Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
04:19:38 (1395072): wrapper (7.7.26015): starting
04:19:38 (1395072): wrapper: running run_atlas (--nthreads 11)
[2025-10-29 04:19:38] Arguments: --nthreads 11
[2025-10-29 04:19:38] Threads: 11
[2025-10-29 04:19:38] Checking for CVMFS
[2025-10-29 04:19:39] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-29 04:19:39] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-29 04:19:39] Running cvmfs_config stat atlas.cern.ch
[2025-10-29 04:19:39] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-29 04:19:39] 2.13.2.0 335177 409 65116 152258 2 57 17381001 32935937 3664 16776704 0 1978313 99.910 281775 53125 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-10-29 04:19:39] CVMFS is ok
[2025-10-29 04:19:39] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-29 04:19:39] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-29 04:19:39] Further information can be found at the LHC@home message board.
[2025-10-29 04:19:39] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-29 04:19:39] Checking for apptainer binary...
[2025-10-29 04:19:39] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-29 04:19:39] Running /usr/bin/apptainer --version
[2025-10-29 04:19:39] apptainer version 1.4.3-1.el9
[2025-10-29 04:19:39] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-29 04:19:39] c7-11-13.aglt2.org
[2025-10-29 04:19:39] apptainer works
[2025-10-29 04:19:39] Set ATHENA_PROC_NUMBER=11
[2025-10-29 04:19:39] Set ATHENA_CORE_NUMBER=11
[2025-10-29 04:19:39] Starting ATLAS job with PandaID=6864335239
[2025-10-29 04:19:39] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-29 05:02:00]  *** The last 200 lines of the pilot log: ***
[2025-10-29 05:02:00]  replicas=None
[2025-10-29 05:02:00]  scope=mc23_13p6TeV
[2025-10-29 05:02:00]  status=None
[2025-10-29 05:02:00]  status_code=0
[2025-10-29 05:02:00]  storage_token=
[2025-10-29 05:02:00]  surl=/tmp/boinchome/slots/1/PanDA_Pilot-6864335239/log.47081490._007672.job.log.tgz.1
[2025-10-29 05:02:00]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/4d/1e/log.47081490._007672.job.log.tgz.1
[2025-10-29 05:02:00]  workdir=None
[2025-10-29 05:02:00] ]
[2025-10-29 05:02:00] 2025-10-29 09:01:02,901 | INFO     | transferring file log.47081490._007672.job.log.tgz.1 from /tmp/boinchome/slots/1/PanDA_Pilot-6864335239/log.47081490._007672.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-10-29 05:02:00] 2025-10-29 09:01:02,902 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/1/PanDA_Pilot-6864335239/log.47081490._007672.job.log.tgz.1 /tmp/boinchome/slots/1/log.47081490._007672.job
[2025-10-29 05:02:00] 2025-10-29 09:01:02,926 | INFO     | adding to output.list: log.47081490._007672.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/4d/1e/log.47081490._007672.job.log.tg
[2025-10-29 05:02:00] 2025-10-29 09:01:02,927 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-10-29 05:02:00] 2025-10-29 09:01:02,927 | INFO     | summary of transferred files:
[2025-10-29 05:02:00] 2025-10-29 09:01:02,927 | INFO     |  -- lfn=log.47081490._007672.job.log.tgz.1, status_code=0, status=transferred
[2025-10-29 05:02:00] 2025-10-29 09:01:02,927 | INFO     | stage-out finished correctly
[2025-10-29 05:02:00] 2025-10-29 09:01:03,525 | INFO     | monitor loop #189: job 0:6864335239 is in state 'finished'
[2025-10-29 05:02:00] 2025-10-29 09:01:03,525 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-29 05:02:00] 2025-10-29 09:01:04,141 | INFO     | time since job start (2474s) is within the limit (172800.0s)
