Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
05:44:37 (72139): wrapper (7.7.26015): starting
05:44:37 (72139): wrapper: running run_atlas (--nthreads 3)
[2025-10-30 05:44:37] Arguments: --nthreads 3
[2025-10-30 05:44:37] Threads: 3
[2025-10-30 05:44:37] Checking for CVMFS
[2025-10-30 05:44:37] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-30 05:44:37] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-30 05:44:37] Running cvmfs_config stat atlas.cern.ch
[2025-10-30 05:44:37] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-30 05:44:37] 2.9.2.0 3842054 1246 78412 152289 1 57 33029507 36864001 0 130560 0 1113526 99.989 47406 1217 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-10-30 05:44:37] CVMFS is ok
[2025-10-30 05:44:37] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-30 05:44:37] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-30 05:44:37] Further information can be found at the LHC@home message board.
[2025-10-30 05:44:37] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-30 05:44:37] Checking for apptainer binary...
[2025-10-30 05:44:37] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-30 05:44:37] Running /usr/bin/apptainer --version
[2025-10-30 05:44:37] apptainer version 1.4.1-1.1
[2025-10-30 05:44:37] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-30 05:44:37] magicA246a
[2025-10-30 05:44:37] apptainer works
[2025-10-30 05:44:37] Set ATHENA_PROC_NUMBER=3
[2025-10-30 05:44:37] Set ATHENA_CORE_NUMBER=3
[2025-10-30 05:44:37] Starting ATLAS job with PandaID=6864949499
[2025-10-30 05:44:37] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-30 06:59:09]  *** The last 200 lines of the pilot log: ***
[2025-10-30 06:59:09] 2025-10-30 05:58:36,766 | INFO     | job 6864949499 has completed (purged errors)
[2025-10-30 06:59:09] 2025-10-30 05:58:36,766 | INFO     | overall cleanup function is called
[2025-10-30 06:59:09] 2025-10-30 05:58:37,773 | INFO     | --- collectZombieJob: --- 10, [82296]
[2025-10-30 06:59:09] 2025-10-30 05:58:37,773 | INFO     | zombie collector waiting for pid 82296
[2025-10-30 06:59:09] 2025-10-30 05:58:37,773 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-30 06:59:09] 2025-10-30 05:58:37,773 | INFO     | collected zombie processes
[2025-10-30 06:59:09] 2025-10-30 05:58:37,773 | INFO     | will attempt to kill all subprocesses of pid=82296
[2025-10-30 06:59:09] 2025-10-30 05:58:37,816 | INFO     | process IDs to be killed: [82296] (in reverse order)
[2025-10-30 06:59:09] 2025-10-30 05:58:37,840 | WARNING  | found no corresponding commands to process id(s)
[2025-10-30 06:59:09] 2025-10-30 05:58:37,840 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-30 06:59:09] 2025-10-30 05:58:37,842 | INFO     | did not find any defunct processes belonging to 82296
[2025-10-30 06:59:09] 2025-10-30 05:58:37,843 | INFO     | did not find any defunct processes belonging to 82296
[2025-10-30 06:59:09] 2025-10-30 05:58:37,843 | INFO     | ready for new job
[2025-10-30 06:59:09] 2025-10-30 05:58:37,843 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-30 06:59:09] 2025-10-30 05:58:37,844 | INFO     | ***************************************
[2025-10-30 06:59:09] 2025-10-30 05:58:37,844 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-30 06:59:09] 2025-10-30 05:58:37,844 | INFO     | ***************************************
[2025-10-30 06:59:09] 2025-10-30 05:58:37,844 | INFO     | 
