Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
19:51:43 (365567): wrapper (7.7.26015): starting
19:51:43 (365567): wrapper: running run_atlas (--nthreads 3)
[2025-10-29 19:51:43] Arguments: --nthreads 3
[2025-10-29 19:51:43] Threads: 3
[2025-10-29 19:51:43] Checking for CVMFS
[2025-10-29 19:51:43] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-29 19:51:43] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-29 19:51:43] Running cvmfs_config stat atlas.cern.ch
[2025-10-29 19:51:43] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-29 19:51:43] 2.9.2.0 173524 538 69948 152273 3 57 35026728 36864000 0 130560 0 458912 99.986 21766 2032 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-10-29 19:51:43] CVMFS is ok
[2025-10-29 19:51:43] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-29 19:51:43] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-29 19:51:43] Further information can be found at the LHC@home message board.
[2025-10-29 19:51:43] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-29 19:51:43] Checking for apptainer binary...
[2025-10-29 19:51:43] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-29 19:51:43] Running /usr/bin/apptainer --version
[2025-10-29 19:51:43] apptainer version 1.4.1-1.1
[2025-10-29 19:51:43] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-29 19:51:43] legendA163
[2025-10-29 19:51:43] apptainer works
[2025-10-29 19:51:43] Set ATHENA_PROC_NUMBER=3
[2025-10-29 19:51:43] Set ATHENA_CORE_NUMBER=3
[2025-10-29 19:51:43] Starting ATLAS job with PandaID=6864766055
[2025-10-29 19:51:43] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-29 21:09:06]  *** The last 200 lines of the pilot log: ***
[2025-10-29 21:09:06]  protocol_id=None
[2025-10-29 21:09:06]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-10-29 21:09:06]  replicas=None
[2025-10-29 21:09:06]  scope=mc23_13p6TeV
[2025-10-29 21:09:06]  status=None
[2025-10-29 21:09:06]  status_code=0
[2025-10-29 21:09:06]  storage_token=
[2025-10-29 21:09:06]  surl=/local/data/boinc/slots/0/PanDA_Pilot-6864766055/log.47081490._017753.job.log.tgz.1
[2025-10-29 21:09:06]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/cb/9f/log.47081490._017753.job.log.tgz.1
[2025-10-29 21:09:06]  workdir=None
[2025-10-29 21:09:06] ]
[2025-10-29 21:09:06] 2025-10-29 20:08:26,258 | INFO     | transferring file log.47081490._017753.job.log.tgz.1 from /local/data/boinc/slots/0/PanDA_Pilot-6864766055/log.47081490._017753.job.log.tgz.1 to /local/data/boinc/
[2025-10-29 21:09:06] 2025-10-29 20:08:26,258 | INFO     | executing command: /usr/bin/env mv /local/data/boinc/slots/0/PanDA_Pilot-6864766055/log.47081490._017753.job.log.tgz.1 /local/data/boinc/slots/0/log.47081490._0177
[2025-10-29 21:09:06] 2025-10-29 20:08:26,272 | INFO     | adding to output.list: log.47081490._017753.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/cb/9f/log.47081490._017753.job.log.tg
[2025-10-29 21:09:06] 2025-10-29 20:08:26,272 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-10-29 21:09:06] 2025-10-29 20:08:26,272 | INFO     | summary of transferred files:
[2025-10-29 21:09:06] 2025-10-29 20:08:26,272 | INFO     |  -- lfn=log.47081490._017753.job.log.tgz.1, status_code=0, status=transferred
[2025-10-29 21:09:06] 2025-10-29 20:08:26,272 | INFO     | stage-out finished correctly
[2025-10-29 21:09:06] 2025-10-29 20:08:27,021 | INFO     | time since job start (4598s) is within the limit (172800.0s)
[2025-10-29 21:09:06] 2025-10-29 20:08:28,590 | INFO     | monitor loop #355: job 0:6864766055 is in state 'finished'
[2025-10-29 21:09:06] 2025-10-29 20:08:28,591 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-29 21:09:06] 2025-10-29 20:08:29,028 | INFO     | time since job start (4600s) is within the limit (172800.0s)
