Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
00:50:23 (4166313): wrapper (7.7.26015): starting
00:50:23 (4166313): wrapper: running run_atlas (--nthreads 3)
[2025-10-30 00:50:23] Arguments: --nthreads 3
[2025-10-30 00:50:23] Threads: 3
[2025-10-30 00:50:23] Checking for CVMFS
[2025-10-30 00:50:23] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-30 00:50:23] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-30 00:50:23] Running cvmfs_config stat atlas.cern.ch
[2025-10-30 00:50:23] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-30 00:50:23] 2.9.2.0 3842054 951 75112 152282 2 57 33000988 36864000 0 130560 0 851495 99.987 37992 1440 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-10-30 00:50:23] CVMFS is ok
[2025-10-30 00:50:23] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-30 00:50:23] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-30 00:50:23] Further information can be found at the LHC@home message board.
[2025-10-30 00:50:23] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-30 00:50:23] Checking for apptainer binary...
[2025-10-30 00:50:23] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-30 00:50:23] Running /usr/bin/apptainer --version
[2025-10-30 00:50:24] apptainer version 1.4.1-1.1
[2025-10-30 00:50:24] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-30 00:50:24] magicA246a
[2025-10-30 00:50:24] apptainer works
[2025-10-30 00:50:24] Set ATHENA_PROC_NUMBER=3
[2025-10-30 00:50:24] Set ATHENA_CORE_NUMBER=3
[2025-10-30 00:50:24] Starting ATLAS job with PandaID=6864839520
[2025-10-30 00:50:24] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-30 02:03:39]  *** The last 200 lines of the pilot log: ***
[2025-10-30 02:03:39] 2025-10-30 01:02:58,421 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-30 02:03:39] 2025-10-30 01:02:58,421 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-30 02:03:39] 2025-10-30 01:02:58,421 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-30 02:03:39] 2025-10-30 01:02:58,422 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-30 02:03:39] 2025-10-30 01:02:58,422 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-30 02:03:39] 2025-10-30 01:02:58,422 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-30 02:03:39] 2025-10-30 01:02:58,422 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-30 02:03:39] 2025-10-30 01:02:58,422 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-30 02:03:39] 2025-10-30 01:02:58,422 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-30 02:03:39] 2025-10-30 01:02:58,422 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-30 02:03:39] 2025-10-30 01:02:58,422 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-30 02:03:39] 2025-10-30 01:02:58,422 | INFO     | job 6864839520 has completed (purged errors)
[2025-10-30 02:03:39] 2025-10-30 01:02:58,422 | INFO     | overall cleanup function is called
[2025-10-30 02:03:39] 2025-10-30 01:02:59,428 | INFO     | --- collectZombieJob: --- 10, [4176467]
[2025-10-30 02:03:39] 2025-10-30 01:02:59,429 | INFO     | zombie collector waiting for pid 4176467
[2025-10-30 02:03:39] 2025-10-30 01:02:59,429 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-30 02:03:39] 2025-10-30 01:02:59,429 | INFO     | collected zombie processes
[2025-10-30 02:03:39] 2025-10-30 01:02:59,429 | INFO     | will attempt to kill all subprocesses of pid=4176467
[2025-10-30 02:03:39] 2025-10-30 01:02:59,473 | INFO     | process IDs to be killed: [4176467] (in reverse order)
[2025-10-30 02:03:39] 2025-10-30 01:02:59,497 | WARNING  | found no corresponding commands to process id(s)
[2025-10-30 02:03:39] 2025-10-30 01:02:59,497 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-30 02:03:39] 2025-10-30 01:02:59,498 | INFO     | did not find any defunct processes belonging to 4176467