[2025-10-30 06:59:09] 2025-10-30 05:58:37,844 | INFO     | architecture information:
[2025-10-30 06:59:09] 2025-10-30 05:58:37,844 | INFO     | executing command: cat /etc/os-release
[2025-10-30 06:59:09] 2025-10-30 05:58:37,853 | INFO     | cat /etc/os-release:
[2025-10-30 06:59:09] NAME="CentOS Linux"
[2025-10-30 06:59:09] VERSION="7 (Core)"
[2025-10-30 06:59:09] ID="centos"
[2025-10-30 06:59:09] ID_LIKE="rhel fedora"
[2025-10-30 06:59:09] VERSION_ID="7"
[2025-10-30 06:59:09] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-30 06:59:09] ANSI_COLOR="0;31"
[2025-10-30 06:59:09] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-30 06:59:09] HOME_URL="https://www.centos.org/"
[2025-10-30 06:59:09] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-30 06:59:09] 
[2025-10-30 06:59:09] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-30 06:59:09] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-30 06:59:09] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-30 06:59:09] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-30 06:59:09] 
[2025-10-30 06:59:09] 2025-10-30 05:58:37,853 | INFO     | ***************************************
[2025-10-30 06:59:09] 2025-10-30 05:58:38,357 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-10-30 06:59:09] 2025-10-30 05:58:38,369 | INFO     | sufficient remaining disk space (272801726464 B)
[2025-10-30 06:59:09] 2025-10-30 05:58:38,369 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-30 06:59:09] 2025-10-30 05:58:38,369 | INFO     | current server update state: UPDATING_FINAL
[2025-10-30 06:59:09] 2025-10-30 05:58:38,369 | INFO     | update_server=False
[2025-10-30 06:59:09] 2025-10-30 05:58:38,369 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-30 06:59:09] 2025-10-30 05:58:38,369 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-30 06:59:09] 2025-10-30 05:58:38,369 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-30 06:59:09] 2025-10-30 05:58:38,516 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-30 06:59:09] 2025-10-30 05:58:38,627 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-30 06:59:09] 2025-10-30 05:58:38,628 | INFO     | aborting loop
[2025-10-30 06:59:09] 2025-10-30 05:58:38,787 | INFO     | all payload control threads have been joined
[2025-10-30 06:59:09] 2025-10-30 05:58:38,954 | INFO     | all job control threads have been joined
[2025-10-30 06:59:09] 2025-10-30 05:58:39,371 | INFO     | all data control threads have been joined
[2025-10-30 06:59:09] 2025-10-30 05:58:39,375 | INFO     | [job] retrieve thread has finished
[2025-10-30 06:59:09] 2025-10-30 05:58:39,375 | INFO     | [job] queue monitor thread has finished
[2025-10-30 06:59:09] 2025-10-30 05:58:39,633 | INFO     | [job] job monitor thread has finished
[2025-10-30 06:59:09] 2025-10-30 05:58:39,764 | INFO     | [data] copytool_in thread has finished
[2025-10-30 06:59:09] 2025-10-30 05:58:39,793 | INFO     | [payload] control thread has finished
[2025-10-30 06:59:09] 2025-10-30 05:58:39,833 | INFO     | [payload] failed_post thread has finished
[2025-10-30 06:59:09] 2025-10-30 05:58:39,960 | INFO     | [job] control thread has finished
[2025-10-30 06:59:09] 2025-10-30 05:58:40,206 | INFO     | [payload] execute_payloads thread has finished
[2025-10-30 06:59:09] 2025-10-30 05:58:40,263 | INFO     | [job] validate thread has finished
[2025-10-30 06:59:09] 2025-10-30 05:58:40,366 | INFO     | [job] create_data_payload thread has finished