[2025-10-29 21:09:06] 2025-10-29 20:08:29,274 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-10-29 21:09:06] 2025-10-29 20:08:29,923 | INFO     | job 6864766055 has state=finished
[2025-10-29 21:09:06] 2025-10-29 20:08:29,923 | INFO     | preparing for final server update for job 6864766055 in state='finished'
[2025-10-29 21:09:06] 2025-10-29 20:08:29,924 | INFO     | this job has now completed (state=finished)
[2025-10-29 21:09:06] 2025-10-29 20:08:29,924 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-10-29 21:09:06] 2025-10-29 20:08:29,924 | INFO     | log transfer has been attempted: DONE
[2025-10-29 21:09:06] 2025-10-29 20:08:29,924 | INFO     | job 6864766055 has finished - writing final server update
[2025-10-29 21:09:06] 2025-10-29 20:08:29,924 | INFO     | total number of processed events: 400 (read)
[2025-10-29 21:09:06] 2025-10-29 20:08:29,925 | INFO     | executing command: lscpu
[2025-10-29 21:09:06] 2025-10-29 20:08:29,942 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-10-29 21:09:06] 2025-10-29 20:08:31,034 | INFO     | time since job start (4602s) is within the limit (172800.0s)
[2025-10-29 21:09:06] 2025-10-29 20:08:31,094 | INFO     | monitor loop #356: job 0:6864766055 is in state 'finished'
[2025-10-29 21:09:06] 2025-10-29 20:08:31,095 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-29 21:09:06] 2025-10-29 20:08:32,111 | INFO     | PID=369288 has CPU usage=2.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-10-29 21:09:06] 2025-10-29 20:08:33,111 | INFO     | time since job start (4604s) is within the limit (172800.0s)
[2025-10-29 21:09:06] 2025-10-29 20:08:33,362 | INFO     | CPU arch script returned: x86-64-v3
[2025-10-29 21:09:06] 2025-10-29 20:08:33,363 | INFO     | found 6 cores (6 cores per socket, 1 socket) HT, CPU MHz: 3493.8832500000003
[2025-10-29 21:09:06] 2025-10-29 20:08:33,364 | INFO     | using path: /local/data/boinc/slots/0/PanDA_Pilot-6864766055/memory_monitor_summary.json (trf name=prmon)
[2025-10-29 21:09:06] 2025-10-29 20:08:33,365 | INFO     | extracted standard info from prmon json
[2025-10-29 21:09:06] 2025-10-29 20:08:33,365 | INFO     | extracted standard memory fields from prmon json
[2025-10-29 21:09:06] 2025-10-29 20:08:33,365 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-29 21:09:06] 2025-10-29 20:08:33,365 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-29 21:09:06] 2025-10-29 20:08:33,365 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-29 21:09:06] 2025-10-29 20:08:33,366 | INFO     | fitting pss+swap vs Time
[2025-10-29 21:09:06] 2025-10-29 20:08:33,366 | INFO     | sum of square deviations: 97479037.0
[2025-10-29 21:09:06] 2025-10-29 20:08:33,366 | INFO     | sum of deviations: -4156021835.5
[2025-10-29 21:09:06] 2025-10-29 20:08:33,366 | INFO     | mean x: 1761766278.5
[2025-10-29 21:09:06] 2025-10-29 20:08:33,366 | INFO     | mean y: 2390277.338235294
[2025-10-29 21:09:06] 2025-10-29 20:08:33,366 | INFO     | -- intersect: 75115351461.94221
[2025-10-29 21:09:06] 2025-10-29 20:08:33,366 | INFO     | intersect: 75115351461.94221
[2025-10-29 21:09:06] 2025-10-29 20:08:33,366 | INFO     | chi2: 0.12133361318409454
[2025-10-29 21:09:06] 2025-10-29 20:08:33,366 | INFO     | -- intersect: 75115351461.94221
[2025-10-29 21:09:06] 2025-10-29 20:08:33,366 | INFO     | current memory leak: -42.64 B/s (using 68 data points, chi2=0.12)
[2025-10-29 21:09:06] 2025-10-29 20:08:33,366 | INFO     | could have reported an average CPU frequency of 3784 MHz (6 samples)
[2025-10-29 21:09:06] 2025-10-29 20:08:33,366 | INFO     | ..............................
