Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
03:11:29 (863303): wrapper (7.7.26015): starting
03:11:29 (863303): wrapper: running run_atlas (--nthreads 8)
[2025-10-29 03:11:29] Arguments: --nthreads 8
[2025-10-29 03:11:29] Threads: 8
[2025-10-29 03:11:29] Checking for CVMFS
[2025-10-29 03:11:30] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-29 03:11:30] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-29 03:11:30] Running cvmfs_config stat atlas.cern.ch
[2025-10-29 03:11:30] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-29 03:11:30] 2.13.2.0 1756961 118591 248380 152256 3 64 16787390 32935937 4667 16776704 0 188047249 99.736 132951664 29103 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-10-29 03:11:30] CVMFS is ok
[2025-10-29 03:11:30] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-29 03:11:30] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-29 03:11:30] Further information can be found at the LHC@home message board.
[2025-10-29 03:11:30] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-29 03:11:30] Checking for apptainer binary...
[2025-10-29 03:11:30] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-29 03:11:30] Running /usr/bin/apptainer --version
[2025-10-29 03:11:30] apptainer version 1.4.3-1.el9
[2025-10-29 03:11:30] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-29 03:11:30] c-5-5.aglt2.org
[2025-10-29 03:11:30] apptainer works
[2025-10-29 03:11:30] Set ATHENA_PROC_NUMBER=8
[2025-10-29 03:11:30] Set ATHENA_CORE_NUMBER=8
[2025-10-29 03:11:30] Starting ATLAS job with PandaID=6864230247
[2025-10-29 03:11:30] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-29 04:40:56]  *** The last 200 lines of the pilot log: ***
[2025-10-29 04:40:56]  workdir=None
[2025-10-29 04:40:56] ]
[2025-10-29 04:40:56] 2025-10-29 08:39:46,280 | INFO     | transferring file log.47081490._006213.job.log.tgz.1 from /tmp/boinchome/slots/0/PanDA_Pilot-6864230247/log.47081490._006213.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-10-29 04:40:56] 2025-10-29 08:39:46,280 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/0/PanDA_Pilot-6864230247/log.47081490._006213.job.log.tgz.1 /tmp/boinchome/slots/0/log.47081490._006213.job
[2025-10-29 04:40:56] 2025-10-29 08:39:46,297 | INFO     | adding to output.list: log.47081490._006213.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/77/09/log.47081490._006213.job.log.tg
[2025-10-29 04:40:56] 2025-10-29 08:39:46,298 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-10-29 04:40:56] 2025-10-29 08:39:46,298 | INFO     | summary of transferred files:
[2025-10-29 04:40:56] 2025-10-29 08:39:46,298 | INFO     |  -- lfn=log.47081490._006213.job.log.tgz.1, status_code=0, status=transferred
[2025-10-29 04:40:56] 2025-10-29 08:39:46,298 | INFO     | stage-out finished correctly
[2025-10-29 04:40:56] 2025-10-29 08:39:46,960 | INFO     | monitor loop #393: job 0:6864230247 is in state 'finished'
[2025-10-29 04:40:56] 2025-10-29 08:39:46,961 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-29 04:40:56] 2025-10-29 08:39:47,879 | INFO     | time since job start (5286s) is within the limit (172800.0s)
[2025-10-29 04:40:56] 2025-10-29 08:39:49,464 | INFO     | monitor loop #394: job 0:6864230247 is in state 'finished'
[2025-10-29 04:40:56] 2025-10-29 08:39:49,464 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-29 04:40:56] 2025-10-29 08:39:49,872 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-10-29 04:40:56] 2025-10-29 08:39:49,888 | INFO     | time since job start (5288s) is within the limit (172800.0s)
[2025-10-29 04:40:56] 2025-10-29 08:39:51,099 | INFO     | job 6864230247 has state=finished
