Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
09:53:33 (91270): wrapper (7.7.26015): starting
09:53:33 (91270): wrapper: running run_atlas (--nthreads 4)
[2025-10-29 09:53:33] Arguments: --nthreads 4
[2025-10-29 09:53:33] Threads: 4
[2025-10-29 09:53:33] Checking for CVMFS
[2025-10-29 09:53:33] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-29 09:53:33] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-29 09:53:33] Running cvmfs_config stat atlas.cern.ch
[2025-10-29 09:53:33] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-29 09:53:33] 2.9.2.0 66280 65 51960 152258 2 57 26302252 36864001 0 130560 0 65391 99.970 4143 10874 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-10-29 09:53:33] CVMFS is ok
[2025-10-29 09:53:33] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-29 09:53:33] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-29 09:53:33] Further information can be found at the LHC@home message board.
[2025-10-29 09:53:33] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-29 09:53:33] Checking for apptainer binary...
[2025-10-29 09:53:33] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-29 09:53:33] Running /usr/bin/apptainer --version
[2025-10-29 09:53:33] apptainer version 1.4.1-1.1
[2025-10-29 09:53:33] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-29 09:53:33] cosA131b
[2025-10-29 09:53:33] apptainer works
[2025-10-29 09:53:33] Set ATHENA_PROC_NUMBER=4
[2025-10-29 09:53:33] Set ATHENA_CORE_NUMBER=4
[2025-10-29 09:53:33] Starting ATLAS job with PandaID=6864342361
[2025-10-29 09:53:33] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-29 10:01:48]  *** The last 200 lines of the pilot log: ***
[2025-10-29 10:01:48] 2025-10-29 09:00:45,211 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-29 10:01:48] 2025-10-29 09:00:45,211 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-29 10:01:48] 2025-10-29 09:00:45,211 | WARNING  | wrong length of table data, x=[1761728045.0, 1761728106.0, 1761728167.0, 1761728228.0, 1761728289.0], y=[2968.0, 1344885.0, 1445636.0, 2362239.0, 2271392.0] (must 
[2025-10-29 10:01:48] 2025-10-29 09:00:45,211 | INFO     | could have reported an average CPU frequency of 3626 MHz (4 samples)
[2025-10-29 10:01:48] 2025-10-29 09:00:45,211 | INFO     | ..............................
[2025-10-29 10:01:48] 2025-10-29 09:00:45,211 | INFO     | . Timing measurements:
[2025-10-29 10:01:48] 2025-10-29 09:00:45,211 | INFO     | . get job = 0 s
[2025-10-29 10:01:48] 2025-10-29 09:00:45,211 | INFO     | . initial setup = 1 s
[2025-10-29 10:01:48] 2025-10-29 09:00:45,211 | INFO     | . payload setup = 4 s
[2025-10-29 10:01:48] 2025-10-29 09:00:45,211 | INFO     | . stage-in = 0 s
[2025-10-29 10:01:48] 2025-10-29 09:00:45,211 | INFO     | . payload execution = 277 s
[2025-10-29 10:01:48] 2025-10-29 09:00:45,211 | INFO     | . stage-out = 0 s
[2025-10-29 10:01:48] 2025-10-29 09:00:45,211 | INFO     | . log creation = 0 s
[2025-10-29 10:01:48] 2025-10-29 09:00:45,211 | INFO     | ..............................
