Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<message>
process exited with code 195 (0xc3, -61)</message>
<stderr_txt>
10:26:40 (2589831): wrapper (7.7.26015): starting
10:26:40 (2589831): wrapper: running run_atlas (--nthreads 4)
[2025-10-29 10:26:40] Arguments: --nthreads 4
[2025-10-29 10:26:40] Threads: 4
[2025-10-29 10:26:40] Checking for CVMFS
[2025-10-29 10:26:40] No cvmfs_config command found, will try listing directly
[2025-10-29 10:26:40] CVMFS is ok
[2025-10-29 10:26:40] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-29 10:26:40] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-29 10:26:40] Further information can be found at the LHC@home message board.
[2025-10-29 10:26:40] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-29 10:26:40] Checking for apptainer binary...
[2025-10-29 10:26:40] which: no apptainer in ((null))
[2025-10-29 10:26:40] apptainer is not installed, using version from CVMFS
[2025-10-29 10:26:40] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-29 10:26:40] WARNING: Environment variable TMPDIR already has value [/scratch/boinc/var/slot36/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut01.grid.cesnet.cz
[2025-10-29 10:26:40] apptainer works
[2025-10-29 10:26:40] Set ATHENA_PROC_NUMBER=4
[2025-10-29 10:26:40] Set ATHENA_CORE_NUMBER=4
[2025-10-29 10:26:40] Starting ATLAS job with PandaID=6864230423
[2025-10-29 10:26:40] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/scratch/boinc/var/slot36/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
08:49:07 (3203636): wrapper (7.7.26015): starting
08:49:07 (3203636): wrapper: running run_atlas (--nthreads 4)
[2025-11-01 08:49:07] Arguments: --nthreads 4
[2025-11-01 08:49:07] Threads: 4
[2025-11-01 08:49:07] This job has been restarted, cleaning up previous attempt
[2025-11-01 08:49:07] Checking for CVMFS
[2025-11-01 08:49:07] No cvmfs_config command found, will try listing directly
[2025-11-01 08:49:07] CVMFS is ok
[2025-11-01 08:49:07] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-01 08:49:07] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-01 08:49:07] Further information can be found at the LHC@home message board.
[2025-11-01 08:49:07] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-01 08:49:07] Checking for apptainer binary...
[2025-11-01 08:49:07] which: no apptainer in ((null))
[2025-11-01 08:49:07] apptainer is not installed, using version from CVMFS
[2025-11-01 08:49:07] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-01 08:49:07] WARNING: Environment variable TMPDIR already has value [/scratch/boinc/var/slot36/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut01.grid.cesnet.cz
[2025-11-01 08:49:07] apptainer works
[2025-11-01 08:49:07] Set ATHENA_PROC_NUMBER=4
[2025-11-01 08:49:07] Set ATHENA_CORE_NUMBER=4
[2025-11-01 08:49:07] Starting ATLAS job with PandaID=6864230423
[2025-11-01 08:49:07] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/scratch/boinc/var/slot36/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-01 08:55:59] Job failed
[2025-11-01 08:55:59] WARNING: Environment variable TMPDIR already has value [/scratch/boinc/var/slot36/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment
[2025-11-01 08:55:59] ++ pwd
[2025-11-01 08:55:59] + export RUNTIME_CONFIG_DIR=/scratch/boinc/var/slot36/slots/0/
[2025-11-01 08:55:59] + RUNTIME_CONFIG_DIR=/scratch/boinc/var/slot36/slots/0/
[2025-11-01 08:55:59] + mv ATLAS.root_0 EVNT.47081487._000243.pool.root.1
[2025-11-01 08:55:59] mv: 'ATLAS.root_0' and 'EVNT.47081487._000243.pool.root.1' are the same file
[2025-11-01 08:55:59] + tar --strip-components=5 -xvf input.tar.gz
[2025-11-01 08:55:59] + umask 077
[2025-11-01 08:55:59] ++ date +%s
[2025-11-01 08:55:59] + ACCOUNTING_STARTTIME=1761983348
[2025-11-01 08:55:59] + echo 'Detecting resource accounting method available for the job.'
[2025-11-01 08:55:59] Detecting resource accounting method available for the job.
[2025-11-01 08:55:59] + JOB_ACCOUNTING=
[2025-11-01 08:55:59] + command -v arc-job-cgroup
[2025-11-01 08:55:59] + '[' -z '' ']'
[2025-11-01 08:55:59] + GNU_TIME=/usr/bin/time
[2025-11-01 08:55:59] + echo 'Looking for /usr/bin/time tool for accounting measurements'
[2025-11-01 08:55:59] Looking for /usr/bin/time tool for accounting measurements
[2025-11-01 08:55:59] + '[' '!' -z /usr/bin/time ']'
[2025-11-01 08:55:59] + /usr/bin/time --version
[2025-11-01 08:55:59] + echo 'GNU time found and will be used for job accounting.'
[2025-11-01 08:55:59] GNU time found and will be used for job accounting.
[2025-11-01 08:55:59] + JOB_ACCOUNTING=gnutime
[2025-11-01 08:55:59] + '[' -z gnutime ']'
[2025-11-01 08:55:59] + export PANDA_JSID=harvester-CERN_central_ACTA
[2025-11-01 08:55:59] + PANDA_JSID=harvester-CERN_central_ACTA
[2025-11-01 08:55:59] + export GTAG=http://aipanda403.cern.ch/data/jobs/2025-10-29/BOINC_MCORE/6864230423.out
[2025-11-01 08:55:59] + GTAG=http://aipanda403.cern.ch/data/jobs/2025-10-29/BOINC_MCORE/6864230423.out
[2025-11-01 08:55:59] + export PILOT_NOKILL=YES
[2025-11-01 08:55:59] + PILOT_NOKILL=YES
[2025-11-01 08:55:59] + export GRID_GLOBAL_JOBID=LywLDmnuDY8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmrhFODmkA8cRo
[2025-11-01 08:55:59] + GRID_GLOBAL_JOBID=LywLDmnuDY8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmrhFODmkA8cRo
[2025-11-01 08:55:59] + export GRID_GLOBAL_JOBURL=https://arc-boinc-01.cern.ch:443/arex/LywLDmnuDY8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmrhFODmkA8cRo
[2025-11-01 08:55:59] + GRID_GLOBAL_JOBURL=https://arc-boinc-01.cern.ch:443/arex/LywLDmnuDY8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmrhFODmkA8cRo
[2025-11-01 08:55:59] + export GRID_GLOBAL_JOBINTERFACE=org.nordugrid.arcrest
[2025-11-01 08:55:59] + GRID_GLOBAL_JOBINTERFACE=org.nordugrid.arcrest
