Stderr output

<core_client_version>8.2.4</core_client_version>
<![CDATA[
<stderr_txt>
17:15:31 (2889129): wrapper (7.7.26015): starting
17:15:31 (2889129): wrapper: running run_atlas (--nthreads 12)
[2025-10-29 17:15:31] Arguments: --nthreads 12
[2025-10-29 17:15:31] Threads: 12
[2025-10-29 17:15:31] Checking for CVMFS
[2025-10-29 17:15:31] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-29 17:15:31] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-29 17:15:31] Running cvmfs_config stat atlas.cern.ch
[2025-10-29 17:15:31] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-29 17:15:31] 2.11.0.0 1808354 131 70036 152272 1 187 4987117 6144001 4796 130560 0 2476103 99.998 9682 229 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://128.142.248.156:3126 1
[2025-10-29 17:15:31] CVMFS is ok
[2025-10-29 17:15:31] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-29 17:15:31] Checking for apptainer binary...
[2025-10-29 17:15:31] apptainer is not installed, using version from CVMFS
[2025-10-29 17:15:31] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-29 17:15:32] radiat0r
[2025-10-29 17:15:32] apptainer works
[2025-10-29 17:15:32] Set ATHENA_PROC_NUMBER=12
[2025-10-29 17:15:32] Set ATHENA_CORE_NUMBER=12
[2025-10-29 17:15:32] Starting ATLAS job with PandaID=6864767916
[2025-10-29 17:15:32] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/16 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-29 17:50:54]  *** The last 200 lines of the pilot log: ***
[2025-10-29 17:50:54]  status=None
[2025-10-29 17:50:54]  status_code=0
[2025-10-29 17:50:54]  storage_token=
[2025-10-29 17:50:54]  surl=/var/lib/boinc/slots/16/PanDA_Pilot-6864767916/log.47081490._019233.job.log.tgz.1
[2025-10-29 17:50:54]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/f6/21/log.47081490._019233.job.log.tgz.1
[2025-10-29 17:50:54]  workdir=None
[2025-10-29 17:50:54] ]
[2025-10-29 17:50:54] 2025-10-29 17:49:48,344 | INFO     | transferring file log.47081490._019233.job.log.tgz.1 from /var/lib/boinc/slots/16/PanDA_Pilot-6864767916/log.47081490._019233.job.log.tgz.1 to /var/lib/boinc/slots
[2025-10-29 17:50:54] 2025-10-29 17:49:48,344 | INFO     | executing command: /usr/bin/env mv /var/lib/boinc/slots/16/PanDA_Pilot-6864767916/log.47081490._019233.job.log.tgz.1 /var/lib/boinc/slots/16/log.47081490._019233.j
[2025-10-29 17:50:54] 2025-10-29 17:49:48,367 | INFO     | adding to output.list: log.47081490._019233.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/f6/21/log.47081490._019233.job.log.tg
[2025-10-29 17:50:54] 2025-10-29 17:49:48,367 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-10-29 17:50:54] 2025-10-29 17:49:48,367 | INFO     | summary of transferred files:
[2025-10-29 17:50:54] 2025-10-29 17:49:48,367 | INFO     |  -- lfn=log.47081490._019233.job.log.tgz.1, status_code=0, status=transferred
[2025-10-29 17:50:54] 2025-10-29 17:49:48,367 | INFO     | stage-out finished correctly
[2025-10-29 17:50:54] 2025-10-29 17:49:48,422 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-10-29 17:50:54] 2025-10-29 17:49:48,695 | INFO     | time since job start (2042s) is within the limit (172800.0s)
[2025-10-29 17:50:54] 2025-10-29 17:49:49,276 | INFO     | monitor loop #150: job 0:6864767916 is in state 'finished'
[2025-10-29 17:50:54] 2025-10-29 17:49:49,276 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-29 17:50:54] 2025-10-29 17:49:50,701 | INFO     | time since job start (2044s) is within the limit (172800.0s)
[2025-10-29 17:50:54] 2025-10-29 17:49:51,496 | INFO     | job 6864767916 has state=finished
[2025-10-29 17:50:54] 2025-10-29 17:49:51,496 | INFO     | preparing for final server update for job 6864767916 in state='finished'