[2025-10-29 05:02:00] 2025-10-29 09:01:05,387 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-10-29 05:02:00] 2025-10-29 09:01:05,463 | INFO     | job 6864335239 has state=finished
[2025-10-29 05:02:00] 2025-10-29 09:01:05,464 | INFO     | preparing for final server update for job 6864335239 in state='finished'
[2025-10-29 05:02:00] 2025-10-29 09:01:05,464 | INFO     | this job has now completed (state=finished)
[2025-10-29 05:02:00] 2025-10-29 09:01:05,464 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-10-29 05:02:00] 2025-10-29 09:01:05,464 | INFO     | log transfer has been attempted: DONE
[2025-10-29 05:02:00] 2025-10-29 09:01:05,465 | INFO     | job 6864335239 has finished - writing final server update
[2025-10-29 05:02:00] 2025-10-29 09:01:05,465 | INFO     | total number of processed events: 400 (read)
[2025-10-29 05:02:00] 2025-10-29 09:01:05,466 | INFO     | executing command: lscpu
[2025-10-29 05:02:00] 2025-10-29 09:01:05,529 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-10-29 05:02:00] 2025-10-29 09:01:06,027 | INFO     | monitor loop #190: job 0:6864335239 is in state 'finished'
[2025-10-29 05:02:00] 2025-10-29 09:01:06,028 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-29 05:02:00] 2025-10-29 09:01:06,148 | INFO     | time since job start (2476s) is within the limit (172800.0s)
[2025-10-29 05:02:00] 2025-10-29 09:01:08,157 | INFO     | time since job start (2478s) is within the limit (172800.0s)
[2025-10-29 05:02:00] 2025-10-29 09:01:08,531 | INFO     | monitor loop #191: job 0:6864335239 is in state 'finished'
[2025-10-29 05:02:00] 2025-10-29 09:01:08,532 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-29 05:02:00] 2025-10-29 09:01:09,602 | INFO     | CPU arch script returned: x86-64-v3
[2025-10-29 05:02:00] 2025-10-29 09:01:09,619 | INFO     | found 32 cores (16 cores per socket, 2 sockets) HT, CPU MHz: 3208.081031249999
[2025-10-29 05:02:00] 2025-10-29 09:01:09,629 | INFO     | using path: /tmp/boinchome/slots/1/PanDA_Pilot-6864335239/memory_monitor_summary.json (trf name=prmon)
[2025-10-29 05:02:00] 2025-10-29 09:01:09,630 | INFO     | extracted standard info from prmon json
[2025-10-29 05:02:00] 2025-10-29 09:01:09,630 | INFO     | extracted standard memory fields from prmon json
[2025-10-29 05:02:00] 2025-10-29 09:01:09,630 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-29 05:02:00] 2025-10-29 09:01:09,630 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-29 05:02:00] 2025-10-29 09:01:09,630 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-29 05:02:00] 2025-10-29 09:01:09,632 | INFO     | fitting pss+swap vs Time
[2025-10-29 05:02:00] 2025-10-29 09:01:09,632 | INFO     | sum of square deviations: 12176972.5
[2025-10-29 05:02:00] 2025-10-29 09:01:09,632 | INFO     | sum of deviations: -2555555594.0
[2025-10-29 05:02:00] 2025-10-29 09:01:09,632 | INFO     | mean x: 1761727327.5
[2025-10-29 05:02:00] 2025-10-29 09:01:09,632 | INFO     | mean y: 2586176.529411765
[2025-10-29 05:02:00] 2025-10-29 09:01:09,632 | INFO     | -- intersect: 369732593113.4174
[2025-10-29 05:02:00] 2025-10-29 09:01:09,632 | INFO     | intersect: 369732593113.4174
[2025-10-29 05:02:00] 2025-10-29 09:01:09,632 | INFO     | chi2: 0.03431755116282756
[2025-10-29 05:02:00] 2025-10-29 09:01:09,632 | INFO     | -- intersect: 369732593113.4174
[2025-10-29 05:02:00] 2025-10-29 09:01:09,633 | INFO     | current memory leak: -209.87 B/s (using 34 data points, chi2=0.03)
[2025-10-29 05:02:00] 2025-10-29 09:01:09,633 | INFO     | could have reported an average CPU frequency of 3202 MHz (5 samples)
[2025-10-29 05:02:00] 2025-10-29 09:01:09,633 | INFO     | ..............................