[2025-11-01 08:55:59] + export GRID_GLOBAL_JOBHOST=arc-boinc-01.cern.ch
[2025-11-01 08:55:59] + GRID_GLOBAL_JOBHOST=arc-boinc-01.cern.ch
[2025-11-01 08:55:59] ++ pwd
[2025-11-01 08:55:59] + RUNTIME_JOB_DIR=/scratch/boinc/var/slot36/slots/0
[2025-11-01 08:55:59] + RUNTIME_JOB_STDIN=/dev/null
[2025-11-01 08:55:59] ++ pwd
[2025-11-01 08:55:59] + RUNTIME_JOB_STDOUT=/scratch/boinc/var/slot36/slots/0/log.47081490._006310.job.log.1
[2025-11-01 08:55:59] ++ pwd
[2025-11-01 08:55:59] + RUNTIME_JOB_STDERR=/scratch/boinc/var/slot36/slots/0/log.47081490._006310.job.log.1
[2025-11-01 08:55:59] ++ pwd
[2025-11-01 08:55:59] + RUNTIME_JOB_DIAG=/scratch/boinc/var/slot36/slots/0.diag
[2025-11-01 08:55:59] + '[' '!' -z '' ']'
[2025-11-01 08:55:59] + RUNTIME_LOCAL_SCRATCH_DIR=
[2025-11-01 08:55:59] + RUNTIME_LOCAL_SCRATCH_MOVE_TOOL=mv
[2025-11-01 08:55:59] + RUNTIME_FRONTEND_SEES_NODE=
[2025-11-01 08:55:59] + RUNTIME_NODE_SEES_FRONTEND=yes
[2025-11-01 08:55:59] + '[' '!' -z '' ']'
[2025-11-01 08:55:59] + '[' -z yes ']'
[2025-11-01 08:55:59] ++ pwd
[2025-11-01 08:55:59] + RUNTIME_JOB_DIAG=/scratch/boinc/var/slot36/slots/0/LywLDmnuDY8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmrhFODmkA8cRo.diag
[2025-11-01 08:55:59] + runtimeenvironments=
[2025-11-01 08:55:59] + runtimeenvironments='APPS/HEP/ATLAS-SITE;'
[2025-11-01 08:55:59] + RTE_function_0 1
[2025-11-01 08:55:59] + export PROJECT_ROOT=/boincdata/boinc/project/lhcathome
[2025-11-01 08:55:59] + PROJECT_ROOT=/boincdata/boinc/project/lhcathome
[2025-11-01 08:55:59] + export BOINC_APP=ATLAS
[2025-11-01 08:55:59] + BOINC_APP=ATLAS
[2025-11-01 08:55:59] + export WU_TEMPLATE=templates/ATLAS_IN_DYNAMIC
[2025-11-01 08:55:59] + WU_TEMPLATE=templates/ATLAS_IN_DYNAMIC
[2025-11-01 08:55:59] + export RESULT_TEMPLATE=templates/ATLAS_OUT_2
[2025-11-01 08:55:59] + RESULT_TEMPLATE=templates/ATLAS_OUT_2
[2025-11-01 08:55:59] + '[' -z 1 ']'
[2025-11-01 08:55:59] + '[' 1 == 1 ']'
[2025-11-01 08:55:59] + shift
[2025-11-01 08:55:59] + export SITE_NAME=BOINC
[2025-11-01 08:55:59] + SITE_NAME=BOINC
[2025-11-01 08:55:59] + export ATLAS_LOCAL_AREA=/scratch/boinc/var/slot36/slots/0/
[2025-11-01 08:55:59] + ATLAS_LOCAL_AREA=/scratch/boinc/var/slot36/slots/0/
[2025-11-01 08:55:59] + '[' 0 -ne 0 ']'
[2025-11-01 08:55:59] + echo 'runtimeenvironments=APPS/HEP/ATLAS-SITE;'
[2025-11-01 08:55:59] + '[' -f /etc/os-release ']'
[2025-11-01 08:55:59] +++ cat /etc/os-release
[2025-11-01 08:55:59] ++ eval 'NAME="CentOS' 'Linux"' 'VERSION="7' '(Core)"' 'ID="centos"' 'ID_LIKE="rhel' 'fedora"' 'VERSION_ID="7"' 'PRETTY_NAME="CentOS' Linux 7 '(Core)"' 'ANSI_COLOR="0;31"' 'CPE_NAME="cpe:/o:centos:centos:7"' 'HOME_URL="https://www.centos.org/"' 'BUG_REPORT_URL="https://bugs.centos.org/"' 'CENTOS_MANTISBT_PROJECT="CentOS-7"' 'CENTOS_MANTISBT_PROJECT_VERSION="7"' 'REDHAT_SUPPORT_PRODUCT="centos"' 'REDHAT_SUPPORT_PRODUCT_VERSION="7"'
[2025-11-01 08:55:59] +++ NAME='CentOS Linux'
[2025-11-01 08:55:59] +++ VERSION='7 (Core)'
[2025-11-01 08:55:59] +++ ID=centos
[2025-11-01 08:55:59] +++ ID_LIKE='rhel fedora'
[2025-11-01 08:55:59] +++ VERSION_ID=7
[2025-11-01 08:55:59] +++ PRETTY_NAME='CentOS Linux 7 (Core)'
[2025-11-01 08:55:59] +++ ANSI_COLOR='0;31'
[2025-11-01 08:55:59] +++ CPE_NAME=cpe:/o:centos:centos:7
[2025-11-01 08:55:59] +++ HOME_URL=https://www.centos.org/
[2025-11-01 08:55:59] +++ BUG_REPORT_URL=https://bugs.centos.org/
[2025-11-01 08:55:59] +++ CENTOS_MANTISBT_PROJECT=CentOS-7
[2025-11-01 08:55:59] +++ CENTOS_MANTISBT_PROJECT_VERSION=7
[2025-11-01 08:55:59] +++ REDHAT_SUPPORT_PRODUCT=centos
[2025-11-01 08:55:59] +++ REDHAT_SUPPORT_PRODUCT_VERSION=7
[2025-11-01 08:55:59] ++ echo 'CentOS Linux 7 (Core)'
[2025-11-01 08:55:59] + SYSTEM_SOFTWARE='CentOS Linux 7 (Core)'
[2025-11-01 08:55:59] + '[' -n 'CentOS Linux 7 (Core)' ']'
[2025-11-01 08:55:59] + echo 'systemsoftware=CentOS Linux 7 (Core)'
[2025-11-01 08:55:59] + HOME=/scratch/boinc/var/slot36/slots/0
[2025-11-01 08:55:59] + export HOME
[2025-11-01 08:55:59] + cd /scratch/boinc/var/slot36/slots/0
[2025-11-01 08:55:59] + '[' '!' -z '' ']'
[2025-11-01 08:55:59] + '[' -z '' ']'
[2025-11-01 08:55:59] ++ /bin/hostname -f
[2025-11-01 08:55:59] + nodename=skurut01.grid.cesnet.cz
[2025-11-01 08:55:59] + echo nodename=skurut01.grid.cesnet.cz
[2025-11-01 08:55:59] + echo Processors=2
[2025-11-01 08:55:59] + echo Nodecount=1
[2025-11-01 08:55:59] + echo Benchmark=HEPSPEC:1.0
[2025-11-01 08:55:59] + executable=./runpilot2-wrapper.sh
[2025-11-01 08:55:59] + '[' '!' -f ./runpilot2-wrapper.sh ']'
[2025-11-01 08:55:59] ++ dd if=./runpilot2-wrapper.sh count=1
[2025-11-01 08:55:59] ++ head -n 1
[2025-11-01 08:55:59] ++ tr -d '\0'
[2025-11-01 08:55:59] + line1='#!/bin/bash'
[2025-11-01 08:55:59] ++ echo '#!/bin/bash'
[2025-11-01 08:55:59] ++ sed -n 's/^#! *//p'
[2025-11-01 08:55:59] + shebang=/bin/bash
[2025-11-01 08:55:59] ++ echo /bin/bash
[2025-11-01 08:55:59] ++ awk '{print $1}'
[2025-11-01 08:55:59] + interpreter=/bin/bash
[2025-11-01 08:55:59] + '[' /bin/bash = /usr/bin/env ']'
[2025-11-01 08:55:59] + '[' x/bin/bash = x ']'
[2025-11-01 08:55:59] + type /bin/bash
[2025-11-01 08:55:59] + '[' xgnutime = xgnutime ']'
[2025-11-01 08:55:59] + /usr/bin/time -o /scratch/boinc/var/slot36/slots/0/LywLDmnuDY8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmrhFODmkA8cRo.diag -a -f 'WallTime=%es\nKernelTime=%Ss\nUserTime=%Us\nCPUUsage=%P\nMaxResidentMemory=%MkB\nAverageResidentMemory=%tkB\nAverageTotalMemory=%KkB\nAverageUnsharedMemory=%DkB\nAverageUnsharedStack=%pkB\nAverageSharedMemory=%XkB\nPageSize=%ZB\nMajorPageFaults=%F\nMinorPageFaults=%R\nSwaps=%W\nForcedSwitches=%c\nWaitSwitches=%w\nInputs=%I\nOutputs=%O\nSocketReceived=%r\nSocketSent=%s\nSignals=%k\n' ./runpilot2-wrapper.sh -q BOINC_MCORE -j managed --pilot-user ATLAS --harvester-submit-mode PUSH -w generic --job-type managed --resource-type MCORE --pilotversion 3.11.0.29 -z -t --piloturl local --mute --container