[2025-10-29 10:01:48] 2025-10-29 09:00:45,211 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-10-29 10:01:48] 2025-10-29 09:00:45,211 | INFO     | executing command: tail -n 20 /local/data/boinc/slots/0/PanDA_Pilot-6864342361/pilotlog.txt
[2025-10-29 10:01:48] 2025-10-29 09:00:45,224 | WARNING  | detected the following tail of warning/fatal messages in the pilot log:
[2025-10-29 10:01:48] - Log from pilotlog.txt -
[2025-10-29 10:01:48] 2025-10-29 09:00:45,210 | INFO     | using path: /local/data/boinc/slots/0/PanDA_Pilot-6864342361/memory_monitor_summary.json (trf name=prmon)
[2025-10-29 10:01:48] 2025-10-29 09:00:45,210 | INFO     | extracted standard info from prmon json
[2025-10-29 10:01:48] 2025-10-29 09:00:45,210 | INFO     | extracted standard memory fields from prmon json
[2025-10-29 10:01:48] 2025-10-29 09:00:45,210 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-29 10:01:48] 2025-10-29 09:00:45,211 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-29 10:01:48] 2025-10-29 09:00:45,211 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-29 10:01:48] 2025-10-29 09:00:45,211 | WARNING  | wrong length of table data, x=[1761728045.0, 1761728106.0, 1761728167.0, 1761728228.0, 1761728289.0], y=[2968.0, 1344885.0, 1445636.0, 2362239.0, 2271392.0] (must 
[2025-10-29 10:01:48] 2025-10-29 09:00:45,211 | INFO     | could have reported an average CPU frequency of 3626 MHz (4 samples)
[2025-10-29 10:01:48] 2025-10-29 09:00:45,211 | INFO     | ..............................
[2025-10-29 10:01:48] 2025-10-29 09:00:45,211 | INFO     | . Timing measurements:
[2025-10-29 10:01:48] 2025-10-29 09:00:45,211 | INFO     | . get job = 0 s
[2025-10-29 10:01:48] 2025-10-29 09:00:45,211 | INFO     | . initial setup = 1 s
[2025-10-29 10:01:48] 2025-10-29 09:00:45,211 | INFO     | . payload setup = 4 s
[2025-10-29 10:01:48] 2025-10-29 09:00:45,211 | INFO     | . stage-in = 0 s
[2025-10-29 10:01:48] 2025-10-29 09:00:45,211 | INFO     | . payload execution = 277 s
[2025-10-29 10:01:48] 2025-10-29 09:00:45,211 | INFO     | . stage-out = 0 s
[2025-10-29 10:01:48] 2025-10-29 09:00:45,211 | INFO     | . log creation = 0 s
[2025-10-29 10:01:48] 2025-10-29 09:00:45,211 | INFO     | ..............................
[2025-10-29 10:01:48] 2025-10-29 09:00:45,211 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-10-29 10:01:48] 2025-10-29 09:00:45,211 | INFO     | executing command: tail -n 20 /local/data/boinc/slots/0/PanDA_Pilot-6864342361/pilotlog.txt
[2025-10-29 10:01:48] 2025-10-29 09:00:45,225 | WARNING  | 
[2025-10-29 10:01:48] [begin log extracts]
[2025-10-29 10:01:48] - Log from pilotlog.txt -
[2025-10-29 10:01:48] 2025-10-29 09:00:45,210 | INFO     | using path: /local/data/boinc/slots/0/PanDA_Pilot-6864342361/memory_monitor_summary.json (trf name=prmon)
[2025-10-29 10:01:48] 2025-10-29 09:00:45,210 | INFO     | extracted standard info from prmon json
[2025-10-29 10:01:48] 2025-10-29 09:00:45,210 | INFO     | extracted standard memory fields from prmon json
[2025-10-29 10:01:48] 2025-10-29 09:00:45,210 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-29 10:01:48] 2025-10-29 09:00:45,211 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-29 10:01:48] 2025-10-29 09:00:45,211 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-29 10:01:48] 2025-10-29 09:00:45,211 | WARNING  | wrong length of table data, x=[1761728045.0, 1761728106.0, 1761728167.0, 1761728228.0, 1761728289.0], y=[2968.0, 1344885.0, 1445636.0, 2362239.0, 2271392.0] (must 
[2025-10-29 10:01:48] 2025-10-29 09:00:45,211 | INFO     | could have reported an average CPU frequency of 3626 MHz (4 samples)
[2025-10-29 10:01:48] 2025-10-29 09:00:45,211 | INFO     | ..............................