[2025-10-29 05:02:00] 2025-10-29 09:01:09,633 | INFO     | . Timing measurements:
[2025-10-29 05:02:00] 2025-10-29 09:01:09,633 | INFO     | . get job = 0 s
[2025-10-29 05:02:00] 2025-10-29 09:01:09,633 | INFO     | . initial setup = 2 s
[2025-10-29 05:02:00] 2025-10-29 09:01:09,633 | INFO     | . payload setup = 5 s
[2025-10-29 05:02:00] 2025-10-29 09:01:09,633 | INFO     | . stage-in = 0 s
[2025-10-29 05:02:00] 2025-10-29 09:01:09,633 | INFO     | . payload execution = 2446 s
[2025-10-29 05:02:00] 2025-10-29 09:01:09,633 | INFO     | . stage-out = 0 s
[2025-10-29 05:02:00] 2025-10-29 09:01:09,633 | INFO     | . log creation = 0 s
[2025-10-29 05:02:00] 2025-10-29 09:01:09,634 | INFO     | ..............................
[2025-10-29 05:02:00] 2025-10-29 09:01:09,715 | INFO     | 
[2025-10-29 05:02:00] 2025-10-29 09:01:09,715 | INFO     | job summary report
[2025-10-29 05:02:00] 2025-10-29 09:01:09,715 | INFO     | --------------------------------------------------
[2025-10-29 05:02:00] 2025-10-29 09:01:09,715 | INFO     | PanDA job id: 6864335239
[2025-10-29 05:02:00] 2025-10-29 09:01:09,715 | INFO     | task id: 47081490
[2025-10-29 05:02:00] 2025-10-29 09:01:09,715 | INFO     | errors: (none)
[2025-10-29 05:02:00] 2025-10-29 09:01:09,715 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-29 05:02:00] 2025-10-29 09:01:09,716 | INFO     | pilot state: finished 
[2025-10-29 05:02:00] 2025-10-29 09:01:09,716 | INFO     | transexitcode: 0
[2025-10-29 05:02:00] 2025-10-29 09:01:09,716 | INFO     | exeerrorcode: 0
[2025-10-29 05:02:00] 2025-10-29 09:01:09,716 | INFO     | exeerrordiag: 
[2025-10-29 05:02:00] 2025-10-29 09:01:09,716 | INFO     | exitcode: 0
[2025-10-29 05:02:00] 2025-10-29 09:01:09,716 | INFO     | exitmsg: OK
[2025-10-29 05:02:00] 2025-10-29 09:01:09,716 | INFO     | cpuconsumptiontime: 23659 s
[2025-10-29 05:02:00] 2025-10-29 09:01:09,716 | INFO     | nevents: 400
[2025-10-29 05:02:00] 2025-10-29 09:01:09,716 | INFO     | neventsw: 0
[2025-10-29 05:02:00] 2025-10-29 09:01:09,716 | INFO     | pid: 1407127
[2025-10-29 05:02:00] 2025-10-29 09:01:09,716 | INFO     | pgrp: 1407127
[2025-10-29 05:02:00] 2025-10-29 09:01:09,716 | INFO     | corecount: 11
[2025-10-29 05:02:00] 2025-10-29 09:01:09,716 | INFO     | event service: False
[2025-10-29 05:02:00] 2025-10-29 09:01:09,716 | INFO     | sizes: {0: 2348883, 4: 2349145, 11: 2349173, 2455: 2374403, 2456: 2374402, 2457: 2383456, 2459: 2383640, 2464: 2383866}
[2025-10-29 05:02:00] 2025-10-29 09:01:09,716 | INFO     | --------------------------------------------------
[2025-10-29 05:02:00] 2025-10-29 09:01:09,716 | INFO     | 
[2025-10-29 05:02:00] 2025-10-29 09:01:09,717 | INFO     | executing command: ls -lF /tmp/boinchome/slots/1
[2025-10-29 05:02:00] 2025-10-29 09:01:09,740 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-29 05:02:00] 2025-10-29 09:01:09,741 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-29 05:02:00] 2025-10-29 09:01:09,741 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-29 05:02:00] 2025-10-29 09:01:09,741 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-29 05:02:00] 2025-10-29 09:01:09,741 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-29 05:02:00] 2025-10-29 09:01:09,741 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-29 05:02:00] 2025-10-29 09:01:09,741 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-29 