[2025-10-29 17:50:54] 2025-10-29 17:49:51,497 | INFO     | this job has now completed (state=finished)
[2025-10-29 17:50:54] 2025-10-29 17:49:51,498 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-10-29 17:50:54] 2025-10-29 17:49:51,498 | INFO     | log transfer has been attempted: DONE
[2025-10-29 17:50:54] 2025-10-29 17:49:51,498 | INFO     | job 6864767916 has finished - writing final server update
[2025-10-29 17:50:54] 2025-10-29 17:49:51,498 | INFO     | total number of processed events: 400 (read)
[2025-10-29 17:50:54] 2025-10-29 17:49:51,500 | INFO     | executing command: lscpu
[2025-10-29 17:50:54] 2025-10-29 17:49:51,636 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-10-29 17:50:54] 2025-10-29 17:49:51,779 | INFO     | monitor loop #151: job 0:6864767916 is in state 'finished'
[2025-10-29 17:50:54] 2025-10-29 17:49:51,780 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-29 17:50:54] 2025-10-29 17:49:52,707 | INFO     | time since job start (2046s) is within the limit (172800.0s)
[2025-10-29 17:50:54] 2025-10-29 17:49:54,277 | INFO     | PID=2893938 has CPU usage=14.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i 
[2025-10-29 17:50:54] 2025-10-29 17:49:54,277 | INFO     | .. there are 8 such processes running
[2025-10-29 17:50:54] 2025-10-29 17:49:54,283 | INFO     | monitor loop #152: job 0:6864767916 is in state 'finished'
[2025-10-29 17:50:54] 2025-10-29 17:49:54,283 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-29 17:50:54] 2025-10-29 17:49:55,277 | INFO     | time since job start (2049s) is within the limit (172800.0s)
[2025-10-29 17:50:54] 2025-10-29 17:49:56,088 | INFO     | CPU arch script returned: x86-64-v3
[2025-10-29 17:50:54] 2025-10-29 17:49:56,134 | INFO     | found 128 cores (64 cores per socket, 2 sockets) HT, CPU MHz: 2048.7288828125
[2025-10-29 17:50:54] 2025-10-29 17:49:56,204 | INFO     | using path: /var/lib/boinc/slots/16/PanDA_Pilot-6864767916/memory_monitor_summary.json (trf name=prmon)
[2025-10-29 17:50:54] 2025-10-29 17:49:56,205 | INFO     | extracted standard info from prmon json
[2025-10-29 17:50:54] 2025-10-29 17:49:56,205 | INFO     | extracted standard memory fields from prmon json
[2025-10-29 17:50:54] 2025-10-29 17:49:56,205 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-29 17:50:54] 2025-10-29 17:49:56,205 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-29 17:50:54] 2025-10-29 17:49:56,205 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-29 17:50:54] 2025-10-29 17:49:56,206 | INFO     | fitting pss+swap vs Time
[2025-10-29 17:50:54] 2025-10-29 17:49:56,206 | INFO     | sum of square deviations: 5441962.5
[2025-10-29 17:50:54] 2025-10-29 17:49:56,206 | INFO     | sum of deviations: 117872252.0
[2025-10-29 17:50:54] 2025-10-29 17:49:56,206 | INFO     | mean x: 1761759240.5
[2025-10-29 17:50:54] 2025-10-29 17:49:56,206 | INFO     | mean y: 2708087.4615384615
[2025-10-29 17:50:54] 2025-10-29 17:49:56,206 | INFO     | -- intersect: -38156784771.87819
[2025-10-29 17:50:54] 2025-10-29 17:49:56,206 | INFO     | intersect: -38156784771.87819
[2025-10-29 17:50:54] 2025-10-29 17:49:56,206 | INFO     | chi2: 0.00010891233367271874
[2025-10-29 17:50:54] 2025-10-29 17:49:56,206 | INFO     | -- intersect: -38156784771.87819
[2025-10-29 17:50:54] 2025-10-29 17:49:56,206 | INFO     | current memory leak: 21.66 B/s (using 26 data points, chi2=0.00)
[2025-10-29 17:50:54] 2025-10-29 17:49:56,206 | INFO     | could have reported an average CPU frequency of 2047 MHz (5 samples)
[2025-10-29 17:50:54] 2025-10-29 17:49:56,207 | INFO     | ..............................