[2025-10-29 21:09:06] 2025-10-29 20:08:33,366 | INFO     | . Timing measurements:
[2025-10-29 21:09:06] 2025-10-29 20:08:33,366 | INFO     | . get job = 0 s
[2025-10-29 21:09:06] 2025-10-29 20:08:33,366 | INFO     | . initial setup = 1 s
[2025-10-29 21:09:06] 2025-10-29 20:08:33,366 | INFO     | . payload setup = 3 s
[2025-10-29 21:09:06] 2025-10-29 20:08:33,366 | INFO     | . stage-in = 0 s
[2025-10-29 21:09:06] 2025-10-29 20:08:33,366 | INFO     | . payload execution = 4576 s
[2025-10-29 21:09:06] 2025-10-29 20:08:33,367 | INFO     | . stage-out = 0 s
[2025-10-29 21:09:06] 2025-10-29 20:08:33,367 | INFO     | . log creation = 0 s
[2025-10-29 21:09:06] 2025-10-29 20:08:33,367 | INFO     | ..............................
[2025-10-29 21:09:06] 2025-10-29 20:08:33,841 | INFO     | 
[2025-10-29 21:09:06] 2025-10-29 20:08:33,842 | INFO     | job summary report
[2025-10-29 21:09:06] 2025-10-29 20:08:33,842 | INFO     | --------------------------------------------------
[2025-10-29 21:09:06] 2025-10-29 20:08:33,842 | INFO     | PanDA job id: 6864766055
[2025-10-29 21:09:06] 2025-10-29 20:08:33,842 | INFO     | task id: 47081490
[2025-10-29 21:09:06] 2025-10-29 20:08:33,842 | INFO     | errors: (none)
[2025-10-29 21:09:06] 2025-10-29 20:08:33,842 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-29 21:09:06] 2025-10-29 20:08:33,842 | INFO     | pilot state: finished 
[2025-10-29 21:09:06] 2025-10-29 20:08:33,842 | INFO     | transexitcode: 0
[2025-10-29 21:09:06] 2025-10-29 20:08:33,842 | INFO     | exeerrorcode: 0
[2025-10-29 21:09:06] 2025-10-29 20:08:33,842 | INFO     | exeerrordiag: 
[2025-10-29 21:09:06] 2025-10-29 20:08:33,842 | INFO     | exitcode: 0
[2025-10-29 21:09:06] 2025-10-29 20:08:33,842 | INFO     | exitmsg: OK
[2025-10-29 21:09:06] 2025-10-29 20:08:33,842 | INFO     | cpuconsumptiontime: 13090 s
[2025-10-29 21:09:06] 2025-10-29 20:08:33,842 | INFO     | nevents: 400
[2025-10-29 21:09:06] 2025-10-29 20:08:33,842 | INFO     | neventsw: 0
[2025-10-29 21:09:06] 2025-10-29 20:08:33,842 | INFO     | pid: 375727
[2025-10-29 21:09:06] 2025-10-29 20:08:33,842 | INFO     | pgrp: 375727
[2025-10-29 21:09:06] 2025-10-29 20:08:33,842 | INFO     | corecount: 3
[2025-10-29 21:09:06] 2025-10-29 20:08:33,842 | INFO     | event service: False
[2025-10-29 21:09:06] 2025-10-29 20:08:33,842 | INFO     | sizes: {0: 2348660, 1: 2348915, 3: 2349177, 11: 2349205, 4582: 2375522, 4583: 2384709, 4586: 2384709, 4590: 2384903}
[2025-10-29 21:09:06] 2025-10-29 20:08:33,843 | INFO     | --------------------------------------------------
[2025-10-29 21:09:06] 2025-10-29 20:08:33,843 | INFO     | 
[2025-10-29 21:09:06] 2025-10-29 20:08:33,843 | INFO     | executing command: ls -lF /local/data/boinc/slots/0
[2025-10-29 21:09:06] 2025-10-29 20:08:33,858 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-29 21:09:06] 2025-10-29 20:08:33,858 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-29 21:09:06] 2025-10-29 20:08:33,858 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-29 21:09:06] 2025-10-29 20:08:33,858 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-29 21:09:06] 2025-10-29 20:08:33,858 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-29 21:09:06] 2025-10-29 20:08:33,858 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-29 21:09:06] 2025-10-29 