05:02:00] 2025-10-29 09:01:09,741 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-29 05:02:00] 2025-10-29 09:01:09,741 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-29 05:02:00] 2025-10-29 09:01:09,741 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-29 05:02:00] 2025-10-29 09:01:09,741 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-29 05:02:00] 2025-10-29 09:01:09,741 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-29 05:02:00] 2025-10-29 09:01:09,741 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-29 05:02:00] 2025-10-29 09:01:09,741 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-29 05:02:00] 2025-10-29 09:01:09,742 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-29 05:02:00] 2025-10-29 09:01:09,742 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-29 05:02:00] 2025-10-29 09:01:09,742 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-29 05:02:00] 2025-10-29 09:01:09,742 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-29 05:02:00] 2025-10-29 09:01:09,742 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-29 05:02:00] 2025-10-29 09:01:09,742 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-29 05:02:00] 2025-10-29 09:01:09,742 | INFO     | job 6864335239 has completed (purged errors)
[2025-10-29 05:02:00] 2025-10-29 09:01:09,742 | INFO     | overall cleanup function is called
[2025-10-29 05:02:00] 2025-10-29 09:01:10,751 | INFO     | --- collectZombieJob: --- 10, [1407127]
[2025-10-29 05:02:00] 2025-10-29 09:01:10,751 | INFO     | zombie collector waiting for pid 1407127
[2025-10-29 05:02:00] 2025-10-29 09:01:10,751 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-29 05:02:00] 2025-10-29 09:01:10,751 | INFO     | collected zombie processes
[2025-10-29 05:02:00] 2025-10-29 09:01:10,751 | INFO     | will attempt to kill all subprocesses of pid=1407127
[2025-10-29 05:02:00] 2025-10-29 09:01:11,017 | INFO     | process IDs to be killed: [1407127] (in reverse order)
[2025-10-29 05:02:00] 2025-10-29 09:01:11,114 | WARNING  | found no corresponding commands to process id(s)
[2025-10-29 05:02:00] 2025-10-29 09:01:11,114 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-29 05:02:00] 2025-10-29 09:01:11,125 | INFO     | did not find any defunct processes belonging to 1407127
[2025-10-29 05:02:00] 2025-10-29 09:01:11,133 | INFO     | did not find any defunct processes belonging to 1407127
[2025-10-29 05:02:00] 2025-10-29 09:01:11,134 | INFO     | ready for new job
[2025-10-29 05:02:00] 2025-10-29 09:01:11,134 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-29 05:02:00] 2025-10-29 09:01:11,135 | INFO     | ***************************************
[2025-10-29 05:02:00] 2025-10-29 09:01:11,135 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-29 05:02:00] 2025-10-29 09:01:11,135 | INFO     | ***************************************
[2025-10-29 05:02:00] 2025-10-29 09:01:11,135 | INFO     | 
[2025-10-29 05:02:00] 2025-10-29 09:01:11,151 | INFO     | architecture information:
[2025-10-29 05:02:00] 2025-10-29 09:01:11,151 | INFO     | executing command: cat /etc/os-release
[2025-10-29 05:02:00] 2025-10-29 09:01:11,168 | INFO     | cat /etc/os-release:
[2025-10-29 05:02:00] NAME="CentOS Linux"
[2025-10-29 05:02:00] VERSION="7 (Core)"
[2025-10-29 05:02:00] ID="centos"
[2025-10-29 05:02:00] ID_LIKE="rhel fedora"
[2025-10-29 05:02:00] VERSION_ID="7"