[2025-10-29 04:40:56] 2025-10-29 08:39:51,100 | INFO     | preparing for final server update for job 6864230247 in state='finished'
[2025-10-29 04:40:56] 2025-10-29 08:39:51,101 | INFO     | this job has now completed (state=finished)
[2025-10-29 04:40:56] 2025-10-29 08:39:51,101 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-10-29 04:40:56] 2025-10-29 08:39:51,101 | INFO     | log transfer has been attempted: DONE
[2025-10-29 04:40:56] 2025-10-29 08:39:51,101 | INFO     | job 6864230247 has finished - writing final server update
[2025-10-29 04:40:56] 2025-10-29 08:39:51,102 | INFO     | total number of processed events: 400 (read)
[2025-10-29 04:40:56] 2025-10-29 08:39:51,102 | INFO     | executing command: lscpu
[2025-10-29 04:40:56] 2025-10-29 08:39:51,154 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-10-29 04:40:56] 2025-10-29 08:39:51,907 | INFO     | time since job start (5290s) is within the limit (172800.0s)
[2025-10-29 04:40:56] 2025-10-29 08:39:51,966 | INFO     | monitor loop #395: job 0:6864230247 is in state 'finished'
[2025-10-29 04:40:56] 2025-10-29 08:39:51,967 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-29 04:40:56] 2025-10-29 08:39:53,244 | INFO     | PID=866999 has CPU usage=9.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-10-29 04:40:56] 2025-10-29 08:39:53,244 | INFO     | .. there are 6 such processes running
[2025-10-29 04:40:56] 2025-10-29 08:39:54,245 | INFO     | time since job start (5293s) is within the limit (172800.0s)
[2025-10-29 04:40:56] 2025-10-29 08:39:54,469 | INFO     | monitor loop #396: job 0:6864230247 is in state 'finished'
[2025-10-29 04:40:56] 2025-10-29 08:39:54,470 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-29 04:40:56] 2025-10-29 08:39:54,673 | INFO     | CPU arch script returned: x86-64-v3
[2025-10-29 04:40:56] 2025-10-29 08:39:54,680 | INFO     | found 20 cores (10 cores per socket, 2 sockets) HT, CPU MHz: 2720.132175
[2025-10-29 04:40:56] 2025-10-29 08:39:54,687 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6864230247/memory_monitor_summary.json (trf name=prmon)
[2025-10-29 04:40:56] 2025-10-29 08:39:54,688 | INFO     | extracted standard info from prmon json
[2025-10-29 04:40:56] 2025-10-29 08:39:54,688 | INFO     | extracted standard memory fields from prmon json
[2025-10-29 04:40:56] 2025-10-29 08:39:54,688 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-29 04:40:56] 2025-10-29 08:39:54,688 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-29 04:40:56] 2025-10-29 08:39:54,689 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-29 04:40:56] 2025-10-29 08:39:54,691 | INFO     | fitting pss+swap vs Time
[2025-10-29 04:40:56] 2025-10-29 08:39:54,691 | INFO     | sum of square deviations: 158737860.0
[2025-10-29 04:40:56] 2025-10-29 08:39:54,692 | INFO     | sum of deviations: 291685835.00000024
[2025-10-29 04:40:56] 2025-10-29 08:39:54,692 | INFO     | mean x: 1761724639.5
[2025-10-29 04:40:56] 2025-10-29 08:39:54,692 | INFO     | mean y: 2189634.425
[2025-10-29 04:40:56] 2025-10-29 08:39:54,692 | INFO     | -- intersect: -3235035073.7361903
[2025-10-29 04:40:56] 2025-10-29 08:39:54,692 | INFO     | intersect: -3235035073.7361903
[2025-10-29 04:40:56] 2025-10-29 08:39:54,692 | INFO     | chi2: 0.07382711593763142
[2025-10-29 04:40:56] 2025-10-29 08:39:54,692 | INFO     | -- intersect: -3235035073.7361903
[2025-10-29 04:40:56] 2025-10-29 08:39:54,693 | INFO     | current memory leak: 1.84 B/s (using 80 data points, chi2=0.07)
[2025-10-29 04:40:56] 2025-10-29 08:39:54,693 | INFO     | could have reported an average CPU frequency of 2673 MHz (6 samples)
[2025-10-29 04:40:56] 2025-10-29 08:39:54,693 | INFO     | ..............................