[2025-10-29 17:50:54] 2025-10-29 17:49:56,207 | INFO     | . Timing measurements:
[2025-10-29 17:50:54] 2025-10-29 17:49:56,207 | INFO     | . get job = 0 s
[2025-10-29 17:50:54] 2025-10-29 17:49:56,207 | INFO     | . initial setup = 3 s
[2025-10-29 17:50:54] 2025-10-29 17:49:56,207 | INFO     | . payload setup = 6 s
[2025-10-29 17:50:54] 2025-10-29 17:49:56,207 | INFO     | . stage-in = 0 s
[2025-10-29 17:50:54] 2025-10-29 17:49:56,207 | INFO     | . payload execution = 2015 s
[2025-10-29 17:50:54] 2025-10-29 17:49:56,207 | INFO     | . stage-out = 0 s
[2025-10-29 17:50:54] 2025-10-29 17:49:56,207 | INFO     | . log creation = 0 s
[2025-10-29 17:50:54] 2025-10-29 17:49:56,207 | INFO     | ..............................
[2025-10-29 17:50:54] 2025-10-29 17:49:56,264 | INFO     | 
[2025-10-29 17:50:54] 2025-10-29 17:49:56,265 | INFO     | job summary report
[2025-10-29 17:50:54] 2025-10-29 17:49:56,265 | INFO     | --------------------------------------------------
[2025-10-29 17:50:54] 2025-10-29 17:49:56,265 | INFO     | PanDA job id: 6864767916
[2025-10-29 17:50:54] 2025-10-29 17:49:56,265 | INFO     | task id: 47081490
[2025-10-29 17:50:54] 2025-10-29 17:49:56,265 | INFO     | errors: (none)
[2025-10-29 17:50:54] 2025-10-29 17:49:56,265 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-29 17:50:54] 2025-10-29 17:49:56,265 | INFO     | pilot state: finished 
[2025-10-29 17:50:54] 2025-10-29 17:49:56,265 | INFO     | transexitcode: 0
[2025-10-29 17:50:54] 2025-10-29 17:49:56,265 | INFO     | exeerrorcode: 0
[2025-10-29 17:50:54] 2025-10-29 17:49:56,265 | INFO     | exeerrordiag: 
[2025-10-29 17:50:54] 2025-10-29 17:49:56,265 | INFO     | exitcode: 0
[2025-10-29 17:50:54] 2025-10-29 17:49:56,265 | INFO     | exitmsg: OK
[2025-10-29 17:50:54] 2025-10-29 17:49:56,265 | INFO     | cpuconsumptiontime: 21299 s
[2025-10-29 17:50:54] 2025-10-29 17:49:56,266 | INFO     | nevents: 400
[2025-10-29 17:50:54] 2025-10-29 17:49:56,266 | INFO     | neventsw: 0
[2025-10-29 17:50:54] 2025-10-29 17:49:56,266 | INFO     | pid: 2906085
[2025-10-29 17:50:54] 2025-10-29 17:49:56,266 | INFO     | pgrp: 2906085
[2025-10-29 17:50:54] 2025-10-29 17:49:56,266 | INFO     | corecount: 12
[2025-10-29 17:50:54] 2025-10-29 17:49:56,266 | INFO     | event service: False
[2025-10-29 17:50:54] 2025-10-29 17:49:56,266 | INFO     | sizes: {0: 2348887, 5: 2349149, 11: 2349205, 2025: 2374278, 2026: 2383334, 2034: 2383504}
[2025-10-29 17:50:54] 2025-10-29 17:49:56,266 | INFO     | --------------------------------------------------
[2025-10-29 17:50:54] 2025-10-29 17:49:56,266 | INFO     | 
[2025-10-29 17:50:54] 2025-10-29 17:49:56,266 | INFO     | executing command: ls -lF /var/lib/boinc/slots/16
[2025-10-29 17:50:54] 2025-10-29 17:49:56,287 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-29 17:50:54] 2025-10-29 17:49:56,290 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-29 17:50:54] 2025-10-29 17:49:56,290 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-29 17:50:54] 2025-10-29 17:49:56,290 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-29 17:50:54] 2025-10-29 17:49:56,290 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-29 17:50:54] 2025-10-29 17:49:56,290 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-29 17:50:54] 2025-10-29 17:49:56,290 