[2025-10-29 10:01:48] 2025-10-29 09:00:45,211 | INFO     | . Timing measurements:
[2025-10-29 10:01:48] 2025-10-29 09:00:45,211 | INFO     | . get job = 0 s
[2025-10-29 10:01:48] 2025-10-29 09:00:45,211 | INFO     | . initial setup = 1 s
[2025-10-29 10:01:48] 2025-10-29 09:00:45,211 | INFO     | . payload setup = 4 s
[2025-10-29 10:01:48] 2025-10-29 09:00:45,211 | INFO     | . stage-in = 0 s
[2025-10-29 10:01:48] 2025-10-29 09:00:45,211 | INFO     | . payload execution = 277 s
[2025-10-29 10:01:48] 2025-10-29 09:00:45,211 | INFO     | . stage-out = 0 s
[2025-10-29 10:01:48] 2025-10-29 09:00:45,211 | INFO     | . log creation = 0 s
[2025-10-29 10:01:48] 2025-10-29 09:00:45,211 | INFO     | ..............................
[2025-10-29 10:01:48] 2025-10-29 09:00:45,211 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-10-29 10:01:48] 2025-10-29 09:00:45,211 | INFO     | executing command: tail -n 20 /local/data/boinc/slots/0/PanDA_Pilot-6864342361/pilotlog.txt
[2025-10-29 10:01:48] [end log extracts]
[2025-10-29 10:01:48] 2025-10-29 09:00:45,225 | WARNING  | pilotErrorCodes = [1305] (will report primary/first error code)
[2025-10-29 10:01:48] 2025-10-29 09:00:45,225 | WARNING  | pilotErrorDiags = ['Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: EVNTtoHITS got a 
[2025-10-29 10:01:48] 2025-10-29 09:00:45,725 | INFO     | 
[2025-10-29 10:01:48] 2025-10-29 09:00:45,725 | INFO     | job summary report
[2025-10-29 10:01:48] 2025-10-29 09:00:45,725 | INFO     | --------------------------------------------------
[2025-10-29 10:01:48] 2025-10-29 09:00:45,725 | INFO     | PanDA job id: 6864342361
[2025-10-29 10:01:48] 2025-10-29 09:00:45,725 | INFO     | task id: 47081490
[2025-10-29 10:01:48] 2025-10-29 09:00:45,725 | INFO     | error 1/1: 1305: Failed to execute payload:PyJobTransforms.transform.execute 2025-10-29 08:58:34,149 CRITICAL Transform executor raised TransformValidationExceptio
[2025-10-29 10:01:48] 2025-10-29 09:00:45,725 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-29 10:01:48] 2025-10-29 09:00:45,725 | INFO     | pilot state: failed 
[2025-10-29 10:01:48] 2025-10-29 09:00:45,725 | INFO     | transexitcode: 65
[2025-10-29 10:01:48] 2025-10-29 09:00:45,726 | INFO     | exeerrorcode: 65
[2025-10-29 10:01:48] 2025-10-29 09:00:45,726 | INFO     | exeerrordiag: EVNTtoHITS got a SIGHUP signal (exit code 129); Logfile error in log.EVNTtoHITS: "CoreDumpSvc   FATAL Caught fatal signal. Printing details to stdout
[2025-10-29 10:01:48] 2025-10-29 09:00:45,726 | INFO     | exitcode: 65
[2025-10-29 10:01:48] 2025-10-29 09:00:45,726 | INFO     | exitmsg: EVNTtoHITS got a SIGHUP signal (exit code 129); Logfile error in log.EVNTtoHITS: "CoreDumpSvc   FATAL Caught fatal signal. Printing details to stdout."; P
[2025-10-29 10:01:48] 2025-10-29 09:00:45,726 | INFO     | cpuconsumptiontime: 170 s
[2025-10-29 10:01:48] 2025-10-29 09:00:45,726 | INFO     | nevents: 0
[2025-10-29 10:01:48] 2025-10-29 09:00:45,726 | INFO     | neventsw: 0
[2025-10-29 10:01:48] 2025-10-29 09:00:45,726 | INFO     | pid: 101665
[2025-10-29 10:01:48] 2025-10-29 09:00:45,726 | INFO     | pgrp: 101665
[2025-10-29 10:01:48] 2025-10-29 09:00:45,726 | INFO     | corecount: 4
[2025-10-29 10:01:48] 2025-10-29 09:00:45,726 | INFO     | event service: False
[2025-10-29 10:01:48] 2025-10-29 09:00:45,726 | INFO     | sizes: {0: 2348715, 1: 2348914, 4: 2349176, 11: 2349204, 285: 2375747, 287: 2380045, 289: 2380229, 409: 2380423}
[2025-10-29 10:01:48] 2025-10-29 09:00:45,726 | INFO     | --------------------------------------------------