[2025-11-01 08:55:59] + RESULT=2
[2025-11-01 08:55:59] + sed -i -e /nodename=/d /scratch/boinc/var/slot36/slots/0/LywLDmnuDY8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmrhFODmkA8cRo.diag
[2025-11-01 08:55:59] ++ grep domain_name init_data.xml
[2025-11-01 08:55:59] ++ awk -F '>' '{print $2}'
[2025-11-01 08:55:59] ++ awk -F '<' '{print $1}'
[2025-11-01 08:55:59] ++ sed -e 's# #_#g'
[2025-11-01 08:55:59] + hostname=skurut01.grid.cesnet.cz
[2025-11-01 08:55:59] ++ grep user_name init_data.xml
[2025-11-01 08:55:59] ++ awk -F '>' '{print $2}'
[2025-11-01 08:55:59] ++ awk -F '<' '{print $1}'
[2025-11-01 08:55:59] ++ sed -e 's# #_#g'
[2025-11-01 08:55:59] + username=praguelcg2
[2025-11-01 08:55:59] + nodename=praguelcg2@skurut01.grid.cesnet.cz
[2025-11-01 08:55:59] + echo nodename=praguelcg2@skurut01.grid.cesnet.cz
[2025-11-01 08:55:59] + '[' -n 4 ']'
[2025-11-01 08:55:59] + sed -i -e s/Processors=1/Processors=4/ /scratch/boinc/var/slot36/slots/0/LywLDmnuDY8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmrhFODmkA8cRo.diag
[2025-11-01 08:55:59] + echo exitcode=2
[2025-11-01 08:55:59] + runtimeenvironments=
[2025-11-01 08:55:59] + runtimeenvironments='APPS/HEP/ATLAS-SITE;'
[2025-11-01 08:55:59] + RTE_function_0 2
[2025-11-01 08:55:59] + export PROJECT_ROOT=/boincdata/boinc/project/lhcathome
[2025-11-01 08:55:59] + PROJECT_ROOT=/boincdata/boinc/project/lhcathome
[2025-11-01 08:55:59] + export BOINC_APP=ATLAS
[2025-11-01 08:55:59] + BOINC_APP=ATLAS
[2025-11-01 08:55:59] + export WU_TEMPLATE=templates/ATLAS_IN_DYNAMIC
[2025-11-01 08:55:59] + WU_TEMPLATE=templates/ATLAS_IN_DYNAMIC
[2025-11-01 08:55:59] + export RESULT_TEMPLATE=templates/ATLAS_OUT_2
[2025-11-01 08:55:59] + RESULT_TEMPLATE=templates/ATLAS_OUT_2
[2025-11-01 08:55:59] + '[' -z 2 ']'
[2025-11-01 08:55:59] + '[' 2 == 1 ']'
[2025-11-01 08:55:59] + '[' 0 -ne 0 ']'
[2025-11-01 08:55:59] + echo 'zip all output files'
[2025-11-01 08:55:59] + flist='*.diag '
[2025-11-01 08:55:59] + for f in ./heartbeat.json ./output.list ./log.47081490._006310.job.log.1 ./log.47081490._006310.job.log.1 ./gmlog/
[2025-11-01 08:55:59] + '[' -e ./heartbeat.json ']'
[2025-11-01 08:55:59] + flist='*.diag  ./heartbeat.json'
[2025-11-01 08:55:59] + for f in ./heartbeat.json ./output.list ./log.47081490._006310.job.log.1 ./log.47081490._006310.job.log.1 ./gmlog/
[2025-11-01 08:55:59] + '[' -e ./output.list ']'
[2025-11-01 08:55:59] + for f in ./heartbeat.json ./output.list ./log.47081490._006310.job.log.1 ./log.47081490._006310.job.log.1 ./gmlog/
[2025-11-01 08:55:59] + '[' -e ./log.47081490._006310.job.log.1 ']'
[2025-11-01 08:55:59] + flist='*.diag  ./heartbeat.json ./log.47081490._006310.job.log.1'
[2025-11-01 08:55:59] + for f in ./heartbeat.json ./output.list ./log.47081490._006310.job.log.1 ./log.47081490._006310.job.log.1 ./gmlog/
[2025-11-01 08:55:59] + '[' -e ./log.47081490._006310.job.log.1 ']'
[2025-11-01 08:55:59] + flist='*.diag  ./heartbeat.json ./log.47081490._006310.job.log.1 ./log.47081490._006310.job.log.1'
[2025-11-01 08:55:59] + for f in ./heartbeat.json ./output.list ./log.47081490._006310.job.log.1 ./log.47081490._006310.job.log.1 ./gmlog/
[2025-11-01 08:55:59] + '[' -e ./gmlog/ ']'
[2025-11-01 08:55:59] + '[' -f output.list ']'
[2025-11-01 08:55:59] + tar cvf result.tar.gz LywLDmnuDY8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmrhFODmkA8cRo.diag ./heartbeat.json ./log.47081490._006310.job.log.1 ./log.47081490._006310.job.log.1
[2025-11-01 08:55:59] + '[' xgnutime = xcgroup ']'
[2025-11-01 08:55:59] + '[' -n '' ']'
[2025-11-01 08:55:59] + '[' -n '' ']'
[2025-11-01 08:55:59] ++ date +%s
[2025-11-01 08:55:59] + ACCOUNTING_ENDTIME=1761983538
[2025-11-01 08:55:59] ++ date -d '1970-01-01 UTC 1761983348 seconds' +%Y%m%d%H%M%SZ
[2025-11-01 08:55:59] + echo LRMSStartTime=20251101084908Z
[2025-11-01 08:55:59] ++ date -d '1970-01-01 UTC 1761983538 seconds' +%Y%m%d%H%M%SZ
[2025-11-01 08:55:59] + echo LRMSEndTime=20251101085218Z
[2025-11-01 08:55:59] + echo walltime=190
[2025-11-01 08:55:59] + echo exitcode=2
[2025-11-01 08:55:59] + exit 2
[2025-11-01 08:55:59] ./log.47081490._006310.job.log.1
[2025-11-01 08:55:59] ./pilotlog.txt
[2025-11-01 08:55:59] ./runtime_log.err
[2025-11-01 08:55:59] ./PanDA_Pilot-6864230423/prmon.log
[2025-11-01 08:55:59] ./PanDA_Pilot-6864230423/pilotlog.txt
[2025-11-01 08:55:59] ./PanDA_Pilot-6864230423/PoolFileCatalog.xml
[2025-11-01 08:55:59] ./PanDA_Pilot-6864230423/log.EVNTtoHITS
[2025-11-01 08:55:59] ./pilot3/pilot/util/loggingsupport.py
[2025-11-01 08:55:59] ./pilot3/pilot/util/__pycache__/realtimelogger.cpython-39.pyc
[2025-11-01 08:55:59] ./pilot3/pilot/util/__pycache__/lokirealtimelogger.cpython-39.pyc
[2025-11-01 08:55:59] ./pilot3/pilot/util/__pycache__/loggingsupport.cpython-39.pyc
[2025-11-01 08:55:59] ./pilot3/pilot/util/realtimelogger.py
[2025-11-01 08:55:59] ./pilot3/pilot/util/lokirealtimelogger.py
[2025-11-01 08:55:59] ./runtime_log
09:19:31 (3238479): wrapper (7.7.26015): starting
09:19:31 (3238479): wrapper: running run_atlas (--nthreads 4)
[2025-11-01 09:19:31] Arguments: --nthreads 4
[2025-11-01 09:19:31] Threads: 4
[2025-11-01 09:19:31] This job has been restarted, cleaning up previous attempt
[2025-11-01 09:19:31] Checking for CVMFS
[2025-11-01 09:19:31] No cvmfs_config command found, will try listing directly
[2025-11-01 09:19:31] CVMFS is ok
[2025-11-01 09:19:31] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-01 09:19:31] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-01 09:19:31] Further information can be found at the LHC@home message board.
[2025-11-01 09:19:31] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-01 09:19:31] Checking for apptainer binary...