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-29 17:50:54] 2025-10-29 17:49:56,291 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-29 17:50:54] 2025-10-29 17:49:56,291 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-29 17:50:54] 2025-10-29 17:49:56,291 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-29 17:50:54] 2025-10-29 17:49:56,291 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-29 17:50:54] 2025-10-29 17:49:56,291 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-29 17:50:54] 2025-10-29 17:49:56,291 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-29 17:50:54] 2025-10-29 17:49:56,291 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-29 17:50:54] 2025-10-29 17:49:56,291 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-29 17:50:54] 2025-10-29 17:49:56,291 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-29 17:50:54] 2025-10-29 17:49:56,291 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-29 17:50:54] 2025-10-29 17:49:56,292 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-29 17:50:54] 2025-10-29 17:49:56,292 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-29 17:50:54] 2025-10-29 17:49:56,292 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-29 17:50:54] 2025-10-29 17:49:56,292 | INFO     | job 6864767916 has completed (purged errors)
[2025-10-29 17:50:54] 2025-10-29 17:49:56,292 | INFO     | overall cleanup function is called
[2025-10-29 17:50:54] 2025-10-29 17:49:57,302 | INFO     | --- collectZombieJob: --- 10, [2906085]
[2025-10-29 17:50:54] 2025-10-29 17:49:57,303 | INFO     | zombie collector waiting for pid 2906085
[2025-10-29 17:50:54] 2025-10-29 17:49:57,303 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-29 17:50:54] 2025-10-29 17:49:57,303 | INFO     | collected zombie processes
[2025-10-29 17:50:54] 2025-10-29 17:49:57,303 | INFO     | will attempt to kill all subprocesses of pid=2906085
[2025-10-29 17:50:54] 2025-10-29 17:49:57,774 | INFO     | process IDs to be killed: [2906085] (in reverse order)
[2025-10-29 17:50:54] 2025-10-29 17:49:57,946 | WARNING  | found no corresponding commands to process id(s)
[2025-10-29 17:50:54] 2025-10-29 17:49:57,947 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-29 17:50:54] 2025-10-29 17:49:57,974 | INFO     | did not find any defunct processes belonging to 2906085
[2025-10-29 17:50:54] 2025-10-29 17:49:58,004 | INFO     | did not find any defunct processes belonging to 2906085
[2025-10-29 17:50:54] 2025-10-29 17:49:58,004 | INFO     | ready for new job
[2025-10-29 17:50:54] 2025-10-29 17:49:58,004 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-29 17:50:54] 2025-10-29 17:49:58,006 | INFO     | ***************************************
[2025-10-29 17:50:54] 2025-10-29 17:49:58,006 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-29 17:50:54] 2025-10-29 17:49:58,007 | INFO     | ***************************************
[2025-10-29 17:50:54] 2025-10-29 17:49:58,007 | INFO     | 
[2025-10-29 17:50:54] 2025-10-29 17:49:58,049 | INFO     | architecture information:
[2025-10-29 17:50:54] 2025-10-29 17:49:58,050 | INFO     | executing command: cat /etc/os-release
[2025-10-29 17:50:54] 2025-10-29 17:49:58,071 | INFO     | cat /etc/os-release:
[2025-10-29 17:50:54] NAME="CentOS Linux"
[2025-10-29 17:50:54] VERSION="7 (Core)"
[2025-10-29 17:50:54] ID="centos"
