[2025-11-01 02:16:05] 2025-11-01 08:16:05,226 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-01 02:16:05] 2025-11-01 08:16:05,230 [wrapper] pilotpid: 1272538
[2025-11-01 02:16:05] 2025-11-01 08:16:05,232 [wrapper] Pilot exit status: 0
[2025-11-01 02:16:05] 2025-11-01 08:16:05,241 [wrapper] pandaids: 6858486733
[2025-11-01 02:16:05] 2025-11-01 08:16:05,263 [wrapper] cleanup supervisor_pilot 1298785 1272539
[2025-11-01 02:16:05] 2025-11-01 08:16:05,266 [wrapper] Test setup, not cleaning
[2025-11-01 02:16:05] 2025-11-01 08:16:05,268 [wrapper] apfmon messages muted
[2025-11-01 02:16:05] 2025-11-01 08:16:05,270 [wrapper] ==== wrapper stdout END ====
[2025-11-01 02:16:05] 2025-11-01 08:16:05,272 [wrapper] ==== wrapper stderr END ====
[2025-11-01 02:16:05]  *** Error codes and diagnostics ***
[2025-11-01 02:16:05]     "exeErrorCode": 0,
[2025-11-01 02:16:05]     "exeErrorDiag": "",
[2025-11-01 02:16:05]     "pilotErrorCode": 0,
[2025-11-01 02:16:05]     "pilotErrorDiag": "",
[2025-11-01 02:16:05]  *** Listing of results directory ***
[2025-11-01 02:16:05] total 460992
[2025-11-01 02:16:05] -rw-r--r-- 1 x670aorus x670aorus    557409 Oct 24 18:45 pilot3.tar.gz
[2025-11-01 02:16:05] -rwx------ 1 x670aorus x670aorus     36292 Oct 24 19:23 runpilot2-wrapper.sh
[2025-11-01 02:16:05] -rw-r--r-- 1 x670aorus x670aorus      5112 Oct 24 19:23 queuedata.json
[2025-11-01 02:16:05] -rw-rw-r-- 1 x670aorus x670aorus       100 Nov  1 01:06 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-01 02:16:05] -rwxr-xr-x 1 x670aorus x670aorus      7986 Nov  1 01:06 run_atlas
[2025-11-01 02:16:05] -rw-rw-r-- 1 x670aorus x670aorus       105 Nov  1 01:06 job.xml
[2025-11-01 02:16:05] -rw-r--r-- 2 x670aorus x670aorus     15120 Nov  1 01:06 start_atlas.sh
[2025-11-01 02:16:05] drwxrwx--x 2 x670aorus x670aorus      4096 Nov  1 01:06 shared
[2025-11-01 02:16:05] -rw-r--r-- 2 x670aorus x670aorus    569704 Nov  1 01:06 input.tar.gz
[2025-11-01 02:16:05] -rw-rw-r-- 1 x670aorus x670aorus      9965 Nov  1 01:06 init_data.xml
[2025-11-01 02:16:05] -rw-r--r-- 2 x670aorus x670aorus 273718672 Nov  1 01:06 EVNT.46965009._000042.pool.root.1
[2025-11-01 02:16:05] -rw-rw-r-- 1 x670aorus x670aorus         0 Nov  1 01:06 boinc_lockfile
[2025-11-01 02:16:05] -rw-rw-r-- 1 x670aorus x670aorus      2651 Nov  1 01:06 pandaJob.out
[2025-11-01 02:16:05] -rw------- 1 x670aorus x670aorus    987532 Nov  1 01:06 agis_schedconf.cvmfs.json
[2025-11-01 02:16:05] -rw------- 1 x670aorus x670aorus   1560632 Nov  1 01:06 agis_ddmendpoints.agis.ALL.json
[2025-11-01 02:16:05] drwx------ 5 x670aorus x670aorus      4096 Nov  1 01:06 pilot3
[2025-11-01 02:16:05] -rw------- 1 x670aorus x670aorus        95 Nov  1 02:15 pilot_heartbeat.json
[2025-11-01 02:16:05] -rw------- 1 x670aorus x670aorus 192692575 Nov  1 02:15 HITS.46965017._001031.pool.root.1
[2025-11-01 02:16:05] -rw-rw-r-- 1 x670aorus x670aorus       529 Nov  1 02:15 boinc_task_state.xml
[2025-11-01 02:16:05] -rw------- 1 x670aorus x670aorus      1018 Nov  1 02:15 memory_monitor_summary.json
[2025-11-01 02:16:05] -rw------- 1 x670aorus x670aorus    246618 Nov  1 02:15 log.46965017._001031.job.log.tgz.1
[2025-11-01 02:16:05] -rw------- 1 x670aorus x670aorus      7727 Nov  1 02:15 heartbeat.json
[2025-11-01 02:16:05] -rw-rw-r-- 1 x670aorus x670aorus      8192 Nov  1 02:15 boinc_mmap_file
[2025-11-01 02:16:05] -rw-rw-r-- 1 x670aorus x670aorus        27 Nov  1 02:15 wrapper_checkpoint.txt
[2025-11-01 02:16:05] -rw------- 1 x670aorus x670aorus       747 Nov  1 02:16 pilotlog.txt
[2025-11-01 02:16:05] -rw------- 1 x670aorus x670aorus    618182 Nov  1 02:16 log.46965017._001031.job.log.1
[2025-11-01 02:16:05] -rw------- 1 x670aorus x670aorus       357 Nov  1 02:16 output.list
[2025-11-01 02:16:05] -rw-rw-r-- 1 x670aorus x670aorus       620 Nov  1 02:16 runtime_log
[2025-11-01 02:16:05] -rw------- 1 x670aorus x670aorus    880640 Nov  1 02:16 result.tar.gz
[2025-11-01 02:16:05] -rw-rw-r-- 1 x670aorus x670aorus      8815 Nov  1 02:16 runtime_log.err
[2025-11-01 02:16:05] -rw------- 1 x670aorus x670aorus       657 Nov  1 02:16 LHzKDmJBiW8n9Rq4apOajLDm4fhM0noT9bVof3QYDmDfmMDmPq0Y3n.diag
[2025-11-01 02:16:05] -rw-rw-r-- 1 x670aorus x670aorus     21812 Nov  1 02:16 stderr.txt
[2025-11-01 02:16:05] HITS file was successfully produced:
[2025-11-01 02:16:05] -rw------- 1 x670aorus x670aorus 192692575 Nov  1 02:15 shared/HITS.pool.root.1
[2025-11-01 02:16:05]  *** Contents of shared directory: ***
[2025-11-01 02:16:05] total 456928
[2025-11-01 02:16:05] -rw-r--r-- 2 x670aorus x670aorus     15120 Nov  1 01:06 start_atlas.sh
[2025-11-01 02:16:05] -rw-r--r-- 2 x670aorus x670aorus    569704 Nov  1 01:06 input.tar.gz
[2025-11-01 02:16:05] -rw-r--r-- 2 x670aorus x670aorus 273718672 Nov  1 01:06 ATLAS.root_0
[2025-11-01 02:16:05] -rw------- 1 x670aorus x670aorus 192692575 Nov  1 02:15 HITS.pool.root.1
[2025-11-01 02:16:05] -rw------- 1 x670aorus x670aorus    880640 Nov  1 02:16 result.tar.gz
02:16:06 (1268108): run_atlas exited; CPU time 15810.313436
02:16:06 (1268108): called boinc_finish(0)

</stderr_txt>
]]>

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