Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
03:16:44 (22430): wrapper (7.7.26015): starting
03:16:44 (22430): wrapper: running run_atlas (--nthreads 3)
[2025-10-30 03:16:44] Arguments: --nthreads 3
[2025-10-30 03:16:44] Threads: 3
[2025-10-30 03:16:44] Checking for CVMFS
[2025-10-30 03:16:44] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-30 03:16:44] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-30 03:16:44] Running cvmfs_config stat atlas.cern.ch
[2025-10-30 03:16:44] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-30 03:16:44] 2.9.2.0 3842054 1098 76100 152284 0 57 33010825 36864000 0 130560 0 982490 99.988 40735 1379 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-10-30 03:16:44] CVMFS is ok
[2025-10-30 03:16:44] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-30 03:16:44] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-30 03:16:44] Further information can be found at the LHC@home message board.
[2025-10-30 03:16:44] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-30 03:16:44] Checking for apptainer binary...
[2025-10-30 03:16:44] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-30 03:16:44] Running /usr/bin/apptainer --version
[2025-10-30 03:16:44] apptainer version 1.4.1-1.1
[2025-10-30 03:16:44] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-30 03:16:44] magicA246a
[2025-10-30 03:16:44] apptainer works
[2025-10-30 03:16:44] Set ATHENA_PROC_NUMBER=3
[2025-10-30 03:16:44] Set ATHENA_CORE_NUMBER=3
[2025-10-30 03:16:44] Starting ATLAS job with PandaID=6864842452
[2025-10-30 03:16:44] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-30 04:29:10]  *** The last 200 lines of the pilot log: ***
[2025-10-30 04:29:10] 2025-10-30 03:28:38,998 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-30 04:29:10] 2025-10-30 03:28:38,998 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-30 04:29:10] 2025-10-30 03:28:38,998 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-30 04:29:10] 2025-10-30 03:28:38,998 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-30 04:29:10] 2025-10-30 03:28:38,998 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-30 04:29:10] 2025-10-30 03:28:38,998 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-30 04:29:10] 2025-10-30 03:28:38,998 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-30 04:29:10] 2025-10-30 03:28:38,998 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-30 04:29:10] 2025-10-30 03:28:38,998 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-30 04:29:10] 2025-10-30 03:28:38,998 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-30 04:29:10] 2025-10-30 03:28:38,998 | INFO     | job 6864842452 has completed (purged errors)
[2025-10-30 04:29:10] 2025-10-30 03:28:38,998 | INFO     | overall cleanup function is called
[2025-10-30 04:29:10] 2025-10-30 03:28:40,005 | INFO     | --- collectZombieJob: --- 10, [32579]
[2025-10-30 04:29:10] 2025-10-30 03:28:40,005 | INFO     | zombie collector waiting for pid 32579
[2025-10-30 04:29:10] 2025-10-30 03:28:40,005 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-30 04:29:10] 2025-10-30 03:28:40,005 | INFO     | collected zombie processes
[2025-10-30 04:29:10] 2025-10-30 03:28:40,005 | INFO     | will attempt to kill all subprocesses of pid=32579
[2025-10-30 04:29:10] 2025-10-30 03:28:40,048 | INFO     | process IDs to be killed: [32579] (in reverse order)
[2025-10-30 04:29:10] 2025-10-30 03:28:40,071 | WARNING  | found no corresponding commands to process id(s)
[2025-10-30 04:29:10] 2025-10-30 03:28:40,072 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-30 04:29:10] 2025-10-30 03:28:40,073 | INFO     | did not find any defunct processes belonging to 32579