[2025-10-30 02:03:39] 2025-10-30 01:02:59,500 | INFO     | did not find any defunct processes belonging to 4176467
[2025-10-30 02:03:39] 2025-10-30 01:02:59,500 | INFO     | ready for new job
[2025-10-30 02:03:39] 2025-10-30 01:02:59,500 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-30 02:03:39] 2025-10-30 01:02:59,500 | INFO     | ***************************************
[2025-10-30 02:03:39] 2025-10-30 01:02:59,500 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-30 02:03:39] 2025-10-30 01:02:59,500 | INFO     | ***************************************
[2025-10-30 02:03:39] 2025-10-30 01:02:59,500 | INFO     | 
[2025-10-30 02:03:39] 2025-10-30 01:02:59,501 | INFO     | architecture information:
[2025-10-30 02:03:39] 2025-10-30 01:02:59,501 | INFO     | executing command: cat /etc/os-release
[2025-10-30 02:03:39] 2025-10-30 01:02:59,509 | INFO     | cat /etc/os-release:
[2025-10-30 02:03:39] NAME="CentOS Linux"
[2025-10-30 02:03:39] VERSION="7 (Core)"
[2025-10-30 02:03:39] ID="centos"
[2025-10-30 02:03:39] ID_LIKE="rhel fedora"
[2025-10-30 02:03:39] VERSION_ID="7"
[2025-10-30 02:03:39] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-30 02:03:39] ANSI_COLOR="0;31"
[2025-10-30 02:03:39] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-30 02:03:39] HOME_URL="https://www.centos.org/"
[2025-10-30 02:03:39] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-30 02:03:39] 
[2025-10-30 02:03:39] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-30 02:03:39] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-30 02:03:39] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-30 02:03:39] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-30 02:03:39] 
[2025-10-30 02:03:39] 2025-10-30 01:02:59,509 | INFO     | ***************************************
[2025-10-30 02:03:39] 2025-10-30 01:03:00,013 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-10-30 02:03:39] 2025-10-30 01:03:00,025 | INFO     | sufficient remaining disk space (271986982912 B)
[2025-10-30 02:03:39] 2025-10-30 01:03:00,025 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-30 02:03:39] 2025-10-30 01:03:00,025 | INFO     | current server update state: UPDATING_FINAL
[2025-10-30 02:03:39] 2025-10-30 01:03:00,025 | INFO     | update_server=False
[2025-10-30 02:03:39] 2025-10-30 01:03:00,026 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-30 02:03:39] 2025-10-30 01:03:00,026 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-30 02:03:39] 2025-10-30 01:03:00,661 | INFO     | all data control threads have been joined
[2025-10-30 02:03:39] 2025-10-30 01:03:00,784 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-30 02:03:39] 2025-10-30 01:03:00,784 | INFO     | aborting loop
[2025-10-30 02:03:39] 2025-10-30 01:03:00,851 | INFO     | all payload control threads have been joined
[2025-10-30 02:03:39] 2025-10-30 01:03:01,031 | INFO     | [job] retrieve thread has finished
[2025-10-30 02:03:39] 2025-10-30 01:03:01,032 | INFO     | [job] queue monitor thread has finished
[2025-10-30 02:03:39] 2025-10-30 01:03:01,194 | INFO     | [payload] failed_post thread has finished
[2025-10-30 02:03:39] 2025-10-30 01:03:01,319 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-30 02:03:39] 2025-10-30 01:03:01,468 | INFO     | [payload] execute_payloads thread has finished
[2025-10-30 02:03:39] 2025-10-30 01:03:01,666 | INFO     | [data] control thread has finished
[2025-10-30 02:03:39] 2025-10-30 01:03:01,672 | INFO     | all job control threads have been joined
[2025-10-30 02:03:39] 2025-10-30 01:03:01,790 | INFO     | [job] job monitor thread has finished