[2025-11-01 09:19:31] which: no apptainer in ((null))
[2025-11-01 09:19:31] apptainer is not installed, using version from CVMFS
[2025-11-01 09:19:31] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-01 09:19:31] WARNING: Environment variable TMPDIR already has value [/scratch/boinc/var/slot36/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut01.grid.cesnet.cz
[2025-11-01 09:19:31] apptainer works
[2025-11-01 09:19:31] Set ATHENA_PROC_NUMBER=4
[2025-11-01 09:19:31] Set ATHENA_CORE_NUMBER=4
[2025-11-01 09:19:31] Starting ATLAS job with PandaID=6864230423
[2025-11-01 09:19:31] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/scratch/boinc/var/slot36/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
16:12:24 (1252538): wrapper (7.7.26015): starting
16:12:24 (1252538): wrapper: running run_atlas (--nthreads 4)
[2025-11-04 16:12:24] Arguments: --nthreads 4
[2025-11-04 16:12:24] Threads: 4
[2025-11-04 16:12:24] This job has been restarted, cleaning up previous attempt
[2025-11-04 16:12:24] Checking for CVMFS
[2025-11-04 16:12:24] No cvmfs_config command found, will try listing directly
[2025-11-04 16:12:25] CVMFS is ok
[2025-11-04 16:12:25] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-04 16:12:25] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-04 16:12:25] Further information can be found at the LHC@home message board.
[2025-11-04 16:12:25] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-04 16:12:25] Checking for apptainer binary...
[2025-11-04 16:12:25] which: no apptainer in ((null))
[2025-11-04 16:12:25] apptainer is not installed, using version from CVMFS
[2025-11-04 16:12:25] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-04 16:12:25] WARNING: Environment variable TMPDIR already has value [/scratch/boinc/var/slot36/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut01.grid.cesnet.cz
[2025-11-04 16:12:25] apptainer works
[2025-11-04 16:12:25] Set ATHENA_PROC_NUMBER=4
[2025-11-04 16:12:25] Set ATHENA_CORE_NUMBER=4
[2025-11-04 16:12:25] Starting ATLAS job with PandaID=6864230423
[2025-11-04 16:12:25] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/scratch/boinc/var/slot36/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-04 16:17:46] Job failed
[2025-11-04 16:17:46] WARNING: Environment variable TMPDIR already has value [/scratch/boinc/var/slot36/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment
[2025-11-04 16:17:46] ++ pwd
[2025-11-04 16:17:46] + export RUNTIME_CONFIG_DIR=/scratch/boinc/var/slot36/slots/0/
[2025-11-04 16:17:46] + RUNTIME_CONFIG_DIR=/scratch/boinc/var/slot36/slots/0/
[2025-11-04 16:17:46] + mv ATLAS.root_0 EVNT.47081487._000243.pool.root.1
[2025-11-04 16:17:46] mv: 'ATLAS.root_0' and 'EVNT.47081487._000243.pool.root.1' are the same file
[2025-11-04 16:17:46] + tar --strip-components=5 -xvf input.tar.gz
[2025-11-04 16:17:46] + umask 077
[2025-11-04 16:17:46] ++ date +%s
[2025-11-04 16:17:46] + ACCOUNTING_STARTTIME=1762269146
[2025-11-04 16:17:46] + echo 'Detecting resource accounting method available for the job.'
[2025-11-04 16:17:46] Detecting resource accounting method available for the job.
[2025-11-04 16:17:46] + JOB_ACCOUNTING=
[2025-11-04 16:17:46] + command -v arc-job-cgroup
[2025-11-04 16:17:46] + '[' -z '' ']'
[2025-11-04 16:17:46] + GNU_TIME=/usr/bin/time
[2025-11-04 16:17:46] + echo 'Looking for /usr/bin/time tool for accounting measurements'
[2025-11-04 16:17:46] Looking for /usr/bin/time tool for accounting measurements
[2025-11-04 16:17:46] + '[' '!' -z /usr/bin/time ']'
[2025-11-04 16:17:46] + /usr/bin/time --version
[2025-11-04 16:17:46] + echo 'GNU time found and will be used for job accounting.'
[2025-11-04 16:17:46] GNU time found and will be used for job accounting.
[2025-11-04 16:17:46] + JOB_ACCOUNTING=gnutime
[2025-11-04 16:17:46] + '[' -z gnutime ']'
[2025-11-04 16:17:46] + export PANDA_JSID=harvester-CERN_central_ACTA
[2025-11-04 16:17:46] + PANDA_JSID=harvester-CERN_central_ACTA
[2025-11-04 16:17:46] + export GTAG=http://aipanda403.cern.ch/data/jobs/2025-10-29/BOINC_MCORE/6864230423.out
[2025-11-04 16:17:46] + GTAG=http://aipanda403.cern.ch/data/jobs/2025-10-29/BOINC_MCORE/6864230423.out
[2025-11-04 16:17:46] + export PILOT_NOKILL=YES
[2025-11-04 16:17:46] + PILOT_NOKILL=YES
[2025-11-04 16:17:46] + export GRID_GLOBAL_JOBID=LywLDmnuDY8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmrhFODmkA8cRo
[2025-11-04 16:17:46] + GRID_GLOBAL_JOBID=LywLDmnuDY8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmrhFODmkA8cRo
[2025-11-04 16:17:46] + export GRID_GLOBAL_JOBURL=https://arc-boinc-01.cern.ch:443/arex/LywLDmnuDY8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmrhFODmkA8cRo
[2025-11-04 16:17:46] + GRID_GLOBAL_JOBURL=https://arc-boinc-01.cern.ch:443/arex/LywLDmnuDY8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmrhFODmkA8cRo
[2025-11-04 16:17:46] + export GRID_GLOBAL_JOBINTERFACE=org.nordugrid.arcrest
[2025-11-04 16:17:46] + GRID_GLOBAL_JOBINTERFACE=org.nordugrid.arcrest
[2025-11-04 16:17:46] + export GRID_GLOBAL_JOBHOST=arc-boinc-01.cern.ch
[2025-11-04 16:17:46] + GRID_GLOBAL_JOBHOST=arc-boinc-01.cern.ch
[2025-11-04 16:17:46] ++ pwd
[2025-11-04 16:17:46] + RUNTIME_JOB_DIR=/scratch/boinc/var/slot36/slots/0
[2025-11-04 16:17:46] + RUNTIME_JOB_STDIN=/dev/null
[2025-11-04 16:17:46] ++ pwd
[2025-11-04 16:17:46] + RUNTIME_JOB_STDOUT=/scratch/boinc/var/slot36/slots/0/log.47081490._006310.job.log.1
[2025-11-04 16:17:46] ++ pwd
[2025-11-04 16:17:46] + RUNTIME_JOB_STDERR=/scratch/boinc/var/slot36/slots/0/log.47081490._006310.job.log.1
[2025-11-04 16:17:46] ++ pwd
[2025-11-04 16:17:46] + RUNTIME_JOB_DIAG=/scratch/boinc/var/slot36/slots/0.diag
[2025-11-04 16:17:46] + '[' '!' -z '' ']'
[2025-11-04 16:17:46] + RUNTIME_LOCAL_SCRATCH_DIR=
[2025-11-04 16:17:46] + RUNTIME_LOCAL_SCRATCH_MOVE_TOOL=mv
[2025-11-04 16:17:46] + RUNTIME_FRONTEND_SEES_NODE=
[2025-11-04 16:17:46] + RUNTIME_NODE_SEES_FRONTEND=yes
[2025-11-04 16:17:46] + '[' '!' -z '' ']'
[2025-11-04 16:17:46] + '[' -z yes ']'
[2025-11-04 16:17:46] ++ pwd