[2025-10-29 10:01:48] 2025-10-29 09:00:45,726 | INFO     | 
[2025-10-29 10:01:48] 2025-10-29 09:00:45,726 | INFO     | executing command: ls -lF /local/data/boinc/slots/0
[2025-10-29 10:01:48] 2025-10-29 09:00:45,746 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-29 10:01:48] 2025-10-29 09:00:45,747 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-29 10:01:48] 2025-10-29 09:00:45,747 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-29 10:01:48] 2025-10-29 09:00:45,747 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-29 10:01:48] 2025-10-29 09:00:45,747 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-29 10:01:48] 2025-10-29 09:00:45,747 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-29 10:01:48] 2025-10-29 09:00:45,747 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-29 10:01:48] 2025-10-29 09:00:45,747 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-29 10:01:48] 2025-10-29 09:00:45,747 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-29 10:01:48] 2025-10-29 09:00:45,747 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-29 10:01:48] 2025-10-29 09:00:45,747 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-29 10:01:48] 2025-10-29 09:00:45,747 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-29 10:01:48] 2025-10-29 09:00:45,747 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-29 10:01:48] 2025-10-29 09:00:45,747 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-29 10:01:48] 2025-10-29 09:00:45,747 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-29 10:01:48] 2025-10-29 09:00:45,747 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-29 10:01:48] 2025-10-29 09:00:45,747 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-29 10:01:48] 2025-10-29 09:00:45,747 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-29 10:01:48] 2025-10-29 09:00:45,747 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-29 10:01:48] 2025-10-29 09:00:45,747 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-29 10:01:48] 2025-10-29 09:00:45,747 | INFO     | job 6864342361 has completed (purged errors)
[2025-10-29 10:01:48] 2025-10-29 09:00:45,748 | INFO     | overall cleanup function is called
[2025-10-29 10:01:48] 2025-10-29 09:00:46,754 | INFO     | --- collectZombieJob: --- 10, [101665]
[2025-10-29 10:01:48] 2025-10-29 09:00:46,754 | INFO     | zombie collector waiting for pid 101665
[2025-10-29 10:01:48] 2025-10-29 09:00:46,754 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-29 10:01:48] 2025-10-29 09:00:46,754 | INFO     | collected zombie processes
[2025-10-29 10:01:48] 2025-10-29 09:00:46,754 | INFO     | will attempt to kill all subprocesses of pid=101665
[2025-10-29 10:01:48] 2025-10-29 09:00:46,799 | INFO     | process IDs to be killed: [101665] (in reverse order)
[2025-10-29 10:01:48] 2025-10-29 09:00:46,832 | WARNING  | found no corresponding commands to process id(s)
[2025-10-29 10:01:48] 2025-10-29 09:00:46,832 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-29 10:01:48] 2025-10-29 09:00:46,834 | INFO     | did not find any defunct processes belonging to 101665
[2025-10-29 10:01:48] 2025-10-29 09:00:46,835 | INFO     | did not find any defunct processes belonging to 101665
[2025-10-29 10:01:48] 2025-10-29 09:00:46,835 | INFO     | ready for new job
[2025-10-29 10:01:48] 2025-10-29 09:00:46,835 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-29 10:01:48] 2025-10-29 09:00:46,836 | INFO     | ***************************************