[2025-10-29 04:40:56] 2025-10-29 08:39:54,693 | INFO     | . Timing measurements:
[2025-10-29 04:40:56] 2025-10-29 08:39:54,693 | INFO     | . get job = 0 s
[2025-10-29 04:40:56] 2025-10-29 08:39:54,694 | INFO     | . initial setup = 2 s
[2025-10-29 04:40:56] 2025-10-29 08:39:54,694 | INFO     | . payload setup = 5 s
[2025-10-29 04:40:56] 2025-10-29 08:39:54,694 | INFO     | . stage-in = 0 s
[2025-10-29 04:40:56] 2025-10-29 08:39:54,694 | INFO     | . payload execution = 5260 s
[2025-10-29 04:40:56] 2025-10-29 08:39:54,694 | INFO     | . stage-out = 0 s
[2025-10-29 04:40:56] 2025-10-29 08:39:54,694 | INFO     | . log creation = 0 s
[2025-10-29 04:40:56] 2025-10-29 08:39:54,694 | INFO     | ..............................
[2025-10-29 04:40:56] 2025-10-29 08:39:54,882 | INFO     | 
[2025-10-29 04:40:56] 2025-10-29 08:39:54,883 | INFO     | job summary report
[2025-10-29 04:40:56] 2025-10-29 08:39:54,883 | INFO     | --------------------------------------------------
[2025-10-29 04:40:56] 2025-10-29 08:39:54,883 | INFO     | PanDA job id: 6864230247
[2025-10-29 04:40:56] 2025-10-29 08:39:54,883 | INFO     | task id: 47081490
[2025-10-29 04:40:56] 2025-10-29 08:39:54,883 | INFO     | errors: (none)
[2025-10-29 04:40:56] 2025-10-29 08:39:54,883 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-29 04:40:56] 2025-10-29 08:39:54,883 | INFO     | pilot state: finished 
[2025-10-29 04:40:56] 2025-10-29 08:39:54,883 | INFO     | transexitcode: 0
[2025-10-29 04:40:56] 2025-10-29 08:39:54,883 | INFO     | exeerrorcode: 0
[2025-10-29 04:40:56] 2025-10-29 08:39:54,884 | INFO     | exeerrordiag: 
[2025-10-29 04:40:56] 2025-10-29 08:39:54,884 | INFO     | exitcode: 0
[2025-10-29 04:40:56] 2025-10-29 08:39:54,884 | INFO     | exitmsg: OK
[2025-10-29 04:40:56] 2025-10-29 08:39:54,884 | INFO     | cpuconsumptiontime: 38689 s
[2025-10-29 04:40:56] 2025-10-29 08:39:54,884 | INFO     | nevents: 400
[2025-10-29 04:40:56] 2025-10-29 08:39:54,884 | INFO     | neventsw: 0
[2025-10-29 04:40:56] 2025-10-29 08:39:54,884 | INFO     | pid: 873454
[2025-10-29 04:40:56] 2025-10-29 08:39:54,884 | INFO     | pgrp: 873454
[2025-10-29 04:40:56] 2025-10-29 08:39:54,884 | INFO     | corecount: 8
[2025-10-29 04:40:56] 2025-10-29 08:39:54,885 | INFO     | event service: False
[2025-10-29 04:40:56] 2025-10-29 08:39:54,885 | INFO     | sizes: {0: 2348768, 1: 2348910, 4: 2349172, 11: 2349200, 5269: 2375756, 5270: 2384754, 5274: 2384938, 5279: 2385132}
[2025-10-29 04:40:56] 2025-10-29 08:39:54,885 | INFO     | --------------------------------------------------
[2025-10-29 04:40:56] 2025-10-29 08:39:54,885 | INFO     | 
[2025-10-29 04:40:56] 2025-10-29 08:39:54,885 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-10-29 04:40:56] 2025-10-29 08:39:54,902 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-29 04:40:56] 2025-10-29 08:39:54,902 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-29 04:40:56] 2025-10-29 08:39:54,902 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-29 04:40:56] 2025-10-29 08:39:54,903 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-29 04:40:56] 2025-10-29 08:39:54,903 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-29 04:40:56] 2025-10-29 08:39:54,903 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-29 04:40:56] 2025-10-29 08:39:54,903 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-29 04:40:56] 2025-10-29 08:39:54,903 