[2025-10-30 04:29:10] 2025-10-30 03:28:40,074 | INFO     | did not find any defunct processes belonging to 32579
[2025-10-30 04:29:10] 2025-10-30 03:28:40,074 | INFO     | ready for new job
[2025-10-30 04:29:10] 2025-10-30 03:28:40,074 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-30 04:29:10] 2025-10-30 03:28:40,075 | INFO     | ***************************************
[2025-10-30 04:29:10] 2025-10-30 03:28:40,075 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-30 04:29:10] 2025-10-30 03:28:40,075 | INFO     | ***************************************
[2025-10-30 04:29:10] 2025-10-30 03:28:40,075 | INFO     | 
[2025-10-30 04:29:10] 2025-10-30 03:28:40,075 | INFO     | architecture information:
[2025-10-30 04:29:10] 2025-10-30 03:28:40,075 | INFO     | executing command: cat /etc/os-release
[2025-10-30 04:29:10] 2025-10-30 03:28:40,083 | INFO     | cat /etc/os-release:
[2025-10-30 04:29:10] NAME="CentOS Linux"
[2025-10-30 04:29:10] VERSION="7 (Core)"
[2025-10-30 04:29:10] ID="centos"
[2025-10-30 04:29:10] ID_LIKE="rhel fedora"
[2025-10-30 04:29:10] VERSION_ID="7"
[2025-10-30 04:29:10] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-30 04:29:10] ANSI_COLOR="0;31"
[2025-10-30 04:29:10] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-30 04:29:10] HOME_URL="https://www.centos.org/"
[2025-10-30 04:29:10] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-30 04:29:10] 
[2025-10-30 04:29:10] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-30 04:29:10] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-30 04:29:10] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-30 04:29:10] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-30 04:29:10] 
[2025-10-30 04:29:10] 2025-10-30 03:28:40,084 | INFO     | ***************************************
[2025-10-30 04:29:10] 2025-10-30 03:28:40,587 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-10-30 04:29:10] 2025-10-30 03:28:40,599 | INFO     | sufficient remaining disk space (272406413312 B)
[2025-10-30 04:29:10] 2025-10-30 03:28:40,599 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-30 04:29:10] 2025-10-30 03:28:40,600 | INFO     | current server update state: UPDATING_FINAL
[2025-10-30 04:29:10] 2025-10-30 03:28:40,600 | INFO     | update_server=False
[2025-10-30 04:29:10] 2025-10-30 03:28:40,600 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-30 04:29:10] 2025-10-30 03:28:40,600 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-30 04:29:10] 2025-10-30 03:28:40,600 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-30 04:29:10] 2025-10-30 03:28:40,600 | INFO     | aborting loop
[2025-10-30 04:29:10] 2025-10-30 03:28:40,861 | INFO     | all payload control threads have been joined
[2025-10-30 04:29:10] 2025-10-30 03:28:41,386 | INFO     | all job control threads have been joined
[2025-10-30 04:29:10] 2025-10-30 03:28:41,575 | INFO     | all data control threads have been joined
[2025-10-30 04:29:10] 2025-10-30 03:28:41,603 | INFO     | [job] retrieve thread has finished
[2025-10-30 04:29:10] 2025-10-30 03:28:41,604 | INFO     | [job] job monitor thread has finished
[2025-10-30 04:29:10] 2025-10-30 03:28:41,605 | INFO     | [job] queue monitor thread has finished
[2025-10-30 04:29:10] 2025-10-30 03:28:41,744 | INFO     | [payload] failed_post thread has finished
[2025-10-30 04:29:10] 2025-10-30 03:28:41,792 | INFO     | [payload] execute_payloads thread has finished
[2025-10-30 04:29:10] 2025-10-30 03:28:41,863 | INFO     | [payload] control thread has finished
[2025-10-30 04:29:10] 2025-10-30 03:28:41,891 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-30 04:29:10] 2025-10-30 03:28:41,952 | INFO     | [data] copytool_in thread has finished