[2025-10-29 17:50:54] ID_LIKE="rhel fedora"
[2025-10-29 17:50:54] VERSION_ID="7"
[2025-10-29 17:50:54] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-29 17:50:54] ANSI_COLOR="0;31"
[2025-10-29 17:50:54] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-29 17:50:54] HOME_URL="https://www.centos.org/"
[2025-10-29 17:50:54] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-29 17:50:54] 
[2025-10-29 17:50:54] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-29 17:50:54] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-29 17:50:54] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-29 17:50:54] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-29 17:50:54] 
[2025-10-29 17:50:54] 2025-10-29 17:49:58,071 | INFO     | ***************************************
[2025-10-29 17:50:54] 2025-10-29 17:49:58,574 | INFO     | executing command: df -mP /var/lib/boinc/slots/16
[2025-10-29 17:50:54] 2025-10-29 17:49:58,599 | INFO     | sufficient remaining disk space (1702950338560 B)
[2025-10-29 17:50:54] 2025-10-29 17:49:58,600 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-29 17:50:54] 2025-10-29 17:49:58,600 | INFO     | current server update state: UPDATING_FINAL
[2025-10-29 17:50:54] 2025-10-29 17:49:58,600 | INFO     | update_server=False
[2025-10-29 17:50:54] 2025-10-29 17:49:58,600 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-29 17:50:54] 2025-10-29 17:49:58,600 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-29 17:50:54] 2025-10-29 17:49:58,601 | INFO     | aborting loop
[2025-10-29 17:50:54] 2025-10-29 17:49:58,905 | INFO     | all data control threads have been joined
[2025-10-29 17:50:54] 2025-10-29 17:49:58,934 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-29 17:50:54] 2025-10-29 17:49:59,034 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-29 17:50:54] 2025-10-29 17:49:59,407 | INFO     | all job control threads have been joined
[2025-10-29 17:50:54] 2025-10-29 17:49:59,606 | INFO     | [job] retrieve thread has finished
[2025-10-29 17:50:54] 2025-10-29 17:49:59,606 | INFO     | [job] job monitor thread has finished
[2025-10-29 17:50:54] 2025-10-29 17:49:59,785 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-29 17:50:54] 2025-10-29 17:49:59,911 | INFO     | [data] control thread has finished
[2025-10-29 17:50:54] 2025-10-29 17:49:59,982 | INFO     | [payload] validate_post thread has finished
[2025-10-29 17:50:54] 2025-10-29 17:50:00,023 | INFO     | all payload control threads have been joined
[2025-10-29 17:50:54] 2025-10-29 17:50:00,072 | INFO     | [job] validate thread has finished
[2025-10-29 17:50:54] 2025-10-29 17:50:00,292 | INFO     | [payload] failed_post thread has finished
[2025-10-29 17:50:54] 2025-10-29 17:50:00,305 | INFO     | [job] create_data_payload thread has finished
[2025-10-29 17:50:54] 2025-10-29 17:50:00,412 | INFO     | [job] control thread has finished
[2025-10-29 17:50:54] 2025-10-29 17:50:00,426 | INFO     | [payload] validate_pre thread has finished
[2025-10-29 17:50:54] 2025-10-29 17:50:00,710 | INFO     | [payload] execute_payloads thread has finished
[2025-10-29 17:50:54] 2025-10-29 17:50:00,940 | INFO     | [data] copytool_out thread has finished
[2025-10-29 17:50:54] 2025-10-29 17:50:00,953 | INFO     | [data] copytool_in thread has finished