[2025-11-04 16:17:46] + RUNTIME_JOB_DIAG=/scratch/boinc/var/slot36/slots/0/LywLDmnuDY8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmrhFODmkA8cRo.diag
[2025-11-04 16:17:46] + runtimeenvironments=
[2025-11-04 16:17:46] + runtimeenvironments='APPS/HEP/ATLAS-SITE;'
[2025-11-04 16:17:46] + RTE_function_0 1
[2025-11-04 16:17:46] + export PROJECT_ROOT=/boincdata/boinc/project/lhcathome
[2025-11-04 16:17:46] + PROJECT_ROOT=/boincdata/boinc/project/lhcathome
[2025-11-04 16:17:46] + export BOINC_APP=ATLAS
[2025-11-04 16:17:46] + BOINC_APP=ATLAS
[2025-11-04 16:17:46] + export WU_TEMPLATE=templates/ATLAS_IN_DYNAMIC
[2025-11-04 16:17:46] + WU_TEMPLATE=templates/ATLAS_IN_DYNAMIC
[2025-11-04 16:17:46] + export RESULT_TEMPLATE=templates/ATLAS_OUT_2
[2025-11-04 16:17:46] + RESULT_TEMPLATE=templates/ATLAS_OUT_2
[2025-11-04 16:17:46] + '[' -z 1 ']'
[2025-11-04 16:17:46] + '[' 1 == 1 ']'
[2025-11-04 16:17:46] + shift
[2025-11-04 16:17:46] + export SITE_NAME=BOINC
[2025-11-04 16:17:46] + SITE_NAME=BOINC
[2025-11-04 16:17:46] + export ATLAS_LOCAL_AREA=/scratch/boinc/var/slot36/slots/0/
[2025-11-04 16:17:46] + ATLAS_LOCAL_AREA=/scratch/boinc/var/slot36/slots/0/
[2025-11-04 16:17:46] + '[' 0 -ne 0 ']'
[2025-11-04 16:17:46] + echo 'runtimeenvironments=APPS/HEP/ATLAS-SITE;'
[2025-11-04 16:17:46] + '[' -f /etc/os-release ']'
[2025-11-04 16:17:46] +++ cat /etc/os-release
[2025-11-04 16:17:46] ++ eval 'NAME="CentOS' 'Linux"' 'VERSION="7' '(Core)"' 'ID="centos"' 'ID_LIKE="rhel' 'fedora"' 'VERSION_ID="7"' 'PRETTY_NAME="CentOS' Linux 7 '(Core)"' 'ANSI_COLOR="0;31"' 'CPE_NAME="cpe:/o:centos:centos:7"' 'HOME_URL="https://www.centos.org/"' 'BUG_REPORT_URL="https://bugs.centos.org/"' 'CENTOS_MANTISBT_PROJECT="CentOS-7"' 'CENTOS_MANTISBT_PROJECT_VERSION="7"' 'REDHAT_SUPPORT_PRODUCT="centos"' 'REDHAT_SUPPORT_PRODUCT_VERSION="7"'
[2025-11-04 16:17:46] +++ NAME='CentOS Linux'
[2025-11-04 16:17:46] +++ VERSION='7 (Core)'
[2025-11-04 16:17:46] +++ ID=centos
[2025-11-04 16:17:46] +++ ID_LIKE='rhel fedora'
[2025-11-04 16:17:46] +++ VERSION_ID=7
[2025-11-04 16:17:46] +++ PRETTY_NAME='CentOS Linux 7 (Core)'
[2025-11-04 16:17:46] +++ ANSI_COLOR='0;31'
[2025-11-04 16:17:46] +++ CPE_NAME=cpe:/o:centos:centos:7
[2025-11-04 16:17:46] +++ HOME_URL=https://www.centos.org/
[2025-11-04 16:17:46] +++ BUG_REPORT_URL=https://bugs.centos.org/
[2025-11-04 16:17:46] +++ CENTOS_MANTISBT_PROJECT=CentOS-7
[2025-11-04 16:17:46] +++ CENTOS_MANTISBT_PROJECT_VERSION=7
[2025-11-04 16:17:46] +++ REDHAT_SUPPORT_PRODUCT=centos
[2025-11-04 16:17:46] +++ REDHAT_SUPPORT_PRODUCT_VERSION=7
[2025-11-04 16:17:46] ++ echo 'CentOS Linux 7 (Core)'
[2025-11-04 16:17:46] + SYSTEM_SOFTWARE='CentOS Linux 7 (Core)'
[2025-11-04 16:17:46] + '[' -n 'CentOS Linux 7 (Core)' ']'
[2025-11-04 16:17:46] + echo 'systemsoftware=CentOS Linux 7 (Core)'
[2025-11-04 16:17:46] + HOME=/scratch/boinc/var/slot36/slots/0
[2025-11-04 16:17:46] + export HOME
[2025-11-04 16:17:46] + cd /scratch/boinc/var/slot36/slots/0
[2025-11-04 16:17:46] + '[' '!' -z '' ']'
[2025-11-04 16:17:46] + '[' -z '' ']'
[2025-11-04 16:17:46] ++ /bin/hostname -f
[2025-11-04 16:17:46] + nodename=skurut01.grid.cesnet.cz
[2025-11-04 16:17:46] + echo nodename=skurut01.grid.cesnet.cz
[2025-11-04 16:17:46] + echo Processors=2
[2025-11-04 16:17:46] + echo Nodecount=1
[2025-11-04 16:17:46] + echo Benchmark=HEPSPEC:1.0
[2025-11-04 16:17:46] + executable=./runpilot2-wrapper.sh
[2025-11-04 16:17:46] + '[' '!' -f ./runpilot2-wrapper.sh ']'
[2025-11-04 16:17:46] ++ dd if=./runpilot2-wrapper.sh count=1
[2025-11-04 16:17:46] ++ head -n 1
[2025-11-04 16:17:46] ++ tr -d '\0'
[2025-11-04 16:17:46] + line1='#!/bin/bash'
[2025-11-04 16:17:46] ++ echo '#!/bin/bash'
[2025-11-04 16:17:46] ++ sed -n 's/^#! *//p'
[2025-11-04 16:17:46] + shebang=/bin/bash
[2025-11-04 16:17:46] ++ echo /bin/bash
[2025-11-04 16:17:46] ++ awk '{print $1}'
[2025-11-04 16:17:46] + interpreter=/bin/bash
[2025-11-04 16:17:46] + '[' /bin/bash = /usr/bin/env ']'
[2025-11-04 16:17:46] + '[' x/bin/bash = x ']'
[2025-11-04 16:17:46] + type /bin/bash
[2025-11-04 16:17:46] + '[' xgnutime = xgnutime ']'
[2025-11-04 16:17:46] + /usr/bin/time -o /scratch/boinc/var/slot36/slots/0/LywLDmnuDY8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmrhFODmkA8cRo.diag -a -f 'WallTime=%es\nKernelTime=%Ss\nUserTime=%Us\nCPUUsage=%P\nMaxResidentMemory=%MkB\nAverageResidentMemory=%tkB\nAverageTotalMemory=%KkB\nAverageUnsharedMemory=%DkB\nAverageUnsharedStack=%pkB\nAverageSharedMemory=%XkB\nPageSize=%ZB\nMajorPageFaults=%F\nMinorPageFaults=%R\nSwaps=%W\nForcedSwitches=%c\nWaitSwitches=%w\nInputs=%I\nOutputs=%O\nSocketReceived=%r\nSocketSent=%s\nSignals=%k\n' ./runpilot2-wrapper.sh -q BOINC_MCORE -j managed --pilot-user ATLAS --harvester-submit-mode PUSH -w generic --job-type managed --resource-type MCORE --pilotversion 3.11.0.29 -z -t --piloturl local --mute --container
[2025-11-04 16:17:46] + RESULT=2
[2025-11-04 16:17:46] + sed -i -e /nodename=/d /scratch/boinc/var/slot36/slots/0/LywLDmnuDY8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmrhFODmkA8cRo.diag
[2025-11-04 16:17:46] ++ grep domain_name init_data.xml
[2025-11-04 16:17:46] ++ awk -F '>' '{print $2}'
[2025-11-04 16:17:46] ++ awk -F '<' '{print $1}'
[2025-11-04 16:17:46] ++ sed -e 's# #_#g'
[2025-11-04 16:17:46] + hostname=skurut01.grid.cesnet.cz
[2025-11-04 16:17:46] ++ grep user_name init_data.xml
[2025-11-04 16:17:46] ++ awk -F '>' '{print $2}'
[2025-11-04 16:17:46] ++ awk -F '<' '{print $1}'
[2025-11-04 16:17:46] ++ sed -e 's# #_#g'
[2025-11-04 16:17:46] + username=praguelcg2
[2025-11-04 16:17:46] + nodename=praguelcg2@skurut01.grid.cesnet.cz
[2025-11-04 16:17:46] + echo nodename=praguelcg2@skurut01.grid.cesnet.cz
[2025-11-04 16:17:46] + '[' -n 4 ']'
[2025-11-04 16:17:46] + sed -i -e s/Processors=1/Processors=4/ /scratch/boinc/var/slot36/slots/0/LywLDmnuDY8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmrhFODmkA8cRo.diag
[2025-11-04 16:17:46] + echo exitcode=2
[2025-11-04 16:17:46] + runtimeenvironments=
[2025-11-04 16:17:46] + runtimeenvironments='APPS/HEP/ATLAS-SITE;'