[2025-10-29 05:02:00] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-29 05:02:00] ANSI_COLOR="0;31"
[2025-10-29 05:02:00] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-29 05:02:00] HOME_URL="https://www.centos.org/"
[2025-10-29 05:02:00] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-29 05:02:00] 
[2025-10-29 05:02:00] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-29 05:02:00] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-29 05:02:00] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-29 05:02:00] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-29 05:02:00] 
[2025-10-29 05:02:00] 2025-10-29 09:01:11,168 | INFO     | ***************************************
[2025-10-29 05:02:00] 2025-10-29 09:01:11,671 | INFO     | executing command: df -mP /tmp/boinchome/slots/1
[2025-10-29 05:02:00] 2025-10-29 09:01:11,687 | INFO     | sufficient remaining disk space (94477746176 B)
[2025-10-29 05:02:00] 2025-10-29 09:01:11,687 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-29 05:02:00] 2025-10-29 09:01:11,688 | INFO     | current server update state: UPDATING_FINAL
[2025-10-29 05:02:00] 2025-10-29 09:01:11,688 | INFO     | update_server=False
[2025-10-29 05:02:00] 2025-10-29 09:01:11,688 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-29 05:02:00] 2025-10-29 09:01:11,688 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-29 05:02:00] 2025-10-29 09:01:11,688 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-29 05:02:00] 2025-10-29 09:01:11,689 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-29 05:02:00] 2025-10-29 09:01:12,040 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-29 05:02:00] 2025-10-29 09:01:12,040 | INFO     | aborting loop
[2025-10-29 05:02:00] 2025-10-29 09:01:12,228 | INFO     | all payload control threads have been joined
[2025-10-29 05:02:00] 2025-10-29 09:01:12,658 | INFO     | all data control threads have been joined
[2025-10-29 05:02:00] 2025-10-29 09:01:12,693 | INFO     | [job] retrieve thread has finished
[2025-10-29 05:02:00] 2025-10-29 09:01:12,694 | INFO     | [job] queue monitor thread has finished
[2025-10-29 05:02:00] 2025-10-29 09:01:13,044 | INFO     | [job] job monitor thread has finished
[2025-10-29 05:02:00] 2025-10-29 09:01:13,110 | INFO     | [job] validate thread has finished
[2025-10-29 05:02:00] 2025-10-29 09:01:13,155 | INFO     | all job control threads have been joined
[2025-10-29 05:02:00] 2025-10-29 09:01:13,234 | INFO     | [payload] control thread has finished
[2025-10-29 05:02:00] 2025-10-29 09:01:13,338 | INFO     | [job] create_data_payload thread has finished
[2025-10-29 05:02:00] 2025-10-29 09:01:13,346 | INFO     | [data] copytool_in thread has finished
[2025-10-29 05:02:00] 2025-10-29 09:01:13,461 | INFO     | [payload] validate_pre thread has finished
[2025-10-29 05:02:00] 2025-10-29 09:01:13,523 | INFO     | [payload] failed_post thread has finished
[2025-10-29 05:02:00] 2025-10-29 09:01:13,663 | INFO     | [data] control thread has finished
[2025-10-29 05:02:00] 2025-10-29 09:01:13,695 | INFO     | [data] copytool_out thread has finished
[2025-10-29 05:02:00] 2025-10-29 09:01:13,978 | INFO     | [payload] validate_post thread has finished
[2025-10-29 05:02:00] 2025-10-29 09:01:14,117 | INFO     | [payload] execute_payloads thread has finished
[2025-10-29 05:02:00] 2025-10-29 09:01:14,160 | INFO     | [job] control thread has finished