[2025-10-30 06:59:09] 2025-10-30 05:58:40,367 | INFO     | [payload] validate_pre thread has finished
[2025-10-30 06:59:09] 2025-10-30 05:58:40,376 | INFO     | [data] control thread has finished
[2025-10-30 06:59:09] 2025-10-30 05:58:40,523 | INFO     | [data] copytool_out thread has finished
[2025-10-30 06:59:09] 2025-10-30 05:58:40,832 | INFO     | [payload] validate_post thread has finished
[2025-10-30 06:59:09] 2025-10-30 05:58:42,376 | INFO     | [data] queue_monitor thread has finished
[2025-10-30 06:59:09] 2025-10-30 05:58:48,872 | INFO     | [monitor] cgroup control has ended
[2025-10-30 06:59:09] 2025-10-30 05:58:49,038 | INFO     | job.realtimelogging is not enabled
[2025-10-30 06:59:09] 2025-10-30 05:58:50,044 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-30 06:59:09] 2025-10-30 05:58:51,237 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140513740912448)>', '<ExcThread(monitor, started 140513235674880)>']
[2025-10-30 06:59:09] 2025-10-30 05:58:56,258 | INFO     | all workflow threads have been joined
[2025-10-30 06:59:09] 2025-10-30 05:58:56,258 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-30 06:59:09] 2025-10-30 05:58:56,259 | INFO     | traces error code: 0
[2025-10-30 06:59:09] 2025-10-30 05:58:56,259 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-30 06:59:09] 2025-10-30 05:59:08,925 | INFO     | PID=75861 has CPU usage=1.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-10-30 06:59:09] 2025-10-30 05:59:08,925 | INFO     | found 0 job(s) in 20 queues
[2025-10-30 06:59:09] 2025-10-30 05:59:08,925 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-30 06:59:09] 2025-10-30 05:59:08,925 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-30 06:59:09] 2025-10-30 05:59:08,925 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-30 06:59:09] 2025-10-30 05:59:08,925 | INFO     | [monitor] control thread has ended
[2025-10-30 06:59:09] 2025-10-30 05:59:08,973 [wrapper] ==== pilot stdout END ====
[2025-10-30 06:59:09] 2025-10-30 05:59:08,976 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-30 06:59:09] 2025-10-30 05:59:08,978 [wrapper] pilotpid: 75861
[2025-10-30 06:59:09] 2025-10-30 05:59:08,980 [wrapper] Pilot exit status: 0
[2025-10-30 06:59:09] 2025-10-30 05:59:08,987 [wrapper] pandaids: 6864949499
[2025-10-30 06:59:09] 2025-10-30 05:59:09,004 [wrapper] cleanup supervisor_pilot   92351 75862
[2025-10-30 06:59:09] 2025-10-30 05:59:09,006 [wrapper] Test setup, not cleaning
[2025-10-30 06:59:09] 2025-10-30 05:59:09,009 [wrapper] apfmon messages muted
[2025-10-30 06:59:09] 2025-10-30 05:59:09,011 [wrapper] ==== wrapper stdout END ====
[2025-10-30 06:59:09] 2025-10-30 05:59:09,013 [wrapper] ==== wrapper stderr END ====
[2025-10-30 06:59:09]  *** Error codes and diagnostics ***
[2025-10-30 06:59:09]     "exeErrorCode": 0,
[2025-10-30 06:59:09]     "exeErrorDiag": "",
[2025-10-30 06:59:09]     "pilotErrorCode": 0,
[2025-10-30 06:59:09]     "pilotErrorDiag": "",
[2025-10-30 06:59:09]  *** Listing of results directory ***
[2025-10-30 06:59:09] total 396484
[2025-10-30 06:59:09] -rw-r--r-- 1 boinc boinc    557409 Oct 29 19:44 pilot3.tar.gz
[2025-10-30 06:59:09] -rwx------ 1 boinc boinc     36292 Oct 29 19:49 runpilot2-wrapper.sh
[2025-10-30 06:59:09] -rw-r--r-- 1 boinc boinc      5112 Oct 29 19:49 queuedata.json
[2025-10-30 06:59:09] -rw-r--r-- 1 boinc boinc       100 Oct 30 05:44 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-30 06:59:09] -rwxr-xr-x 1 boinc boinc      7986 Oct 30 05:44 run_atlas