[2025-10-30 02:03:39] 2025-10-30 01:03:01,856 | INFO     | [payload] control thread has finished
[2025-10-30 02:03:39] 2025-10-30 01:03:01,884 | INFO     | [data] copytool_in thread has finished
[2025-10-30 02:03:39] 2025-10-30 01:03:02,201 | INFO     | [payload] validate_post thread has finished
[2025-10-30 02:03:39] 2025-10-30 01:03:02,409 | INFO     | [job] validate thread has finished
[2025-10-30 02:03:39] 2025-10-30 01:03:02,516 | INFO     | [job] create_data_payload thread has finished
[2025-10-30 02:03:39] 2025-10-30 01:03:02,516 | INFO     | [payload] validate_pre thread has finished
[2025-10-30 02:03:39] 2025-10-30 01:03:02,678 | INFO     | [job] control thread has finished
[2025-10-30 02:03:39] 2025-10-30 01:03:03,185 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-30 02:03:39] 2025-10-30 01:03:03,325 | INFO     | [data] copytool_out thread has finished
[2025-10-30 02:03:39] 2025-10-30 01:03:07,193 | INFO     | [data] queue_monitor thread has finished
[2025-10-30 02:03:39] 2025-10-30 01:03:10,770 | INFO     | job.realtimelogging is not enabled
[2025-10-30 02:03:39] 2025-10-30 01:03:11,776 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-30 02:03:39] 2025-10-30 01:03:30,819 | INFO     | PID=4170031 has CPU usage=1.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-30 02:03:39] 2025-10-30 01:03:30,819 | INFO     | found 0 job(s) in 20 queues
[2025-10-30 02:03:39] 2025-10-30 01:03:30,819 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-30 02:03:39] 2025-10-30 01:03:30,819 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-30 02:03:39] 2025-10-30 01:03:34,294 | INFO     | [monitor] cgroup control has ended
[2025-10-30 02:03:39] 2025-10-30 01:03:34,516 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140639459993408)>', '<ExcThread(monitor, started 140638821537536)>']
[2025-10-30 02:03:39] 2025-10-30 01:03:34,841 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-30 02:03:39] 2025-10-30 01:03:34,841 | INFO     | [monitor] control thread has ended
[2025-10-30 02:03:39] 2025-10-30 01:03:39,519 | INFO     | all workflow threads have been joined
[2025-10-30 02:03:39] 2025-10-30 01:03:39,519 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-30 02:03:39] 2025-10-30 01:03:39,519 | INFO     | traces error code: 0
[2025-10-30 02:03:39] 2025-10-30 01:03:39,519 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-30 02:03:39] 2025-10-30 01:03:39,572 [wrapper] ==== pilot stdout END ====
[2025-10-30 02:03:39] 2025-10-30 01:03:39,574 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-30 02:03:39] 2025-10-30 01:03:39,577 [wrapper] pilotpid: 4170031
[2025-10-30 02:03:39] 2025-10-30 01:03:39,579 [wrapper] Pilot exit status: 0
[2025-10-30 02:03:39] 2025-10-30 01:03:39,586 [wrapper] pandaids: 6864839520
[2025-10-30 02:03:39] 2025-10-30 01:03:39,602 [wrapper] cleanup supervisor_pilot 4186268 4170032
[2025-10-30 02:03:39] 2025-10-30 01:03:39,605 [wrapper] Test setup, not cleaning
[2025-10-30 02:03:39] 2025-10-30 01:03:39,607 [wrapper] apfmon messages muted
[2025-10-30 02:03:39] 2025-10-30 01:03:39,609 [wrapper] ==== wrapper stdout END ====
[2025-10-30 02:03:39] 2025-10-30 01:03:39,612 [wrapper] ==== wrapper stderr END ====
[2025-10-30 02:03:39]  *** Error codes and diagnostics ***
[2025-10-30 02:03:39]     "exeErrorCode": 0,
[2025-10-30 02:03:39]     "exeErrorDiag": "",
[2025-10-30 02:03:39]     "pilotErrorCode": 0,
[2025-10-30 02:03:39]     "pilotErrorDiag": "",
[2025-10-30 02:03:39]  *** Listing of results directory ***
[2025-10-30 02:03:39] total 388900
[2025-10-30 02:03:39] -rw-r--r-- 1 boinc boinc    557409 Oct 29 15:53 pilot3.tar.gz
[2025-10-30 02:03:39] -rw-r--r-- 1 boinc boinc      5112 Oct 29 15:58 queuedata.json