20:08:33,858 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-29 21:09:06] 2025-10-29 20:08:33,859 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-29 21:09:06] 2025-10-29 20:08:33,859 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-29 21:09:06] 2025-10-29 20:08:33,859 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-29 21:09:06] 2025-10-29 20:08:33,859 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-29 21:09:06] 2025-10-29 20:08:33,859 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-29 21:09:06] 2025-10-29 20:08:33,859 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-29 21:09:06] 2025-10-29 20:08:33,859 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-29 21:09:06] 2025-10-29 20:08:33,859 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-29 21:09:06] 2025-10-29 20:08:33,859 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-29 21:09:06] 2025-10-29 20:08:33,859 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-29 21:09:06] 2025-10-29 20:08:33,859 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-29 21:09:06] 2025-10-29 20:08:33,859 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-29 21:09:06] 2025-10-29 20:08:33,859 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-29 21:09:06] 2025-10-29 20:08:33,859 | INFO     | job 6864766055 has completed (purged errors)
[2025-10-29 21:09:06] 2025-10-29 20:08:33,859 | INFO     | overall cleanup function is called
[2025-10-29 21:09:06] 2025-10-29 20:08:34,866 | INFO     | --- collectZombieJob: --- 10, [375727]
[2025-10-29 21:09:06] 2025-10-29 20:08:34,866 | INFO     | zombie collector waiting for pid 375727
[2025-10-29 21:09:06] 2025-10-29 20:08:34,866 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-29 21:09:06] 2025-10-29 20:08:34,866 | INFO     | collected zombie processes
[2025-10-29 21:09:06] 2025-10-29 20:08:34,866 | INFO     | will attempt to kill all subprocesses of pid=375727
[2025-10-29 21:09:06] 2025-10-29 20:08:34,922 | INFO     | process IDs to be killed: [375727] (in reverse order)
[2025-10-29 21:09:06] 2025-10-29 20:08:34,951 | WARNING  | found no corresponding commands to process id(s)
[2025-10-29 21:09:06] 2025-10-29 20:08:34,951 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-29 21:09:06] 2025-10-29 20:08:34,953 | INFO     | did not find any defunct processes belonging to 375727
[2025-10-29 21:09:06] 2025-10-29 20:08:34,954 | INFO     | did not find any defunct processes belonging to 375727
[2025-10-29 21:09:06] 2025-10-29 20:08:34,954 | INFO     | ready for new job
[2025-10-29 21:09:06] 2025-10-29 20:08:34,954 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-29 21:09:06] 2025-10-29 20:08:34,955 | INFO     | ***************************************
[2025-10-29 21:09:06] 2025-10-29 20:08:34,955 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-29 21:09:06] 2025-10-29 20:08:34,955 | INFO     | ***************************************
[2025-10-29 21:09:06] 2025-10-29 20:08:34,955 | INFO     | 
[2025-10-29 21:09:06] 2025-10-29 20:08:34,955 | INFO     | architecture information:
[2025-10-29 21:09:06] 2025-10-29 20:08:34,955 | INFO     | executing command: cat /etc/os-release
[2025-10-29 21:09:06] 2025-10-29 20:08:34,964 | INFO     | cat /etc/os-release:
[2025-10-29 21:09:06] NAME="CentOS Linux"
[2025-10-29 21:09:06] VERSION="7 (Core)"