[2025-10-30 04:29:10] 2025-10-30 03:28:42,392 | INFO     | [job] control thread has finished
[2025-10-30 04:29:10] 2025-10-30 03:28:42,516 | INFO     | [job] validate thread has finished
[2025-10-30 04:29:10] 2025-10-30 03:28:42,522 | INFO     | [payload] validate_post thread has finished
[2025-10-30 04:29:10] 2025-10-30 03:28:42,581 | INFO     | [data] control thread has finished
[2025-10-30 04:29:10] 2025-10-30 03:28:42,618 | INFO     | [job] create_data_payload thread has finished
[2025-10-30 04:29:10] 2025-10-30 03:28:42,622 | INFO     | [payload] validate_pre thread has finished
[2025-10-30 04:29:10] 2025-10-30 03:28:43,296 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-30 04:29:10] 2025-10-30 03:28:43,898 | INFO     | [data] copytool_out thread has finished
[2025-10-30 04:29:10] 2025-10-30 03:28:47,303 | INFO     | [data] queue_monitor thread has finished
[2025-10-30 04:29:10] 2025-10-30 03:28:51,175 | INFO     | job.realtimelogging is not enabled
[2025-10-30 04:29:10] 2025-10-30 03:28:52,180 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-30 04:29:10] 2025-10-30 03:28:56,046 | INFO     | [monitor] cgroup control has ended
[2025-10-30 04:29:10] 2025-10-30 03:28:57,141 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140114090608448)>', '<ExcThread(monitor, started 140113736607488)>']
[2025-10-30 04:29:10] 2025-10-30 03:29:02,153 | INFO     | all workflow threads have been joined
[2025-10-30 04:29:10] 2025-10-30 03:29:02,153 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-30 04:29:10] 2025-10-30 03:29:02,153 | INFO     | traces error code: 0
[2025-10-30 04:29:10] 2025-10-30 03:29:02,153 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-30 04:29:10] 2025-10-30 03:29:10,800 | INFO     | PID=26147 has CPU usage=1.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-10-30 04:29:10] 2025-10-30 03:29:10,801 | INFO     | found 0 job(s) in 20 queues
[2025-10-30 04:29:10] 2025-10-30 03:29:10,801 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-30 04:29:10] 2025-10-30 03:29:10,801 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-30 04:29:10] 2025-10-30 03:29:10,801 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-30 04:29:10] 2025-10-30 03:29:10,801 | CRITICAL | thread 'MainThread' is not alive
[2025-10-30 04:29:10] 2025-10-30 03:29:10,801 | INFO     | [monitor] control thread has ended
[2025-10-30 04:29:10] 2025-10-30 03:29:10,850 [wrapper] ==== pilot stdout END ====
[2025-10-30 04:29:10] 2025-10-30 03:29:10,852 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-30 04:29:10] 2025-10-30 03:29:10,855 [wrapper] pilotpid: 26147
[2025-10-30 04:29:10] 2025-10-30 03:29:10,857 [wrapper] Pilot exit status: 0
[2025-10-30 04:29:10] 2025-10-30 03:29:10,864 [wrapper] pandaids: 6864842452
[2025-10-30 04:29:10] 2025-10-30 03:29:10,880 [wrapper] cleanup supervisor_pilot   42078 26148
[2025-10-30 04:29:10] 2025-10-30 03:29:10,882 [wrapper] Test setup, not cleaning
[2025-10-30 04:29:10] 2025-10-30 03:29:10,885 [wrapper] apfmon messages muted
[2025-10-30 04:29:10] 2025-10-30 03:29:10,887 [wrapper] ==== wrapper stdout END ====
[2025-10-30 04:29:10] 2025-10-30 03:29:10,890 [wrapper] ==== wrapper stderr END ====
[2025-10-30 04:29:10]  *** Error codes and diagnostics ***
[2025-10-30 04:29:10]     "exeErrorCode": 0,
[2025-10-30 04:29:10]     "exeErrorDiag": "",
[2025-10-30 04:29:10]     "pilotErrorCode": 0,
[2025-10-30 04:29:10]     "pilotErrorDiag": "",
[2025-10-30 04:29:10]  *** Listing of results directory ***
[2025-10-30 04:29:10] total 386116
[2025-10-30 04:29:10] -rw-r--r-- 1 boinc boinc    557409 Oct 29 17:08 pilot3.tar.gz
[2025-10-30 04:29:10] -rw-r--r-- 1 boinc boinc      5112 Oct 29 17:15 queuedata.json