[2025-11-04 16:17:46] + RTE_function_0 2
[2025-11-04 16:17:46] + export PROJECT_ROOT=/boincdata/boinc/project/lhcathome
[2025-11-04 16:17:46] + PROJECT_ROOT=/boincdata/boinc/project/lhcathome
[2025-11-04 16:17:46] + export BOINC_APP=ATLAS
[2025-11-04 16:17:46] + BOINC_APP=ATLAS
[2025-11-04 16:17:46] + export WU_TEMPLATE=templates/ATLAS_IN_DYNAMIC
[2025-11-04 16:17:46] + WU_TEMPLATE=templates/ATLAS_IN_DYNAMIC
[2025-11-04 16:17:46] + export RESULT_TEMPLATE=templates/ATLAS_OUT_2
[2025-11-04 16:17:46] + RESULT_TEMPLATE=templates/ATLAS_OUT_2
[2025-11-04 16:17:46] + '[' -z 2 ']'
[2025-11-04 16:17:46] + '[' 2 == 1 ']'
[2025-11-04 16:17:46] + '[' 0 -ne 0 ']'
[2025-11-04 16:17:46] + echo 'zip all output files'
[2025-11-04 16:17:46] + flist='*.diag '
[2025-11-04 16:17:46] + for f in ./heartbeat.json ./output.list ./log.47081490._006310.job.log.1 ./log.47081490._006310.job.log.1 ./gmlog/
[2025-11-04 16:17:46] + '[' -e ./heartbeat.json ']'
[2025-11-04 16:17:46] + flist='*.diag  ./heartbeat.json'
[2025-11-04 16:17:46] + for f in ./heartbeat.json ./output.list ./log.47081490._006310.job.log.1 ./log.47081490._006310.job.log.1 ./gmlog/
[2025-11-04 16:17:46] + '[' -e ./output.list ']'
[2025-11-04 16:17:46] + for f in ./heartbeat.json ./output.list ./log.47081490._006310.job.log.1 ./log.47081490._006310.job.log.1 ./gmlog/
[2025-11-04 16:17:46] + '[' -e ./log.47081490._006310.job.log.1 ']'
[2025-11-04 16:17:46] + flist='*.diag  ./heartbeat.json ./log.47081490._006310.job.log.1'
[2025-11-04 16:17:46] + for f in ./heartbeat.json ./output.list ./log.47081490._006310.job.log.1 ./log.47081490._006310.job.log.1 ./gmlog/
[2025-11-04 16:17:46] + '[' -e ./log.47081490._006310.job.log.1 ']'
[2025-11-04 16:17:46] + flist='*.diag  ./heartbeat.json ./log.47081490._006310.job.log.1 ./log.47081490._006310.job.log.1'
[2025-11-04 16:17:46] + for f in ./heartbeat.json ./output.list ./log.47081490._006310.job.log.1 ./log.47081490._006310.job.log.1 ./gmlog/
[2025-11-04 16:17:46] + '[' -e ./gmlog/ ']'
[2025-11-04 16:17:46] + '[' -f output.list ']'
[2025-11-04 16:17:46] + tar cvf result.tar.gz LywLDmnuDY8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmrhFODmkA8cRo.diag ./heartbeat.json ./log.47081490._006310.job.log.1 ./log.47081490._006310.job.log.1
[2025-11-04 16:17:46] + '[' xgnutime = xcgroup ']'
[2025-11-04 16:17:46] + '[' -n '' ']'
[2025-11-04 16:17:46] + '[' -n '' ']'
[2025-11-04 16:17:46] ++ date +%s
[2025-11-04 16:17:46] + ACCOUNTING_ENDTIME=1762269337
[2025-11-04 16:17:46] ++ date -d '1970-01-01 UTC 1762269146 seconds' +%Y%m%d%H%M%SZ
[2025-11-04 16:17:46] + echo LRMSStartTime=20251104161226Z
[2025-11-04 16:17:46] ++ date -d '1970-01-01 UTC 1762269337 seconds' +%Y%m%d%H%M%SZ
[2025-11-04 16:17:46] + echo LRMSEndTime=20251104161537Z
[2025-11-04 16:17:46] + echo walltime=191
[2025-11-04 16:17:46] + echo exitcode=2
[2025-11-04 16:17:46] + exit 2
[2025-11-04 16:17:46] ./log.47081490._006310.job.log.1
[2025-11-04 16:17:46] ./pilotlog.txt
[2025-11-04 16:17:46] ./runtime_log.err
[2025-11-04 16:17:46] ./PanDA_Pilot-6864230423/prmon.log
[2025-11-04 16:17:46] ./PanDA_Pilot-6864230423/pilotlog.txt
[2025-11-04 16:17:46] ./PanDA_Pilot-6864230423/PoolFileCatalog.xml
[2025-11-04 16:17:46] ./PanDA_Pilot-6864230423/log.EVNTtoHITS
[2025-11-04 16:17:46] ./pilot3/pilot/util/loggingsupport.py
[2025-11-04 16:17:46] ./pilot3/pilot/util/__pycache__/realtimelogger.cpython-39.pyc
[2025-11-04 16:17:46] ./pilot3/pilot/util/__pycache__/lokirealtimelogger.cpython-39.pyc
[2025-11-04 16:17:46] ./pilot3/pilot/util/__pycache__/loggingsupport.cpython-39.pyc
[2025-11-04 16:17:46] ./pilot3/pilot/util/realtimelogger.py
[2025-11-04 16:17:46] ./pilot3/pilot/util/lokirealtimelogger.py
[2025-11-04 16:17:46] ./runtime_log
16:37:41 (1898595): wrapper (7.7.26015): starting
16:37:41 (1898595): wrapper: running run_atlas (--nthreads 4)
[2025-11-05 16:37:41] Arguments: --nthreads 4
[2025-11-05 16:37:41] Threads: 4
[2025-11-05 16:37:41] This job has been restarted, cleaning up previous attempt
[2025-11-05 16:37:41] Checking for CVMFS
[2025-11-05 16:37:41] No cvmfs_config command found, will try listing directly
[2025-11-05 16:37:42] CVMFS is ok
[2025-11-05 16:37:42] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-05 16:37:42] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-05 16:37:42] Further information can be found at the LHC@home message board.
[2025-11-05 16:37:42] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-05 16:37:42] Checking for apptainer binary...
[2025-11-05 16:37:42] which: no apptainer in ((null))
[2025-11-05 16:37:42] apptainer is not installed, using version from CVMFS
[2025-11-05 16:37:42] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-05 16:37:42] WARNING: Environment variable TMPDIR already has value [/scratch/boinc/var/slot36/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut01.grid.cesnet.cz
[2025-11-05 16:37:42] apptainer works
[2025-11-05 16:37:42] Set ATHENA_PROC_NUMBER=4
[2025-11-05 16:37:42] Set ATHENA_CORE_NUMBER=4
[2025-11-05 16:37:42] Starting ATLAS job with PandaID=6864230423
[2025-11-05 16:37:42] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/scratch/boinc/var/slot36/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-05 16:41:12] Job failed
[2025-11-05 16:41:12] WARNING: Environment variable TMPDIR already has value [/scratch/boinc/var/slot36/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment
[2025-11-05 16:41:12] ++ pwd
[2025-11-05 16:41:12] + export RUNTIME_CONFIG_DIR=/scratch/boinc/var/slot36/slots/0/
[2025-11-05 16:41:12] + RUNTIME_CONFIG_DIR=/scratch/boinc/var/slot36/slots/0/
[2025-11-05 16:41:12] + mv ATLAS.root_0 EVNT.47081487._000243.pool.root.1
[2025-11-05 16:41:12] mv: 'ATLAS.root_0' and 'EVNT.47081487._000243.pool.root.1' are the same file
[2025-11-05 16:41:12] + tar --strip-components=5 -xvf input.tar.gz
[2025-11-05 16:41:12] + umask 077
[2025-11-05 16:41:12] ++ date +%s
[2025-11-05 16:41:12] + ACCOUNTING_STARTTIME=1762357062
[2025-11-05 16:41:12] + echo 'Detecting resource accounting method available for the job.'