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-29 04:40:56] 2025-10-29 08:39:54,903 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-29 04:40:56] 2025-10-29 08:39:54,903 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-29 04:40:56] 2025-10-29 08:39:54,903 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-29 04:40:56] 2025-10-29 08:39:54,903 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-29 04:40:56] 2025-10-29 08:39:54,904 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-29 04:40:56] 2025-10-29 08:39:54,904 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-29 04:40:56] 2025-10-29 08:39:54,904 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-29 04:40:56] 2025-10-29 08:39:54,904 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-29 04:40:56] 2025-10-29 08:39:54,904 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-29 04:40:56] 2025-10-29 08:39:54,904 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-29 04:40:56] 2025-10-29 08:39:54,904 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-29 04:40:56] 2025-10-29 08:39:54,904 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-29 04:40:56] 2025-10-29 08:39:54,905 | INFO     | job 6864230247 has completed (purged errors)
[2025-10-29 04:40:56] 2025-10-29 08:39:54,905 | INFO     | overall cleanup function is called
[2025-10-29 04:40:56] 2025-10-29 08:39:55,913 | INFO     | --- collectZombieJob: --- 10, [873454]
[2025-10-29 04:40:56] 2025-10-29 08:39:55,913 | INFO     | zombie collector waiting for pid 873454
[2025-10-29 04:40:56] 2025-10-29 08:39:55,914 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-29 04:40:56] 2025-10-29 08:39:55,914 | INFO     | collected zombie processes
[2025-10-29 04:40:56] 2025-10-29 08:39:55,914 | INFO     | will attempt to kill all subprocesses of pid=873454
[2025-10-29 04:40:56] 2025-10-29 08:39:56,173 | INFO     | process IDs to be killed: [873454] (in reverse order)
[2025-10-29 04:40:56] 2025-10-29 08:39:56,246 | WARNING  | found no corresponding commands to process id(s)
[2025-10-29 04:40:56] 2025-10-29 08:39:56,247 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-29 04:40:56] 2025-10-29 08:39:56,255 | INFO     | did not find any defunct processes belonging to 873454
[2025-10-29 04:40:56] 2025-10-29 08:39:56,262 | INFO     | did not find any defunct processes belonging to 873454
[2025-10-29 04:40:56] 2025-10-29 08:39:56,262 | INFO     | ready for new job
[2025-10-29 04:40:56] 2025-10-29 08:39:56,263 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-29 04:40:56] 2025-10-29 08:39:56,264 | INFO     | ***************************************
[2025-10-29 04:40:56] 2025-10-29 08:39:56,265 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-29 04:40:56] 2025-10-29 08:39:56,265 | INFO     | ***************************************
[2025-10-29 04:40:56] 2025-10-29 08:39:56,265 | INFO     | 
[2025-10-29 04:40:56] 2025-10-29 08:39:56,278 | INFO     | architecture information:
[2025-10-29 04:40:56] 2025-10-29 08:39:56,278 | INFO     | executing command: cat /etc/os-release
[2025-10-29 04:40:56] 2025-10-29 08:39:56,290 | INFO     | cat /etc/os-release:
[2025-10-29 04:40:56] NAME="CentOS Linux"
[2025-10-29 04:40:56] VERSION="7 (Core)"
[2025-10-29 04:40:56] ID="centos"
[2025-10-29 04:40:56] ID_LIKE="rhel fedora"
[2025-10-29 04:40:56] VERSION_ID="7"
[2025-10-29 04:40:56] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-29 04:40:56] ANSI_COLOR="0;31"