[2025-10-30 06:59:09] -rw-r--r-- 1 boinc boinc       105 Oct 30 05:44 job.xml
[2025-10-30 06:59:09] -rw-r--r-- 2 boinc boinc 217719487 Oct 30 05:44 EVNT.47081487._001107.pool.root.1
[2025-10-30 06:59:09] drwxrwx--x 2 boinc boinc      4096 Oct 30 05:44 shared
[2025-10-30 06:59:09] -rw-r--r-- 2 boinc boinc    569671 Oct 30 05:44 input.tar.gz
[2025-10-30 06:59:09] -rw-r--r-- 2 boinc boinc     15120 Oct 30 05:44 start_atlas.sh
[2025-10-30 06:59:09] -rw-r--r-- 1 boinc boinc         0 Oct 30 05:44 boinc_setup_complete
[2025-10-30 06:59:09] -rw-r--r-- 1 boinc boinc      6447 Oct 30 05:44 init_data.xml
[2025-10-30 06:59:09] -rw-r--r-- 1 boinc boinc         0 Oct 30 05:44 boinc_lockfile
[2025-10-30 06:59:09] -rw-r--r-- 1 boinc boinc      2527 Oct 30 05:44 pandaJob.out
[2025-10-30 06:59:09] -rw------- 1 boinc boinc    987264 Oct 30 05:44 agis_schedconf.cvmfs.json
[2025-10-30 06:59:09] -rw------- 1 boinc boinc   1560632 Oct 30 05:44 agis_ddmendpoints.agis.ALL.json
[2025-10-30 06:59:09] drwx------ 5 boinc boinc      4096 Oct 30 05:44 pilot3
[2025-10-30 06:59:09] -rw-r--r-- 1 boinc boinc       529 Oct 30 06:58 boinc_task_state.xml
[2025-10-30 06:59:09] -rw------- 1 boinc boinc 182548262 Oct 30 06:58 HITS.47081490._028450.pool.root.1
[2025-10-30 06:59:09] -rw------- 1 boinc boinc      1013 Oct 30 06:58 memory_monitor_summary.json
[2025-10-30 06:59:09] -rw------- 1 boinc boinc    260755 Oct 30 06:58 log.47081490._028450.job.log.tgz.1
[2025-10-30 06:59:09] -rw------- 1 boinc boinc      7763 Oct 30 06:58 heartbeat.json
[2025-10-30 06:59:09] -rw-r--r-- 1 boinc boinc      8192 Oct 30 06:58 boinc_mmap_file
[2025-10-30 06:59:09] -rw-r--r-- 1 boinc boinc        27 Oct 30 06:58 wrapper_checkpoint.txt
[2025-10-30 06:59:09] -rw------- 1 boinc boinc       745 Oct 30 06:59 pilotlog.txt
[2025-10-30 06:59:09] -rw------- 1 boinc boinc        95 Oct 30 06:59 pilot_heartbeat.json
[2025-10-30 06:59:09] -rw------- 1 boinc boinc    655164 Oct 30 06:59 log.47081490._028450.job.log.1
[2025-10-30 06:59:09] -rw------- 1 boinc boinc       357 Oct 30 06:59 output.list
[2025-10-30 06:59:09] -rw-r--r-- 1 boinc boinc       620 Oct 30 06:59 runtime_log
[2025-10-30 06:59:09] -rw------- 1 boinc boinc    931840 Oct 30 06:59 result.tar.gz
[2025-10-30 06:59:09] -rw-r--r-- 1 boinc boinc      8797 Oct 30 06:59 runtime_log.err
[2025-10-30 06:59:09] -rw------- 1 boinc boinc       662 Oct 30 06:59 j0BODm1PQY8n9Rq4apOajLDm4fhM0noT9bVof3QYDmNPqMDmoYXC1n.diag
[2025-10-30 06:59:09] -rw-r--r-- 1 boinc boinc     10889 Oct 30 06:59 stderr.txt
[2025-10-30 06:59:09] HITS file was successfully produced:
[2025-10-30 06:59:09] -rw------- 1 boinc boinc 182548262 Oct 30 06:58 shared/HITS.pool.root.1
[2025-10-30 06:59:09]  *** Contents of shared directory: ***
[2025-10-30 06:59:09] total 392388
[2025-10-30 06:59:09] -rw-r--r-- 2 boinc boinc 217719487 Oct 30 05:44 ATLAS.root_0
[2025-10-30 06:59:09] -rw-r--r-- 2 boinc boinc    569671 Oct 30 05:44 input.tar.gz
[2025-10-30 06:59:09] -rw-r--r-- 2 boinc boinc     15120 Oct 30 05:44 start_atlas.sh
[2025-10-30 06:59:09] -rw------- 1 boinc boinc 182548262 Oct 30 06:58 HITS.pool.root.1
[2025-10-30 06:59:09] -rw------- 1 boinc boinc    931840 Oct 30 06:59 result.tar.gz
06:59:10 (72139): run_atlas exited; CPU time 12623.819287
06:59:10 (72139): called boinc_finish(0)

</stderr_txt>
]]>

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