[2025-10-29 17:50:54] 2025-10-29 17:50:01,026 | INFO     | [payload] control thread has finished
[2025-10-29 17:50:54] 2025-10-29 17:50:01,275 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-29 17:50:54] 2025-10-29 17:50:02,281 | INFO     | [job] queue monitor thread has finished
[2025-10-29 17:50:54] 2025-10-29 17:50:03,040 | INFO     | [data] queue_monitor thread has finished
[2025-10-29 17:50:54] 2025-10-29 17:50:28,927 | INFO     | PID=2893938 has CPU usage=3.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-29 17:50:54] 2025-10-29 17:50:28,927 | INFO     | .. there are 8 such processes running
[2025-10-29 17:50:54] 2025-10-29 17:50:28,927 | INFO     | found 0 job(s) in 20 queues
[2025-10-29 17:50:54] 2025-10-29 17:50:28,927 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-29 17:50:54] 2025-10-29 17:50:28,927 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-29 17:50:54] 2025-10-29 17:50:49,014 | INFO     | [monitor] cgroup control has ended
[2025-10-29 17:50:54] 2025-10-29 17:50:49,399 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140627971417920)>', '<ExcThread(monitor, started 140627538855680)>']
[2025-10-29 17:50:54] 2025-10-29 17:50:50,020 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-29 17:50:54] 2025-10-29 17:50:50,020 | INFO     | [monitor] control thread has ended
[2025-10-29 17:50:54] 2025-10-29 17:50:54,424 | INFO     | all workflow threads have been joined
[2025-10-29 17:50:54] 2025-10-29 17:50:54,424 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-29 17:50:54] 2025-10-29 17:50:54,425 | INFO     | traces error code: 0
[2025-10-29 17:50:54] 2025-10-29 17:50:54,425 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-29 17:50:54] 2025-10-29 17:50:54,538 [wrapper] ==== pilot stdout END ====
[2025-10-29 17:50:54] 2025-10-29 17:50:54,540 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-29 17:50:54] 2025-10-29 17:50:54,542 [wrapper] pilotpid: 2893938
[2025-10-29 17:50:54] 2025-10-29 17:50:54,544 [wrapper] Pilot exit status: 0
[2025-10-29 17:50:54] 2025-10-29 17:50:54,553 [wrapper] pandaids: 6864767916
[2025-10-29 17:50:54] 2025-10-29 17:50:54,663 [wrapper] cleanup supervisor_pilot 3062480 2893939
[2025-10-29 17:50:54] 2025-10-29 17:50:54,666 [wrapper] Test setup, not cleaning
[2025-10-29 17:50:54] 2025-10-29 17:50:54,668 [wrapper] apfmon messages muted
[2025-10-29 17:50:54] 2025-10-29 17:50:54,671 [wrapper] ==== wrapper stdout END ====
[2025-10-29 17:50:54] 2025-10-29 17:50:54,673 [wrapper] ==== wrapper stderr END ====
[2025-10-29 17:50:54]  *** Error codes and diagnostics ***
[2025-10-29 17:50:54]     "exeErrorCode": 0,
[2025-10-29 17:50:54]     "exeErrorDiag": "",
[2025-10-29 17:50:54]     "pilotErrorCode": 0,
[2025-10-29 17:50:54]     "pilotErrorDiag": "",
[2025-10-29 17:50:54]  *** Listing of results directory ***
[2025-10-29 17:50:54] total 387856
[2025-10-29 17:50:54] -rw-r--r-- 1 boinc boinc      5112 Oct 29 14:03 queuedata.json
[2025-10-29 17:50:54] -rw-r--r-- 1 boinc boinc    557409 Oct 29 14:03 pilot3.tar.gz
[2025-10-29 17:50:54] -rwx------ 1 boinc boinc     36292 Oct 29 14:03 runpilot2-wrapper.sh
[2025-10-29 17:50:54] -rw-r--r-- 1 boinc boinc       100 Oct 29 17:15 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-29 17:50:54] -rwxr-xr-x 1 boinc boinc      7986 Oct 29 17:15 run_atlas
[2025-10-29 17:50:54] -rw-r--r-- 1 boinc boinc       105 Oct 29 17:15 job.xml