[2025-10-29 04:40:56] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-29 04:40:56] HOME_URL="https://www.centos.org/"
[2025-10-29 04:40:56] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-29 04:40:56] 
[2025-10-29 04:40:56] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-29 04:40:56] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-29 04:40:56] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-29 04:40:56] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-29 04:40:56] 
[2025-10-29 04:40:56] 2025-10-29 08:39:56,290 | INFO     | ***************************************
[2025-10-29 04:40:56] 2025-10-29 08:39:56,792 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-10-29 04:40:56] 2025-10-29 08:39:56,805 | INFO     | sufficient remaining disk space (74358718464 B)
[2025-10-29 04:40:56] 2025-10-29 08:39:56,806 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-29 04:40:56] 2025-10-29 08:39:56,806 | INFO     | current server update state: UPDATING_FINAL
[2025-10-29 04:40:56] 2025-10-29 08:39:56,806 | INFO     | update_server=False
[2025-10-29 04:40:56] 2025-10-29 08:39:56,806 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-29 04:40:56] 2025-10-29 08:39:56,807 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-29 04:40:56] 2025-10-29 08:39:56,846 | INFO     | all job control threads have been joined
[2025-10-29 04:40:56] 2025-10-29 08:39:56,851 | INFO     | all data control threads have been joined
[2025-10-29 04:40:56] 2025-10-29 08:39:56,916 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-29 04:40:56] 2025-10-29 08:39:56,973 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-10-29 04:40:56] 2025-10-29 08:39:56,973 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-10-29 04:40:56] 2025-10-29 08:39:56,973 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-29 04:40:56] 2025-10-29 08:39:56,973 | INFO     | will abort loop
[2025-10-29 04:40:56] 2025-10-29 08:39:57,458 | INFO     | all payload control threads have been joined
[2025-10-29 04:40:56] 2025-10-29 08:39:57,807 | INFO     | [job] retrieve thread has finished
[2025-10-29 04:40:56] 2025-10-29 08:39:57,811 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-29 04:40:56] 2025-10-29 08:39:57,851 | INFO     | [job] control thread has finished
[2025-10-29 04:40:56] 2025-10-29 08:39:57,856 | INFO     | [data] control thread has finished
[2025-10-29 04:40:56] 2025-10-29 08:39:57,979 | INFO     | [job] job monitor thread has finished
[2025-10-29 04:40:56] 2025-10-29 08:39:58,123 | INFO     | [job] create_data_payload thread has finished
[2025-10-29 04:40:56] 2025-10-29 08:39:58,208 | INFO     | [payload] validate_pre thread has finished
[2025-10-29 04:40:56] 2025-10-29 08:39:58,404 | INFO     | [payload] execute_payloads thread has finished
[2025-10-29 04:40:56] 2025-10-29 08:39:58,464 | INFO     | [payload] control thread has finished
[2025-10-29 04:40:56] 2025-10-29 08:39:58,644 | INFO     | [payload] failed_post thread has finished
[2025-10-29 04:40:56] 2025-10-29 08:39:58,817 | INFO     | [job] queue monitor thread has finished
[2025-10-29 04:40:56] 2025-10-29 08:39:58,818 | INFO     | [data] copytool_in thread has finished
[2025-10-29 04:40:56] 2025-10-29 08:39:58,922 | INFO     | [data] copytool_out thread has finished
[2025-10-29 04:40:56] 2025-10-29 08:39:59,066 | INFO     | [job] validate thread has finished