[2025-11-05 16:41:12] Detecting resource accounting method available for the job.
[2025-11-05 16:41:12] + JOB_ACCOUNTING=
[2025-11-05 16:41:12] + command -v arc-job-cgroup
[2025-11-05 16:41:12] + '[' -z '' ']'
[2025-11-05 16:41:12] + GNU_TIME=/usr/bin/time
[2025-11-05 16:41:12] + echo 'Looking for /usr/bin/time tool for accounting measurements'
[2025-11-05 16:41:12] Looking for /usr/bin/time tool for accounting measurements
[2025-11-05 16:41:12] + '[' '!' -z /usr/bin/time ']'
[2025-11-05 16:41:12] + /usr/bin/time --version
[2025-11-05 16:41:12] + echo 'GNU time found and will be used for job accounting.'
[2025-11-05 16:41:12] GNU time found and will be used for job accounting.
[2025-11-05 16:41:12] + JOB_ACCOUNTING=gnutime
[2025-11-05 16:41:12] + '[' -z gnutime ']'
[2025-11-05 16:41:12] + export PANDA_JSID=harvester-CERN_central_ACTA
[2025-11-05 16:41:12] + PANDA_JSID=harvester-CERN_central_ACTA
[2025-11-05 16:41:12] + export GTAG=http://aipanda403.cern.ch/data/jobs/2025-10-29/BOINC_MCORE/6864230423.out
[2025-11-05 16:41:12] + GTAG=http://aipanda403.cern.ch/data/jobs/2025-10-29/BOINC_MCORE/6864230423.out
[2025-11-05 16:41:12] + export PILOT_NOKILL=YES
[2025-11-05 16:41:12] + PILOT_NOKILL=YES
[2025-11-05 16:41:12] + export GRID_GLOBAL_JOBID=LywLDmnuDY8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmrhFODmkA8cRo
[2025-11-05 16:41:12] + GRID_GLOBAL_JOBID=LywLDmnuDY8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmrhFODmkA8cRo
[2025-11-05 16:41:12] + export GRID_GLOBAL_JOBURL=https://arc-boinc-01.cern.ch:443/arex/LywLDmnuDY8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmrhFODmkA8cRo
[2025-11-05 16:41:12] + GRID_GLOBAL_JOBURL=https://arc-boinc-01.cern.ch:443/arex/LywLDmnuDY8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmrhFODmkA8cRo
[2025-11-05 16:41:12] + export GRID_GLOBAL_JOBINTERFACE=org.nordugrid.arcrest
[2025-11-05 16:41:12] + GRID_GLOBAL_JOBINTERFACE=org.nordugrid.arcrest
[2025-11-05 16:41:12] + export GRID_GLOBAL_JOBHOST=arc-boinc-01.cern.ch
[2025-11-05 16:41:12] + GRID_GLOBAL_JOBHOST=arc-boinc-01.cern.ch
[2025-11-05 16:41:12] ++ pwd
[2025-11-05 16:41:12] + RUNTIME_JOB_DIR=/scratch/boinc/var/slot36/slots/0
[2025-11-05 16:41:12] + RUNTIME_JOB_STDIN=/dev/null
[2025-11-05 16:41:12] ++ pwd
[2025-11-05 16:41:12] + RUNTIME_JOB_STDOUT=/scratch/boinc/var/slot36/slots/0/log.47081490._006310.job.log.1
[2025-11-05 16:41:12] ++ pwd
[2025-11-05 16:41:12] + RUNTIME_JOB_STDERR=/scratch/boinc/var/slot36/slots/0/log.47081490._006310.job.log.1
[2025-11-05 16:41:12] ++ pwd
[2025-11-05 16:41:12] + RUNTIME_JOB_DIAG=/scratch/boinc/var/slot36/slots/0.diag
[2025-11-05 16:41:12] + '[' '!' -z '' ']'
[2025-11-05 16:41:12] + RUNTIME_LOCAL_SCRATCH_DIR=
[2025-11-05 16:41:12] + RUNTIME_LOCAL_SCRATCH_MOVE_TOOL=mv
[2025-11-05 16:41:12] + RUNTIME_FRONTEND_SEES_NODE=
[2025-11-05 16:41:12] + RUNTIME_NODE_SEES_FRONTEND=yes
[2025-11-05 16:41:12] + '[' '!' -z '' ']'
[2025-11-05 16:41:12] + '[' -z yes ']'
[2025-11-05 16:41:12] ++ pwd
[2025-11-05 16:41:12] + RUNTIME_JOB_DIAG=/scratch/boinc/var/slot36/slots/0/LywLDmnuDY8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmrhFODmkA8cRo.diag
[2025-11-05 16:41:12] + runtimeenvironments=
[2025-11-05 16:41:12] + runtimeenvironments='APPS/HEP/ATLAS-SITE;'
[2025-11-05 16:41:12] + RTE_function_0 1
[2025-11-05 16:41:12] + export PROJECT_ROOT=/boincdata/boinc/project/lhcathome
[2025-11-05 16:41:12] + PROJECT_ROOT=/boincdata/boinc/project/lhcathome
[2025-11-05 16:41:12] + export BOINC_APP=ATLAS
[2025-11-05 16:41:12] + BOINC_APP=ATLAS
[2025-11-05 16:41:12] + export WU_TEMPLATE=templates/ATLAS_IN_DYNAMIC
[2025-11-05 16:41:12] + WU_TEMPLATE=templates/ATLAS_IN_DYNAMIC
[2025-11-05 16:41:12] + export RESULT_TEMPLATE=templates/ATLAS_OUT_2
[2025-11-05 16:41:12] + RESULT_TEMPLATE=templates/ATLAS_OUT_2
[2025-11-05 16:41:12] + '[' -z 1 ']'
[2025-11-05 16:41:12] + '[' 1 == 1 ']'
[2025-11-05 16:41:12] + shift
[2025-11-05 16:41:12] + export SITE_NAME=BOINC
[2025-11-05 16:41:12] + SITE_NAME=BOINC
[2025-11-05 16:41:12] + export ATLAS_LOCAL_AREA=/scratch/boinc/var/slot36/slots/0/
[2025-11-05 16:41:12] + ATLAS_LOCAL_AREA=/scratch/boinc/var/slot36/slots/0/
[2025-11-05 16:41:12] + '[' 0 -ne 0 ']'
[2025-11-05 16:41:12] + echo 'runtimeenvironments=APPS/HEP/ATLAS-SITE;'
[2025-11-05 16:41:12] + '[' -f /etc/os-release ']'
[2025-11-05 16:41:12] +++ cat /etc/os-release
[2025-11-05 16:41:12] ++ eval 'NAME="CentOS' 'Linux"' 'VERSION="7' '(Core)"' 'ID="centos"' 'ID_LIKE="rhel' 'fedora"' 'VERSION_ID="7"' 'PRETTY_NAME="CentOS' Linux 7 '(Core)"' 'ANSI_COLOR="0;31"' 'CPE_NAME="cpe:/o:centos:centos:7"' 'HOME_URL="https://www.centos.org/"' 'BUG_REPORT_URL="https://bugs.centos.org/"' 'CENTOS_MANTISBT_PROJECT="CentOS-7"' 'CENTOS_MANTISBT_PROJECT_VERSION="7"' 'REDHAT_SUPPORT_PRODUCT="centos"' 'REDHAT_SUPPORT_PRODUCT_VERSION="7"'
[2025-11-05 16:41:12] +++ NAME='CentOS Linux'
[2025-11-05 16:41:12] +++ VERSION='7 (Core)'
[2025-11-05 16:41:12] +++ ID=centos
[2025-11-05 16:41:12] +++ ID_LIKE='rhel fedora'
[2025-11-05 16:41:12] +++ VERSION_ID=7
[2025-11-05 16:41:12] +++ PRETTY_NAME='CentOS Linux 7 (Core)'
[2025-11-05 16:41:12] +++ ANSI_COLOR='0;31'