[2025-10-29 10:01:48] 2025-10-29 09:00:46,836 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-29 10:01:48] 2025-10-29 09:00:46,836 | INFO     | ***************************************
[2025-10-29 10:01:48] 2025-10-29 09:00:46,836 | INFO     | 
[2025-10-29 10:01:48] 2025-10-29 09:00:46,836 | INFO     | architecture information:
[2025-10-29 10:01:48] 2025-10-29 09:00:46,837 | INFO     | executing command: cat /etc/os-release
[2025-10-29 10:01:48] 2025-10-29 09:00:46,851 | INFO     | cat /etc/os-release:
[2025-10-29 10:01:48] NAME="CentOS Linux"
[2025-10-29 10:01:48] VERSION="7 (Core)"
[2025-10-29 10:01:48] ID="centos"
[2025-10-29 10:01:48] ID_LIKE="rhel fedora"
[2025-10-29 10:01:48] VERSION_ID="7"
[2025-10-29 10:01:48] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-29 10:01:48] ANSI_COLOR="0;31"
[2025-10-29 10:01:48] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-29 10:01:48] HOME_URL="https://www.centos.org/"
[2025-10-29 10:01:48] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-29 10:01:48] 
[2025-10-29 10:01:48] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-29 10:01:48] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-29 10:01:48] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-29 10:01:48] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-29 10:01:48] 
[2025-10-29 10:01:48] 2025-10-29 09:00:46,851 | INFO     | ***************************************
[2025-10-29 10:01:48] 2025-10-29 09:00:47,354 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-10-29 10:01:48] 2025-10-29 09:00:47,372 | INFO     | sufficient remaining disk space (330741841920 B)
[2025-10-29 10:01:48] 2025-10-29 09:00:47,373 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-29 10:01:48] 2025-10-29 09:00:47,373 | INFO     | current server update state: UPDATING_FINAL
[2025-10-29 10:01:48] 2025-10-29 09:00:47,373 | INFO     | update_server=False
[2025-10-29 10:01:48] 2025-10-29 09:00:47,373 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-29 10:01:48] 2025-10-29 09:00:47,373 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-29 10:01:48] 2025-10-29 09:00:47,393 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-10-29 10:01:48] 2025-10-29 09:00:47,393 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-10-29 10:01:48] 2025-10-29 09:00:47,393 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-29 10:01:48] 2025-10-29 09:00:47,393 | INFO     | will abort loop
[2025-10-29 10:01:48] 2025-10-29 09:00:48,012 | INFO     | all payload control threads have been joined
[2025-10-29 10:01:48] 2025-10-29 09:00:48,116 | INFO     | all data control threads have been joined
[2025-10-29 10:01:48] 2025-10-29 09:00:48,379 | INFO     | [job] retrieve thread has finished
[2025-10-29 10:01:48] 2025-10-29 09:00:48,399 | INFO     | [job] job monitor thread has finished
[2025-10-29 10:01:48] 2025-10-29 09:00:48,482 | INFO     | [payload] validate_pre thread has finished
[2025-10-29 10:01:48] 2025-10-29 09:00:48,671 | INFO     | all job control threads have been joined
[2025-10-29 10:01:48] 2025-10-29 09:00:48,688 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-29 10:01:48] 2025-10-29 09:00:48,808 | INFO     | [payload] execute_payloads thread has finished
[2025-10-29 10:01:48] 2025-10-29 09:00:48,864 | INFO     | [payload] validate_post thread has finished
[2025-10-29 10:01:48] 2025-10-29 09:00:48,992 | INFO     | [data] copytool_in thread has finished
[2025-10-29 10:01:48] 2025-10-29 09:00:49,015 | INFO     | [payload] control thread has finished
[2025-10-29 10:01:48] 2025-10-29 09:00:49,122 | INFO     | [data] control thread has finished
[2025-10-29 10:01:48] 2025-10-29 09:00:49,379 | INFO     | [data] copytool_out thread has finished