[2025-10-29 05:02:00] 2025-10-29 09:01:15,695 | INFO     | [data] queue_monitor thread has finished
[2025-10-29 05:02:00] 2025-10-29 09:01:22,339 | INFO     | job.realtimelogging is not enabled
[2025-10-29 05:02:00] 2025-10-29 09:01:23,344 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-29 05:02:00] 2025-10-29 09:01:41,589 | INFO     | PID=1399326 has CPU usage=4.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-29 05:02:00] 2025-10-29 09:01:41,590 | INFO     | .. there are 5 such processes running
[2025-10-29 05:02:00] 2025-10-29 09:01:41,591 | INFO     | found 0 job(s) in 20 queues
[2025-10-29 05:02:00] 2025-10-29 09:01:41,591 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-29 05:02:00] 2025-10-29 09:01:41,591 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-29 05:02:00] 2025-10-29 09:01:53,883 | INFO     | [monitor] cgroup control has ended
[2025-10-29 05:02:00] 2025-10-29 09:01:54,888 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140653062690624)>', '<ExcThread(monitor, started 140652570461952)>']
[2025-10-29 05:02:00] 2025-10-29 09:01:55,657 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-29 05:02:00] 2025-10-29 09:01:55,657 | INFO     | [monitor] control thread has ended
[2025-10-29 05:02:00] 2025-10-29 09:01:59,915 | INFO     | all workflow threads have been joined
[2025-10-29 05:02:00] 2025-10-29 09:01:59,915 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-29 05:02:00] 2025-10-29 09:01:59,915 | INFO     | traces error code: 0
[2025-10-29 05:02:00] 2025-10-29 09:01:59,916 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-29 05:02:00] 2025-10-29 09:02:00,063 [wrapper] ==== pilot stdout END ====
[2025-10-29 05:02:00] 2025-10-29 09:02:00,066 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-29 05:02:00] 2025-10-29 09:02:00,069 [wrapper] pilotpid: 1399326
[2025-10-29 05:02:00] 2025-10-29 09:02:00,072 [wrapper] Pilot exit status: 0
[2025-10-29 05:02:00] 2025-10-29 09:02:00,084 [wrapper] pandaids: 6864335239
[2025-10-29 05:02:00] 2025-10-29 09:02:00,157 [wrapper] cleanup supervisor_pilot 1499857 1399327
[2025-10-29 05:02:00] 2025-10-29 09:02:00,161 [wrapper] Test setup, not cleaning
[2025-10-29 05:02:00] 2025-10-29 09:02:00,163 [wrapper] apfmon messages muted
[2025-10-29 05:02:00] 2025-10-29 09:02:00,165 [wrapper] ==== wrapper stdout END ====
[2025-10-29 05:02:00] 2025-10-29 09:02:00,167 [wrapper] ==== wrapper stderr END ====
[2025-10-29 05:02:00]  *** Error codes and diagnostics ***
[2025-10-29 05:02:00]     "exeErrorCode": 0,
[2025-10-29 05:02:00]     "exeErrorDiag": "",
[2025-10-29 05:02:00]     "pilotErrorCode": 0,
[2025-10-29 05:02:00]     "pilotErrorDiag": "",
[2025-10-29 05:02:00]  *** Listing of results directory ***
[2025-10-29 05:02:00] total 392364
[2025-10-29 05:02:00] -rwx------. 1 boincer umatlas     36292 Oct 29 02:14 runpilot2-wrapper.sh
[2025-10-29 05:02:00] -rw-r--r--. 1 boincer umatlas    557409 Oct 29 02:14 pilot3.tar.gz
[2025-10-29 05:02:00] -rw-r--r--. 1 boincer umatlas      5112 Oct 29 02:15 queuedata.json
[2025-10-29 05:02:00] -rw-r--r--. 1 boincer umatlas       100 Oct 29 04:19 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-29 05:02:00] -rwxr-xr-x. 1 boincer umatlas      7986 Oct 29 04:19 run_atlas
[2025-10-29 05:02:00] -rw-r--r--. 1 boincer umatlas       105 Oct 29 04:19 job.xml