[2025-10-29 04:40:56] 2025-10-29 08:39:59,303 | INFO     | [payload] validate_post thread has finished
[2025-10-29 04:40:56] 2025-10-29 08:40:00,812 | INFO     | [data] queue_monitor thread has finished
[2025-10-29 04:40:56] 2025-10-29 08:40:07,776 | INFO     | job.realtimelogging is not enabled
[2025-10-29 04:40:56] 2025-10-29 08:40:08,781 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-29 04:40:56] 2025-10-29 08:40:27,631 | INFO     | PID=866999 has CPU usage=2.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-10-29 04:40:56] 2025-10-29 08:40:27,631 | INFO     | .. there are 6 such processes running
[2025-10-29 04:40:56] 2025-10-29 08:40:27,632 | INFO     | found 0 job(s) in 20 queues
[2025-10-29 04:40:56] 2025-10-29 08:40:27,632 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-29 04:40:56] 2025-10-29 08:40:27,632 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-29 04:40:56] 2025-10-29 08:40:49,041 | INFO     | [monitor] cgroup control has ended
[2025-10-29 04:40:56] 2025-10-29 08:40:51,110 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140284022896448)>', '<ExcThread(monitor, started 140283513640704)>']
[2025-10-29 04:40:56] 2025-10-29 08:40:51,730 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-29 04:40:56] 2025-10-29 08:40:51,730 | INFO     | [monitor] control thread has ended
[2025-10-29 04:40:56] 2025-10-29 08:40:56,136 | INFO     | all workflow threads have been joined
[2025-10-29 04:40:56] 2025-10-29 08:40:56,136 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-29 04:40:56] 2025-10-29 08:40:56,137 | INFO     | traces error code: 0
[2025-10-29 04:40:56] 2025-10-29 08:40:56,137 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-29 04:40:56] 2025-10-29 08:40:56,247 [wrapper] ==== pilot stdout END ====
[2025-10-29 04:40:56] 2025-10-29 08:40:56,249 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-29 04:40:56] 2025-10-29 08:40:56,252 [wrapper] pilotpid: 866999
[2025-10-29 04:40:56] 2025-10-29 08:40:56,254 [wrapper] Pilot exit status: 0
[2025-10-29 04:40:56] 2025-10-29 08:40:56,264 [wrapper] pandaids: 6864230247
[2025-10-29 04:40:56] 2025-10-29 08:40:56,316 [wrapper] cleanup supervisor_pilot 1103150 867000
[2025-10-29 04:40:56] 2025-10-29 08:40:56,319 [wrapper] Test setup, not cleaning
[2025-10-29 04:40:56] 2025-10-29 08:40:56,321 [wrapper] apfmon messages muted
[2025-10-29 04:40:56] 2025-10-29 08:40:56,324 [wrapper] ==== wrapper stdout END ====
[2025-10-29 04:40:56] 2025-10-29 08:40:56,326 [wrapper] ==== wrapper stderr END ====
[2025-10-29 04:40:56]  *** Error codes and diagnostics ***
[2025-10-29 04:40:56]     "exeErrorCode": 0,
[2025-10-29 04:40:56]     "exeErrorDiag": "",
[2025-10-29 04:40:56]     "pilotErrorCode": 0,
[2025-10-29 04:40:56]     "pilotErrorDiag": "",
[2025-10-29 04:40:56]  *** Listing of results directory ***
[2025-10-29 04:40:56] total 387492
[2025-10-29 04:40:56] -rwx------. 1 boincer umatlas     36292 Oct 29 01:27 runpilot2-wrapper.sh
[2025-10-29 04:40:56] -rw-r--r--. 1 boincer umatlas    557409 Oct 29 01:27 pilot3.tar.gz
[2025-10-29 04:40:56] -rw-r--r--. 1 boincer umatlas      5112 Oct 29 01:27 queuedata.json
[2025-10-29 04:40:56] -rw-r--r--. 1 boincer umatlas       100 Oct 29 03:11 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-29 04:40:56] -rwxr-xr-x. 1 boincer umatlas      7986 Oct 29 03:11 run_atlas
[2025-10-29 04:40:56] -rw-r--r--. 1 boincer umatlas       105 Oct 29 03:11 job.xml