[2025-10-30 04:29:10] -rwx------ 1 boinc boinc     36292 Oct 29 17:15 runpilot2-wrapper.sh
[2025-10-30 04:29:10] -rw-r--r-- 1 boinc boinc       100 Oct 30 03:16 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-30 04:29:10] -rwxr-xr-x 1 boinc boinc      7986 Oct 30 03:16 run_atlas
[2025-10-30 04:29:10] -rw-r--r-- 1 boinc boinc       105 Oct 30 03:16 job.xml
[2025-10-30 04:29:10] -rw-r--r-- 2 boinc boinc 213189368 Oct 30 03:16 EVNT.47081487._000937.pool.root.1
[2025-10-30 04:29:10] drwxrwx--x 2 boinc boinc      4096 Oct 30 03:16 shared
[2025-10-30 04:29:10] -rw-r--r-- 2 boinc boinc    569675 Oct 30 03:16 input.tar.gz
[2025-10-30 04:29:10] -rw-r--r-- 2 boinc boinc     15120 Oct 30 03:16 start_atlas.sh
[2025-10-30 04:29:10] -rw-r--r-- 1 boinc boinc         0 Oct 30 03:16 boinc_setup_complete
[2025-10-30 04:29:10] -rw-r--r-- 1 boinc boinc      6447 Oct 30 03:16 init_data.xml
[2025-10-30 04:29:10] -rw-r--r-- 1 boinc boinc         0 Oct 30 03:16 boinc_lockfile
[2025-10-30 04:29:10] -rw-r--r-- 1 boinc boinc      2526 Oct 30 03:16 pandaJob.out
[2025-10-30 04:29:10] -rw------- 1 boinc boinc    987264 Oct 30 03:16 agis_schedconf.cvmfs.json
[2025-10-30 04:29:10] -rw------- 1 boinc boinc   1560632 Oct 30 03:16 agis_ddmendpoints.agis.ALL.json
[2025-10-30 04:29:10] drwx------ 5 boinc boinc      4096 Oct 30 03:16 pilot3
[2025-10-30 04:29:10] -rw------- 1 boinc boinc        95 Oct 30 04:28 pilot_heartbeat.json
[2025-10-30 04:29:10] -rw------- 1 boinc boinc 176527141 Oct 30 04:28 HITS.47081490._023354.pool.root.1
[2025-10-30 04:29:10] -rw-r--r-- 1 boinc boinc       529 Oct 30 04:28 boinc_task_state.xml
[2025-10-30 04:29:10] -rw------- 1 boinc boinc      1013 Oct 30 04:28 memory_monitor_summary.json
[2025-10-30 04:29:10] -rw------- 1 boinc boinc    242647 Oct 30 04:28 log.47081490._023354.job.log.tgz.1
[2025-10-30 04:29:10] -rw------- 1 boinc boinc      7757 Oct 30 04:28 heartbeat.json
[2025-10-30 04:29:10] -rw-r--r-- 1 boinc boinc      8192 Oct 30 04:28 boinc_mmap_file
[2025-10-30 04:29:10] -rw-r--r-- 1 boinc boinc        27 Oct 30 04:28 wrapper_checkpoint.txt
[2025-10-30 04:29:10] -rw------- 1 boinc boinc       815 Oct 30 04:29 pilotlog.txt
[2025-10-30 04:29:10] -rw------- 1 boinc boinc    637907 Oct 30 04:29 log.47081490._023354.job.log.1
[2025-10-30 04:29:10] -rw------- 1 boinc boinc       357 Oct 30 04:29 output.list
[2025-10-30 04:29:10] -rw-r--r-- 1 boinc boinc       620 Oct 30 04:29 runtime_log
[2025-10-30 04:29:10] -rw------- 1 boinc boinc    901120 Oct 30 04:29 result.tar.gz
[2025-10-30 04:29:10] -rw------- 1 boinc boinc       662 Oct 30 04:29 u2NMDmE1NY8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmfOIODm7W2fLn.diag
[2025-10-30 04:29:10] -rw-r--r-- 1 boinc boinc      8797 Oct 30 04:29 runtime_log.err
[2025-10-30 04:29:10] -rw-r--r-- 1 boinc boinc     11997 Oct 30 04:29 stderr.txt
[2025-10-30 04:29:10] HITS file was successfully produced:
[2025-10-30 04:29:10] -rw------- 1 boinc boinc 176527141 Oct 30 04:28 shared/HITS.pool.root.1
[2025-10-30 04:29:10]  *** Contents of shared directory: ***
[2025-10-30 04:29:10] total 382052
[2025-10-30 04:29:10] -rw-r--r-- 2 boinc boinc 213189368 Oct 30 03:16 ATLAS.root_0
[2025-10-30 04:29:10] -rw-r--r-- 2 boinc boinc    569675 Oct 30 03:16 input.tar.gz
[2025-10-30 04:29:10] -rw-r--r-- 2 boinc boinc     15120 Oct 30 03:16 start_atlas.sh
[2025-10-30 04:29:10] -rw------- 1 boinc boinc 176527141 Oct 30 04:28 HITS.pool.root.1
[2025-10-30 04:29:10] -rw------- 1 boinc boinc    901120 Oct 30 04:29 result.tar.gz
04:29:12 (22430): run_atlas exited; CPU time 12199.943738
04:29:12 (22430): called boinc_finish(0)

</stderr_txt>
]]>

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