[2025-10-29 17:50:54] -rw-r--r-- 2 boinc boinc     15120 Oct 29 17:15 start_atlas.sh
[2025-10-29 17:50:54] drwxrwx--x 2 boinc boinc      4096 Oct 29 17:15 shared
[2025-10-29 17:50:54] -rw-r--r-- 2 boinc boinc    569675 Oct 29 17:15 input.tar.gz
[2025-10-29 17:50:54] -rw-r--r-- 1 boinc boinc      9398 Oct 29 17:15 init_data.xml
[2025-10-29 17:50:54] -rw-r--r-- 2 boinc boinc 213553217 Oct 29 17:15 EVNT.47081487._000770.pool.root.1
[2025-10-29 17:50:54] -rw-r--r-- 1 boinc boinc         0 Oct 29 17:15 boinc_setup_complete
[2025-10-29 17:50:54] -rw-r--r-- 1 boinc boinc         0 Oct 29 17:15 boinc_lockfile
[2025-10-29 17:50:54] -rw-r--r-- 1 boinc boinc      2526 Oct 29 17:15 pandaJob.out
[2025-10-29 17:50:54] -rw------- 1 boinc boinc    986512 Oct 29 17:15 agis_schedconf.cvmfs.json
[2025-10-29 17:50:54] -rw------- 1 boinc boinc   1560632 Oct 29 17:15 agis_ddmendpoints.agis.ALL.json
[2025-10-29 17:50:54] drwx------ 5 boinc boinc      4096 Oct 29 17:15 pilot3
[2025-10-29 17:50:54] -rw------- 1 boinc boinc 178358810 Oct 29 17:49 HITS.47081490._019233.pool.root.1
[2025-10-29 17:50:54] -rw-r--r-- 1 boinc boinc       529 Oct 29 17:49 boinc_task_state.xml
[2025-10-29 17:50:54] -rw------- 1 boinc boinc      1030 Oct 29 17:49 memory_monitor_summary.json
[2025-10-29 17:50:54] -rw------- 1 boinc boinc    338552 Oct 29 17:49 log.47081490._019233.job.log.tgz.1
[2025-10-29 17:50:54] -rw------- 1 boinc boinc      7744 Oct 29 17:49 heartbeat.json
[2025-10-29 17:50:54] -rw------- 1 boinc boinc        95 Oct 29 17:50 pilot_heartbeat.json
[2025-10-29 17:50:54] -rw-r--r-- 1 boinc boinc      8192 Oct 29 17:50 boinc_mmap_file
[2025-10-29 17:50:54] -rw-r--r-- 1 boinc boinc        27 Oct 29 17:50 wrapper_checkpoint.txt
[2025-10-29 17:50:54] -rw------- 1 boinc boinc      4826 Oct 29 17:50 pilotlog.txt
[2025-10-29 17:50:54] -rw------- 1 boinc boinc    327667 Oct 29 17:50 log.47081490._019233.job.log.1
[2025-10-29 17:50:54] -rw------- 1 boinc boinc       357 Oct 29 17:50 output.list
[2025-10-29 17:50:54] -rw-r--r-- 1 boinc boinc       620 Oct 29 17:50 runtime_log
[2025-10-29 17:50:54] -rw------- 1 boinc boinc    686080 Oct 29 17:50 result.tar.gz
[2025-10-29 17:50:54] -rw-r--r-- 1 boinc boinc      8672 Oct 29 17:50 runtime_log.err
[2025-10-29 17:50:54] -rw------- 1 boinc boinc       641 Oct 29 17:50 IXoLDmRxLY8n9Rq4apOajLDm4fhM0noT9bVof3QYDmqSpMDmUV1Acn.diag
[2025-10-29 17:50:54] -rw-r--r-- 1 boinc boinc     21780 Oct 29 17:50 stderr.txt
[2025-10-29 17:50:54] HITS file was successfully produced:
[2025-10-29 17:50:54] -rw------- 1 boinc boinc 178358810 Oct 29 17:49 shared/HITS.pool.root.1
[2025-10-29 17:50:54]  *** Contents of shared directory: ***
[2025-10-29 17:50:54] total 383988
[2025-10-29 17:50:54] -rw-r--r-- 2 boinc boinc     15120 Oct 29 17:15 start_atlas.sh
[2025-10-29 17:50:54] -rw-r--r-- 2 boinc boinc    569675 Oct 29 17:15 input.tar.gz
[2025-10-29 17:50:54] -rw-r--r-- 2 boinc boinc 213553217 Oct 29 17:15 ATLAS.root_0
[2025-10-29 17:50:54] -rw------- 1 boinc boinc 178358810 Oct 29 17:49 HITS.pool.root.1
[2025-10-29 17:50:54] -rw------- 1 boinc boinc    686080 Oct 29 17:50 result.tar.gz
17:50:56 (2889129): run_atlas exited; CPU time 21363.476987
17:50:56 (2889129): called boinc_finish(0)

</stderr_txt>
]]>

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