[2025-10-29 21:09:06] ID="centos"
[2025-10-29 21:09:06] ID_LIKE="rhel fedora"
[2025-10-29 21:09:06] VERSION_ID="7"
[2025-10-29 21:09:06] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-29 21:09:06] ANSI_COLOR="0;31"
[2025-10-29 21:09:06] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-29 21:09:06] HOME_URL="https://www.centos.org/"
[2025-10-29 21:09:06] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-29 21:09:06] 
[2025-10-29 21:09:06] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-29 21:09:06] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-29 21:09:06] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-29 21:09:06] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-29 21:09:06] 
[2025-10-29 21:09:06] 2025-10-29 20:08:34,964 | INFO     | ***************************************
[2025-10-29 21:09:06] 2025-10-29 20:08:35,468 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-10-29 21:09:06] 2025-10-29 20:08:35,480 | INFO     | sufficient remaining disk space (370000527360 B)
[2025-10-29 21:09:06] 2025-10-29 20:08:35,480 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-29 21:09:06] 2025-10-29 20:08:35,480 | INFO     | current server update state: UPDATING_FINAL
[2025-10-29 21:09:06] 2025-10-29 20:08:35,480 | INFO     | update_server=False
[2025-10-29 21:09:06] 2025-10-29 20:08:35,480 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-29 21:09:06] 2025-10-29 20:08:35,480 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-29 21:09:06] 2025-10-29 20:08:35,481 | INFO     | aborting loop
[2025-10-29 21:09:06] 2025-10-29 20:08:35,481 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-29 21:09:06] 2025-10-29 20:08:35,572 | INFO     | all payload control threads have been joined
[2025-10-29 21:09:06] 2025-10-29 20:08:36,099 | INFO     | all data control threads have been joined
[2025-10-29 21:09:06] 2025-10-29 20:08:36,313 | INFO     | all job control threads have been joined
[2025-10-29 21:09:06] 2025-10-29 20:08:36,486 | INFO     | [job] job monitor thread has finished
[2025-10-29 21:09:06] 2025-10-29 20:08:36,487 | INFO     | [job] retrieve thread has finished
[2025-10-29 21:09:06] 2025-10-29 20:08:36,514 | INFO     | [payload] validate_pre thread has finished
[2025-10-29 21:09:06] 2025-10-29 20:08:36,577 | INFO     | [payload] control thread has finished
[2025-10-29 21:09:06] 2025-10-29 20:08:36,628 | INFO     | [payload] validate_post thread has finished
[2025-10-29 21:09:06] 2025-10-29 20:08:36,819 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-29 21:09:06] 2025-10-29 20:08:37,104 | INFO     | [data] control thread has finished
[2025-10-29 21:09:06] 2025-10-29 20:08:37,125 | INFO     | [payload] execute_payloads thread has finished
[2025-10-29 21:09:06] 2025-10-29 20:08:37,319 | INFO     | [job] control thread has finished
[2025-10-29 21:09:06] 2025-10-29 20:08:37,554 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-29 21:09:06] 2025-10-29 20:08:37,655 | INFO     | [data] copytool_in thread has finished
[2025-10-29 21:09:06] 2025-10-29 20:08:37,712 | INFO     | [payload] failed_post thread has finished
[2025-10-29 21:09:06] 2025-10-29 20:08:37,854 | INFO     | [job] validate thread has finished
[2025-10-29 21:09:06] 2025-10-29 20:08:37,971 | INFO     | [job] create_data_payload thread has finished