[2025-10-29 10:01:48] 2025-10-29 09:00:49,433 | INFO     | [payload] failed_post thread has finished
[2025-10-29 10:01:48] 2025-10-29 09:00:49,677 | INFO     | [job] control thread has finished
[2025-10-29 10:01:48] 2025-10-29 09:00:49,693 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-29 10:01:48] 2025-10-29 09:00:49,786 | INFO     | [job] validate thread has finished
[2025-10-29 10:01:48] 2025-10-29 09:00:49,877 | INFO     | [job] create_data_payload thread has finished
[2025-10-29 10:01:48] 2025-10-29 09:00:50,278 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-29 10:01:48] 2025-10-29 09:00:51,283 | INFO     | [job] queue monitor thread has finished
[2025-10-29 10:01:48] 2025-10-29 09:00:52,695 | INFO     | [data] queue_monitor thread has finished
[2025-10-29 10:01:48] 2025-10-29 09:01:17,724 | INFO     | PID=95064 has CPU usage=0.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-10-29 10:01:48] 2025-10-29 09:01:17,724 | INFO     | found 0 job(s) in 20 queues
[2025-10-29 10:01:48] 2025-10-29 09:01:17,724 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-29 10:01:48] 2025-10-29 09:01:17,724 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-29 10:01:48] 2025-10-29 09:01:41,956 | INFO     | [monitor] cgroup control has ended
[2025-10-29 10:01:48] 2025-10-29 09:01:42,868 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140239053666112)>', '<ExcThread(monitor, started 140238097725184)>']
[2025-10-29 10:01:48] 2025-10-29 09:01:43,863 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-29 10:01:48] 2025-10-29 09:01:43,863 | INFO     | [monitor] control thread has ended
[2025-10-29 10:01:48] 2025-10-29 09:01:47,893 | INFO     | all workflow threads have been joined
[2025-10-29 10:01:48] 2025-10-29 09:01:47,894 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-29 10:01:48] 2025-10-29 09:01:47,894 | INFO     | traces error code: 0
[2025-10-29 10:01:48] 2025-10-29 09:01:47,894 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-29 10:01:48] 2025-10-29 09:01:47,971 [wrapper] ==== pilot stdout END ====
[2025-10-29 10:01:48] 2025-10-29 09:01:47,975 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-29 10:01:48] 2025-10-29 09:01:47,979 [wrapper] pilotpid: 95064
[2025-10-29 10:01:48] 2025-10-29 09:01:47,983 [wrapper] Pilot exit status: 0
[2025-10-29 10:01:48] 2025-10-29 09:01:47,995 [wrapper] pandaids: 6864342361
[2025-10-29 10:01:48] 2025-10-29 09:01:48,019 [wrapper] cleanup supervisor_pilot   95070 95065
[2025-10-29 10:01:48] 2025-10-29 09:01:48,023 [wrapper] Test setup, not cleaning
[2025-10-29 10:01:48] 2025-10-29 09:01:48,027 [wrapper] apfmon messages muted
[2025-10-29 10:01:48] 2025-10-29 09:01:48,031 [wrapper] ==== wrapper stdout END ====
[2025-10-29 10:01:48] 2025-10-29 09:01:48,035 [wrapper] ==== wrapper stderr END ====
[2025-10-29 10:01:48]  *** Error codes and diagnostics ***
[2025-10-29 10:01:48]     "exeErrorCode": 65,
[2025-10-29 10:01:48]     "exeErrorDiag": "EVNTtoHITS got a SIGHUP signal (exit code 129); Logfile error in log.EVNTtoHITS: \"CoreDumpSvc   FATAL Caught fatal signal. Printing details to stdout.\"; Possible memory leak: 'pss' slope: 7668.88 KB/s",
[2025-10-29 10:01:48]     "pilotErrorCode": 1305,
[2025-10-29 10:01:48]     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: EVNTtoHITS got a SIGHUP signal (exit code 129); Logfile error in log.EVNTtoHITS: \"CoreDumpSvc   FATAL Caught fatal signal. Printing details to stdout.\"; Possib",
[2025-10-29 10:01:48]  *** Listing of results directory ***