[2025-10-29 04:40:56] -rw-r--r--. 2 boincer umatlas 214222903 Oct 29 03:11 EVNT.47081487._000239.pool.root.1
[2025-10-29 04:40:56] -rw-r--r--. 2 boincer umatlas     15120 Oct 29 03:11 start_atlas.sh
[2025-10-29 04:40:56] drwxrwx--x. 2 boincer umatlas      4096 Oct 29 03:11 shared
[2025-10-29 04:40:56] -rw-r--r--. 2 boincer umatlas    569672 Oct 29 03:11 input.tar.gz
[2025-10-29 04:40:56] -rw-r--r--. 1 boincer umatlas         0 Oct 29 03:11 boinc_lockfile
[2025-10-29 04:40:56] -rw-r--r--. 1 boincer umatlas      2524 Oct 29 03:11 pandaJob.out
[2025-10-29 04:40:56] -rw-------. 1 boincer umatlas    979126 Oct 29 03:11 agis_schedconf.cvmfs.json
[2025-10-29 04:40:56] -rw-------. 1 boincer umatlas   1560632 Oct 29 03:11 agis_ddmendpoints.agis.ALL.json
[2025-10-29 04:40:56] drwx------. 5 boincer umatlas      4096 Oct 29 03:11 pilot3
[2025-10-29 04:40:56] -rw-r--r--. 1 boincer umatlas       529 Oct 29 04:39 boinc_task_state.xml
[2025-10-29 04:40:56] -rw-------. 1 boincer umatlas 176455208 Oct 29 04:39 HITS.47081490._006213.pool.root.1
[2025-10-29 04:40:56] -rw-------. 1 boincer umatlas      1033 Oct 29 04:39 memory_monitor_summary.json
[2025-10-29 04:40:56] -rw-------. 1 boincer umatlas    326369 Oct 29 04:39 log.47081490._006213.job.log.tgz.1
[2025-10-29 04:40:56] -rw-------. 1 boincer umatlas      7806 Oct 29 04:39 heartbeat.json
[2025-10-29 04:40:56] -rw-r--r--. 1 boincer umatlas      6659 Oct 29 04:40 init_data.xml
[2025-10-29 04:40:56] -rw-------. 1 boincer umatlas        95 Oct 29 04:40 pilot_heartbeat.json
[2025-10-29 04:40:56] -rw-r--r--. 1 boincer umatlas        27 Oct 29 04:40 wrapper_checkpoint.txt
[2025-10-29 04:40:56] -rw-------. 1 boincer umatlas      5080 Oct 29 04:40 pilotlog.txt
[2025-10-29 04:40:56] -rw-------. 1 boincer umatlas    775981 Oct 29 04:40 log.47081490._006213.job.log.1
[2025-10-29 04:40:56] -rw-------. 1 boincer umatlas       357 Oct 29 04:40 output.list
[2025-10-29 04:40:56] -rw-r--r--. 1 boincer umatlas       620 Oct 29 04:40 runtime_log
[2025-10-29 04:40:56] -rw-------. 1 boincer umatlas   1126400 Oct 29 04:40 result.tar.gz
[2025-10-29 04:40:56] -rw-------. 1 boincer umatlas       649 Oct 29 04:40 SvCMDmEtDY8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmrgFODmlVd7Xm.diag
[2025-10-29 04:40:56] -rw-r--r--. 1 boincer umatlas      8688 Oct 29 04:40 runtime_log.err
[2025-10-29 04:40:56] -rw-r--r--. 1 boincer umatlas      8192 Oct 29 04:40 boinc_mmap_file
[2025-10-29 04:40:56] -rw-r--r--. 1 boincer umatlas     22309 Oct 29 04:40 stderr.txt
[2025-10-29 04:40:56] HITS file was successfully produced:
[2025-10-29 04:40:56] -rw-------. 1 boincer umatlas 176455208 Oct 29 04:39 shared/HITS.pool.root.1
[2025-10-29 04:40:56]  *** Contents of shared directory: ***
[2025-10-29 04:40:56] total 383204
[2025-10-29 04:40:56] -rw-r--r--. 2 boincer umatlas 214222903 Oct 29 03:11 ATLAS.root_0
[2025-10-29 04:40:56] -rw-r--r--. 2 boincer umatlas     15120 Oct 29 03:11 start_atlas.sh
[2025-10-29 04:40:56] -rw-r--r--. 2 boincer umatlas    569672 Oct 29 03:11 input.tar.gz
[2025-10-29 04:40:56] -rw-------. 1 boincer umatlas 176455208 Oct 29 04:39 HITS.pool.root.1
[2025-10-29 04:40:56] -rw-------. 1 boincer umatlas   1126400 Oct 29 04:40 result.tar.gz
04:40:58 (863303): run_atlas exited; CPU time 38853.610387
04:40:58 (863303): called boinc_finish(0)

</stderr_txt>
]]>

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