[2025-10-29 21:09:06] 2025-10-29 20:08:38,405 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-29 21:09:06] 2025-10-29 20:08:38,825 | INFO     | [data] copytool_out thread has finished
[2025-10-29 21:09:06] 2025-10-29 20:08:39,410 | INFO     | [job] queue monitor thread has finished
[2025-10-29 21:09:06] 2025-10-29 20:08:39,488 | INFO     | [data] queue_monitor thread has finished
[2025-10-29 21:09:06] 2025-10-29 20:08:54,341 | INFO     | [monitor] cgroup control has ended
[2025-10-29 21:09:06] 2025-10-29 20:08:55,074 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139847786772288)>', '<ExcThread(monitor, started 139847505250048)>']
[2025-10-29 21:09:06] 2025-10-29 20:09:00,074 | INFO     | all workflow threads have been joined
[2025-10-29 21:09:06] 2025-10-29 20:09:00,075 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-29 21:09:06] 2025-10-29 20:09:00,075 | INFO     | traces error code: 0
[2025-10-29 21:09:06] 2025-10-29 20:09:00,075 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-29 21:09:06] 2025-10-29 20:09:06,255 | INFO     | PID=369288 has CPU usage=0.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-10-29 21:09:06] 2025-10-29 20:09:06,256 | INFO     | found 0 job(s) in 20 queues
[2025-10-29 21:09:06] 2025-10-29 20:09:06,256 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-29 21:09:06] 2025-10-29 20:09:06,256 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-29 21:09:06] 2025-10-29 20:09:06,256 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-29 21:09:06] 2025-10-29 20:09:06,256 | INFO     | [monitor] control thread has ended
[2025-10-29 21:09:06] 2025-10-29 20:09:06,304 [wrapper] ==== pilot stdout END ====
[2025-10-29 21:09:06] 2025-10-29 20:09:06,307 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-29 21:09:06] 2025-10-29 20:09:06,309 [wrapper] pilotpid: 369288
[2025-10-29 21:09:06] 2025-10-29 20:09:06,311 [wrapper] Pilot exit status: 0
[2025-10-29 21:09:06] 2025-10-29 20:09:06,319 [wrapper] pandaids: 6864766055
[2025-10-29 21:09:06] 2025-10-29 20:09:06,339 [wrapper] cleanup supervisor_pilot  388371 369289
[2025-10-29 21:09:06] 2025-10-29 20:09:06,342 [wrapper] Test setup, not cleaning
[2025-10-29 21:09:06] 2025-10-29 20:09:06,344 [wrapper] apfmon messages muted
[2025-10-29 21:09:06] 2025-10-29 20:09:06,347 [wrapper] ==== wrapper stdout END ====
[2025-10-29 21:09:06] 2025-10-29 20:09:06,349 [wrapper] ==== wrapper stderr END ====
[2025-10-29 21:09:06]  *** Error codes and diagnostics ***
[2025-10-29 21:09:06]     "exeErrorCode": 0,
[2025-10-29 21:09:06]     "exeErrorDiag": "",
[2025-10-29 21:09:06]     "pilotErrorCode": 0,
[2025-10-29 21:09:06]     "pilotErrorDiag": "",
[2025-10-29 21:09:06]  *** Listing of results directory ***
[2025-10-29 21:09:06] total 395260
[2025-10-29 21:09:06] -rw-r--r-- 1 boinc boinc    557409 Oct 29 14:14 pilot3.tar.gz
[2025-10-29 21:09:06] -rw-r--r-- 1 boinc boinc      5112 Oct 29 14:24 queuedata.json
[2025-10-29 21:09:06] -rwx------ 1 boinc boinc     36292 Oct 29 14:25 runpilot2-wrapper.sh
[2025-10-29 21:09:06] -rw-r--r-- 1 boinc boinc       100 Oct 29 19:51 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-29 21:09:06] -rwxr-xr-x 1 boinc boinc      7986 Oct 29 19:51 run_atlas
[2025-10-29 21:09:06] -rw-r--r-- 1 boinc boinc       105 Oct 29 19:51 job.xml