[2025-10-29 10:01:48] total 213920
[2025-10-29 10:01:48] -rw-r--r-- 1 boinc boinc    557409 Oct 29 07:36 pilot3.tar.gz
[2025-10-29 10:01:48] -rwx------ 1 boinc boinc     36292 Oct 29 07:53 runpilot2-wrapper.sh
[2025-10-29 10:01:48] -rw-r--r-- 1 boinc boinc      5112 Oct 29 07:53 queuedata.json
[2025-10-29 10:01:48] -rw-r--r-- 1 boinc boinc       100 Oct 29 09:53 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-29 10:01:48] -rwxr-xr-x 1 boinc boinc      7986 Oct 29 09:53 run_atlas
[2025-10-29 10:01:48] -rw-r--r-- 1 boinc boinc       105 Oct 29 09:53 job.xml
[2025-10-29 10:01:48] -rw-r--r-- 2 boinc boinc 214654242 Oct 29 09:53 EVNT.47081487._000363.pool.root.1
[2025-10-29 10:01:48] drwxrwx--x 2 boinc boinc      4096 Oct 29 09:53 shared
[2025-10-29 10:01:48] -rw-r--r-- 2 boinc boinc    569670 Oct 29 09:53 input.tar.gz
[2025-10-29 10:01:48] -rw-r--r-- 2 boinc boinc     15120 Oct 29 09:53 start_atlas.sh
[2025-10-29 10:01:48] -rw-r--r-- 1 boinc boinc         0 Oct 29 09:53 boinc_setup_complete
[2025-10-29 10:01:48] -rw-r--r-- 1 boinc boinc      6378 Oct 29 09:53 init_data.xml
[2025-10-29 10:01:48] -rw-r--r-- 1 boinc boinc         0 Oct 29 09:53 boinc_lockfile
[2025-10-29 10:01:48] -rw-r--r-- 1 boinc boinc      2525 Oct 29 09:53 pandaJob.out
[2025-10-29 10:01:48] -rw------- 1 boinc boinc    979090 Oct 29 09:53 agis_schedconf.cvmfs.json
[2025-10-29 10:01:48] -rw------- 1 boinc boinc   1560632 Oct 29 09:53 agis_ddmendpoints.agis.ALL.json
[2025-10-29 10:01:48] drwx------ 5 boinc boinc      4096 Oct 29 09:53 pilot3
[2025-10-29 10:01:48] -rw-r--r-- 1 boinc boinc       526 Oct 29 09:58 boinc_task_state.xml
[2025-10-29 10:01:48] -rw------- 1 boinc boinc      1014 Oct 29 09:58 memory_monitor_summary.json
[2025-10-29 10:01:48] -rw------- 1 boinc boinc    127902 Oct 29 09:58 log.47081490._009313.job.log.tgz.1
[2025-10-29 10:01:48] -rw------- 1 boinc boinc        95 Oct 29 10:00 pilot_heartbeat.json
[2025-10-29 10:01:48] -rw------- 1 boinc boinc      9857 Oct 29 10:00 heartbeat.json
[2025-10-29 10:01:48] -rw-r--r-- 1 boinc boinc      8192 Oct 29 10:01 boinc_mmap_file
[2025-10-29 10:01:48] -rw-r--r-- 1 boinc boinc        24 Oct 29 10:01 wrapper_checkpoint.txt
[2025-10-29 10:01:48] -rw------- 1 boinc boinc      4936 Oct 29 10:01 pilotlog.txt
[2025-10-29 10:01:48] -rw------- 1 boinc boinc    116037 Oct 29 10:01 log.47081490._009313.job.log.1
[2025-10-29 10:01:48] -rw------- 1 boinc boinc       188 Oct 29 10:01 output.list
[2025-10-29 10:01:48] -rw-r--r-- 1 boinc boinc       620 Oct 29 10:01 runtime_log
[2025-10-29 10:01:48] -rw------- 1 boinc boinc    266240 Oct 29 10:01 result.tar.gz
[2025-10-29 10:01:48] -rw-r--r-- 1 boinc boinc      8634 Oct 29 10:01 runtime_log.err
[2025-10-29 10:01:48] -rw------- 1 boinc boinc       652 Oct 29 10:01 3SKNDmrEFY8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmFCGODmS4BPmm.diag
[2025-10-29 10:01:48] -rw-r--r-- 1 boinc boinc     22556 Oct 29 10:01 stderr.txt
[2025-10-29 10:01:48] No HITS result produced
[2025-10-29 10:01:48]  *** Contents of shared directory: ***
[2025-10-29 10:01:48] total 210464
[2025-10-29 10:01:48] -rw-r--r-- 2 boinc boinc 214654242 Oct 29 09:53 ATLAS.root_0
[2025-10-29 10:01:48] -rw-r--r-- 2 boinc boinc    569670 Oct 29 09:53 input.tar.gz
[2025-10-29 10:01:48] -rw-r--r-- 2 boinc boinc     15120 Oct 29 09:53 start_atlas.sh
[2025-10-29 10:01:48] -rw------- 1 boinc boinc    266240 Oct 29 10:01 result.tar.gz
10:01:50 (91270): run_atlas exited; CPU time 161.526486
10:01:50 (91270): called boinc_finish(0)

</stderr_txt>
]]>

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