[2025-10-29 05:02:00] -rw-r--r--. 2 boincer umatlas 215751023 Oct 29 04:19 EVNT.47081487._000297.pool.root.1
[2025-10-29 05:02:00] -rw-r--r--. 2 boincer umatlas     15120 Oct 29 04:19 start_atlas.sh
[2025-10-29 05:02:00] drwxrwx--x. 2 boincer umatlas      4096 Oct 29 04:19 shared
[2025-10-29 05:02:00] -rw-r--r--. 2 boincer umatlas    569675 Oct 29 04:19 input.tar.gz
[2025-10-29 05:02:00] -rw-r--r--. 1 boincer umatlas         0 Oct 29 04:19 boinc_lockfile
[2025-10-29 05:02:00] -rw-r--r--. 1 boincer umatlas      2525 Oct 29 04:19 pandaJob.out
[2025-10-29 05:02:00] -rw-------. 1 boincer umatlas    979090 Oct 29 04:19 agis_schedconf.cvmfs.json
[2025-10-29 05:02:00] -rw-------. 1 boincer umatlas   1560632 Oct 29 04:19 agis_ddmendpoints.agis.ALL.json
[2025-10-29 05:02:00] drwx------. 5 boincer umatlas      4096 Oct 29 04:19 pilot3
[2025-10-29 05:02:00] -rw-r--r--. 1 boincer umatlas      6901 Oct 29 04:58 init_data.xml
[2025-10-29 05:02:00] -rw-------. 1 boincer umatlas 180638982 Oct 29 05:00 HITS.47081490._007672.pool.root.1
[2025-10-29 05:02:00] -rw-r--r--. 1 boincer umatlas       529 Oct 29 05:00 boinc_task_state.xml
[2025-10-29 05:02:00] -rw-------. 1 boincer umatlas      1024 Oct 29 05:00 memory_monitor_summary.json
[2025-10-29 05:02:00] -rw-------. 1 boincer umatlas    350163 Oct 29 05:01 log.47081490._007672.job.log.tgz.1
[2025-10-29 05:02:00] -rw-------. 1 boincer umatlas      7771 Oct 29 05:01 heartbeat.json
[2025-10-29 05:02:00] -rw-------. 1 boincer umatlas        95 Oct 29 05:01 pilot_heartbeat.json
[2025-10-29 05:02:00] -rw-------. 1 boincer umatlas      4895 Oct 29 05:01 pilotlog.txt
[2025-10-29 05:02:00] -rw-r--r--. 1 boincer umatlas        27 Oct 29 05:02 wrapper_checkpoint.txt
[2025-10-29 05:02:00] -rw-r--r--. 1 boincer umatlas      8192 Oct 29 05:02 boinc_mmap_file
[2025-10-29 05:02:00] -rw-------. 1 boincer umatlas    392721 Oct 29 05:02 log.47081490._007672.job.log.1
[2025-10-29 05:02:00] -rw-------. 1 boincer umatlas       357 Oct 29 05:02 output.list
[2025-10-29 05:02:00] -rw-r--r--. 1 boincer umatlas       620 Oct 29 05:02 runtime_log
[2025-10-29 05:02:00] -rw-------. 1 boincer umatlas    757760 Oct 29 05:02 result.tar.gz
[2025-10-29 05:02:00] -rw-r--r--. 1 boincer umatlas      8705 Oct 29 05:02 runtime_log.err
[2025-10-29 05:02:00] -rw-------. 1 boincer umatlas       651 Oct 29 05:02 gluKDmtcEY8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmOwFODmoN7aln.diag
[2025-10-29 05:02:00] -rw-r--r--. 1 boincer umatlas     21834 Oct 29 05:02 stderr.txt
[2025-10-29 05:02:00] HITS file was successfully produced:
[2025-10-29 05:02:00] -rw-------. 1 boincer umatlas 180638982 Oct 29 05:00 shared/HITS.pool.root.1
[2025-10-29 05:02:00]  *** Contents of shared directory: ***
[2025-10-29 05:02:00] total 388428
[2025-10-29 05:02:00] -rw-r--r--. 2 boincer umatlas 215751023 Oct 29 04:19 ATLAS.root_0
[2025-10-29 05:02:00] -rw-r--r--. 2 boincer umatlas     15120 Oct 29 04:19 start_atlas.sh
[2025-10-29 05:02:00] -rw-r--r--. 2 boincer umatlas    569675 Oct 29 04:19 input.tar.gz
[2025-10-29 05:02:00] -rw-------. 1 boincer umatlas 180638982 Oct 29 05:00 HITS.pool.root.1
[2025-10-29 05:02:00] -rw-------. 1 boincer umatlas    757760 Oct 29 05:02 result.tar.gz
05:02:02 (1395072): run_atlas exited; CPU time 23665.973290
05:02:02 (1395072): called boinc_finish(0)

</stderr_txt>
]]>

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