[2025-10-29 21:09:06] -rw-r--r-- 2 boinc boinc 215732005 Oct 29 19:51 EVNT.47081487._000710.pool.root.1
[2025-10-29 21:09:06] -rw-r--r-- 2 boinc boinc    569676 Oct 29 19:51 input.tar.gz
[2025-10-29 21:09:06] -rw-r--r-- 2 boinc boinc     15120 Oct 29 19:51 start_atlas.sh
[2025-10-29 21:09:06] drwxrwx--x 2 boinc boinc      4096 Oct 29 19:51 shared
[2025-10-29 21:09:06] -rw-r--r-- 1 boinc boinc         0 Oct 29 19:51 boinc_setup_complete
[2025-10-29 21:09:06] -rw-r--r-- 1 boinc boinc      6448 Oct 29 19:51 init_data.xml
[2025-10-29 21:09:06] -rw-r--r-- 1 boinc boinc         0 Oct 29 19:51 boinc_lockfile
[2025-10-29 21:09:06] -rw-r--r-- 1 boinc boinc      2525 Oct 29 19:51 pandaJob.out
[2025-10-29 21:09:06] -rw------- 1 boinc boinc    986514 Oct 29 19:51 agis_schedconf.cvmfs.json
[2025-10-29 21:09:06] -rw------- 1 boinc boinc   1560632 Oct 29 19:51 agis_ddmendpoints.agis.ALL.json
[2025-10-29 21:09:06] drwx------ 5 boinc boinc      4096 Oct 29 19:51 pilot3
[2025-10-29 21:09:06] -rw------- 1 boinc boinc 183278483 Oct 29 21:08 HITS.47081490._017753.pool.root.1
[2025-10-29 21:09:06] -rw------- 1 boinc boinc        95 Oct 29 21:08 pilot_heartbeat.json
[2025-10-29 21:09:06] -rw-r--r-- 1 boinc boinc       529 Oct 29 21:08 boinc_task_state.xml
[2025-10-29 21:09:06] -rw------- 1 boinc boinc      1016 Oct 29 21:08 memory_monitor_summary.json
[2025-10-29 21:09:06] -rw------- 1 boinc boinc    233656 Oct 29 21:08 log.47081490._017753.job.log.tgz.1
[2025-10-29 21:09:06] -rw------- 1 boinc boinc      7748 Oct 29 21:08 heartbeat.json
[2025-10-29 21:09:06] -rw-r--r-- 1 boinc boinc      8192 Oct 29 21:08 boinc_mmap_file
[2025-10-29 21:09:06] -rw-r--r-- 1 boinc boinc        27 Oct 29 21:08 wrapper_checkpoint.txt
[2025-10-29 21:09:06] -rw------- 1 boinc boinc       746 Oct 29 21:09 pilotlog.txt
[2025-10-29 21:09:06] -rw------- 1 boinc boinc    679259 Oct 29 21:09 log.47081490._017753.job.log.1
[2025-10-29 21:09:06] -rw------- 1 boinc boinc       357 Oct 29 21:09 output.list
[2025-10-29 21:09:06] -rw-r--r-- 1 boinc boinc       620 Oct 29 21:09 runtime_log
[2025-10-29 21:09:06] -rw------- 1 boinc boinc    931840 Oct 29 21:09 result.tar.gz
[2025-10-29 21:09:06] -rw-r--r-- 1 boinc boinc      8797 Oct 29 21:09 runtime_log.err
[2025-10-29 21:09:06] -rw------- 1 boinc boinc       662 Oct 29 21:09 lgpLDmJMLY8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmjUHODmHfNAPo.diag
[2025-10-29 21:09:06] -rw-r--r-- 1 boinc boinc     21885 Oct 29 21:09 stderr.txt
[2025-10-29 21:09:06] HITS file was successfully produced:
[2025-10-29 21:09:06] -rw------- 1 boinc boinc 183278483 Oct 29 21:08 shared/HITS.pool.root.1
[2025-10-29 21:09:06]  *** Contents of shared directory: ***
[2025-10-29 21:09:06] total 391156
[2025-10-29 21:09:06] -rw-r--r-- 2 boinc boinc 215732005 Oct 29 19:51 ATLAS.root_0
[2025-10-29 21:09:06] -rw-r--r-- 2 boinc boinc    569676 Oct 29 19:51 input.tar.gz
[2025-10-29 21:09:06] -rw-r--r-- 2 boinc boinc     15120 Oct 29 19:51 start_atlas.sh
[2025-10-29 21:09:06] -rw------- 1 boinc boinc 183278483 Oct 29 21:08 HITS.pool.root.1
[2025-10-29 21:09:06] -rw------- 1 boinc boinc    931840 Oct 29 21:09 result.tar.gz
21:09:08 (365567): run_atlas exited; CPU time 13113.579707
21:09:08 (365567): called boinc_finish(0)

</stderr_txt>
]]>

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