[2025-10-30 02:03:39] -rwx------ 1 boinc boinc     36292 Oct 29 16:00 runpilot2-wrapper.sh
[2025-10-30 02:03:39] -rw-r--r-- 1 boinc boinc       100 Oct 30 00:50 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-30 02:03:39] -rwxr-xr-x 1 boinc boinc      7986 Oct 30 00:50 run_atlas
[2025-10-30 02:03:39] -rw-r--r-- 1 boinc boinc       105 Oct 30 00:50 job.xml
[2025-10-30 02:03:39] -rw-r--r-- 2 boinc boinc 214513192 Oct 30 00:50 EVNT.47081487._000842.pool.root.1
[2025-10-30 02:03:39] -rw-r--r-- 2 boinc boinc    569679 Oct 30 00:50 input.tar.gz
[2025-10-30 02:03:39] -rw-r--r-- 2 boinc boinc     15120 Oct 30 00:50 start_atlas.sh
[2025-10-30 02:03:39] drwxrwx--x 2 boinc boinc      4096 Oct 30 00:50 shared
[2025-10-30 02:03:39] -rw-r--r-- 1 boinc boinc         0 Oct 30 00:50 boinc_setup_complete
[2025-10-30 02:03:39] -rw-r--r-- 1 boinc boinc      6447 Oct 30 00:50 init_data.xml
[2025-10-30 02:03:39] -rw-r--r-- 1 boinc boinc         0 Oct 30 00:50 boinc_lockfile
[2025-10-30 02:03:39] -rw-r--r-- 1 boinc boinc      2526 Oct 30 00:50 pandaJob.out
[2025-10-30 02:03:39] -rw------- 1 boinc boinc    987198 Oct 30 00:50 agis_schedconf.cvmfs.json
[2025-10-30 02:03:39] -rw------- 1 boinc boinc   1560632 Oct 30 00:50 agis_ddmendpoints.agis.ALL.json
[2025-10-30 02:03:39] drwx------ 5 boinc boinc      4096 Oct 30 00:50 pilot3
[2025-10-30 02:03:39] -rw------- 1 boinc boinc 178023514 Oct 30 02:02 HITS.47081490._021034.pool.root.1
[2025-10-30 02:03:39] -rw-r--r-- 1 boinc boinc       529 Oct 30 02:02 boinc_task_state.xml
[2025-10-30 02:03:39] -rw------- 1 boinc boinc      1030 Oct 30 02:02 memory_monitor_summary.json
[2025-10-30 02:03:39] -rw------- 1 boinc boinc        95 Oct 30 02:02 pilot_heartbeat.json
[2025-10-30 02:03:39] -rw------- 1 boinc boinc    250875 Oct 30 02:02 log.47081490._021034.job.log.tgz.1
[2025-10-30 02:03:39] -rw------- 1 boinc boinc      7761 Oct 30 02:02 heartbeat.json
[2025-10-30 02:03:39] -rw-r--r-- 1 boinc boinc      8192 Oct 30 02:03 boinc_mmap_file
[2025-10-30 02:03:39] -rw-r--r-- 1 boinc boinc        27 Oct 30 02:03 wrapper_checkpoint.txt
[2025-10-30 02:03:39] -rw------- 1 boinc boinc      4824 Oct 30 02:03 pilotlog.txt
[2025-10-30 02:03:39] -rw------- 1 boinc boinc    646091 Oct 30 02:03 log.47081490._021034.job.log.1
[2025-10-30 02:03:39] -rw------- 1 boinc boinc       357 Oct 30 02:03 output.list
[2025-10-30 02:03:39] -rw-r--r-- 1 boinc boinc       620 Oct 30 02:03 runtime_log
[2025-10-30 02:03:39] -rw------- 1 boinc boinc    911360 Oct 30 02:03 result.tar.gz
[2025-10-30 02:03:39] -rw-r--r-- 1 boinc boinc      8797 Oct 30 02:03 runtime_log.err
[2025-10-30 02:03:39] -rw------- 1 boinc boinc       662 Oct 30 02:03 MQBLDmFqMY8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmf2HODmA5wthm.diag
[2025-10-30 02:03:39] -rw-r--r-- 1 boinc boinc     12029 Oct 30 02:03 stderr.txt
[2025-10-30 02:03:39] HITS file was successfully produced:
[2025-10-30 02:03:39] -rw------- 1 boinc boinc 178023514 Oct 30 02:02 shared/HITS.pool.root.1
[2025-10-30 02:03:39]  *** Contents of shared directory: ***
[2025-10-30 02:03:39] total 384816
[2025-10-30 02:03:39] -rw-r--r-- 2 boinc boinc 214513192 Oct 30 00:50 ATLAS.root_0
[2025-10-30 02:03:39] -rw-r--r-- 2 boinc boinc    569679 Oct 30 00:50 input.tar.gz
[2025-10-30 02:03:39] -rw-r--r-- 2 boinc boinc     15120 Oct 30 00:50 start_atlas.sh
[2025-10-30 02:03:39] -rw------- 1 boinc boinc 178023514 Oct 30 02:02 HITS.pool.root.1
[2025-10-30 02:03:39] -rw------- 1 boinc boinc    911360 Oct 30 02:03 result.tar.gz
02:04:02 (4166313): run_atlas exited; CPU time 12355.373013
02:04:02 (4166313): called boinc_finish(0)

</stderr_txt>
]]>

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