[2025-11-05 16:41:12] +++ CPE_NAME=cpe:/o:centos:centos:7
[2025-11-05 16:41:12] +++ HOME_URL=https://www.centos.org/
[2025-11-05 16:41:12] +++ BUG_REPORT_URL=https://bugs.centos.org/
[2025-11-05 16:41:12] +++ CENTOS_MANTISBT_PROJECT=CentOS-7
[2025-11-05 16:41:12] +++ CENTOS_MANTISBT_PROJECT_VERSION=7
[2025-11-05 16:41:12] +++ REDHAT_SUPPORT_PRODUCT=centos
[2025-11-05 16:41:12] +++ REDHAT_SUPPORT_PRODUCT_VERSION=7
[2025-11-05 16:41:12] ++ echo 'CentOS Linux 7 (Core)'
[2025-11-05 16:41:12] + SYSTEM_SOFTWARE='CentOS Linux 7 (Core)'
[2025-11-05 16:41:12] + '[' -n 'CentOS Linux 7 (Core)' ']'
[2025-11-05 16:41:12] + echo 'systemsoftware=CentOS Linux 7 (Core)'
[2025-11-05 16:41:12] + HOME=/scratch/boinc/var/slot36/slots/0
[2025-11-05 16:41:12] + export HOME
[2025-11-05 16:41:12] + cd /scratch/boinc/var/slot36/slots/0
[2025-11-05 16:41:12] + '[' '!' -z '' ']'
[2025-11-05 16:41:12] + '[' -z '' ']'
[2025-11-05 16:41:12] ++ /bin/hostname -f
[2025-11-05 16:41:12] + nodename=skurut01.grid.cesnet.cz
[2025-11-05 16:41:12] + echo nodename=skurut01.grid.cesnet.cz
[2025-11-05 16:41:12] + echo Processors=2
[2025-11-05 16:41:12] + echo Nodecount=1
[2025-11-05 16:41:12] + echo Benchmark=HEPSPEC:1.0
[2025-11-05 16:41:12] + executable=./runpilot2-wrapper.sh
[2025-11-05 16:41:12] + '[' '!' -f ./runpilot2-wrapper.sh ']'
[2025-11-05 16:41:12] ++ dd if=./runpilot2-wrapper.sh count=1
[2025-11-05 16:41:12] ++ head -n 1
[2025-11-05 16:41:12] ++ tr -d '\0'
[2025-11-05 16:41:12] + line1='#!/bin/bash'
[2025-11-05 16:41:12] ++ echo '#!/bin/bash'
[2025-11-05 16:41:12] ++ sed -n 's/^#! *//p'
[2025-11-05 16:41:12] + shebang=/bin/bash
[2025-11-05 16:41:12] ++ echo /bin/bash
[2025-11-05 16:41:12] ++ awk '{print $1}'
[2025-11-05 16:41:12] + interpreter=/bin/bash
[2025-11-05 16:41:12] + '[' /bin/bash = /usr/bin/env ']'
[2025-11-05 16:41:12] + '[' x/bin/bash = x ']'
[2025-11-05 16:41:12] + type /bin/bash
[2025-11-05 16:41:12] + '[' xgnutime = xgnutime ']'
[2025-11-05 16:41:12] + /usr/bin/time -o /scratch/boinc/var/slot36/slots/0/LywLDmnuDY8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmrhFODmkA8cRo.diag -a -f 'WallTime=%es\nKernelTime=%Ss\nUserTime=%Us\nCPUUsage=%P\nMaxResidentMemory=%MkB\nAverageResidentMemory=%tkB\nAverageTotalMemory=%KkB\nAverageUnsharedMemory=%DkB\nAverageUnsharedStack=%pkB\nAverageSharedMemory=%XkB\nPageSize=%ZB\nMajorPageFaults=%F\nMinorPageFaults=%R\nSwaps=%W\nForcedSwitches=%c\nWaitSwitches=%w\nInputs=%I\nOutputs=%O\nSocketReceived=%r\nSocketSent=%s\nSignals=%k\n' ./runpilot2-wrapper.sh -q BOINC_MCORE -j managed --pilot-user ATLAS --harvester-submit-mode PUSH -w generic --job-type managed --resource-type MCORE --pilotversion 3.11.0.29 -z -t --piloturl local --mute --container
[2025-11-05 16:41:12] + RESULT=2
[2025-11-05 16:41:12] + sed -i -e /nodename=/d /scratch/boinc/var/slot36/slots/0/LywLDmnuDY8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmrhFODmkA8cRo.diag
[2025-11-05 16:41:12] ++ grep domain_name init_data.xml
[2025-11-05 16:41:12] ++ awk -F '>' '{print $2}'
[2025-11-05 16:41:12] ++ awk -F '<' '{print $1}'
[2025-11-05 16:41:12] ++ sed -e 's# #_#g'
[2025-11-05 16:41:12] + hostname=skurut01.grid.cesnet.cz
[2025-11-05 16:41:12] ++ grep user_name init_data.xml
[2025-11-05 16:41:12] ++ awk -F '>' '{print $2}'
[2025-11-05 16:41:12] ++ awk -F '<' '{print $1}'
[2025-11-05 16:41:12] ++ sed -e 's# #_#g'
[2025-11-05 16:41:12] + username=praguelcg2
[2025-11-05 16:41:12] + nodename=praguelcg2@skurut01.grid.cesnet.cz
[2025-11-05 16:41:12] + echo nodename=praguelcg2@skurut01.grid.cesnet.cz
[2025-11-05 16:41:12] + '[' -n 4 ']'
[2025-11-05 16:41:12] + sed -i -e s/Processors=1/Processors=4/ /scratch/boinc/var/slot36/slots/0/LywLDmnuDY8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmrhFODmkA8cRo.diag
[2025-11-05 16:41:12] + echo exitcode=2
[2025-11-05 16:41:12] + runtimeenvironments=
[2025-11-05 16:41:12] + runtimeenvironments='APPS/HEP/ATLAS-SITE;'
[2025-11-05 16:41:12] + RTE_function_0 2
[2025-11-05 16:41:12] + export PROJECT_ROOT=/boincdata/boinc/project/lhcathome
[2025-11-05 16:41:12] + PROJECT_ROOT=/boincdata/boinc/project/lhcathome
[2025-11-05 16:41:12] + export BOINC_APP=ATLAS
[2025-11-05 16:41:12] + BOINC_APP=ATLAS
[2025-11-05 16:41:12] + export WU_TEMPLATE=templates/ATLAS_IN_DYNAMIC
[2025-11-05 16:41:12] + WU_TEMPLATE=templates/ATLAS_IN_DYNAMIC
[2025-11-05 16:41:12] + export RESULT_TEMPLATE=templates/ATLAS_OUT_2
[2025-11-05 16:41:12] + RESULT_TEMPLATE=templates/ATLAS_OUT_2
[2025-11-05 16:41:12] + '[' -z 2 ']'
[2025-11-05 16:41:12] + '[' 2 == 1 ']'
[2025-11-05 16:41:12] + '[' 0 -ne 0 ']'
[2025-11-05 16:41:12] + echo 'zip all output files'
[2025-11-05 16:41:12] + flist='*.diag '
[2025-11-05 16:41:12] + for f in ./heartbeat.json ./output.list ./log.47081490._006310.job.log.1 ./log.47081490._006310.job.log.1 ./gmlog/
[2025-11-05 16:41:12] + '[' -e ./heartbeat.json ']'
[2025-11-05 16:41:12] + flist='*.diag  ./heartbeat.json'
[2025-11-05 16:41:12] + for f in ./heartbeat.json ./output.list ./log.47081490._006310.job.log.1 ./log.47081490._006310.job.log.1 ./gmlog/
[2025-11-05 16:41:12] + '[' -e ./output.list ']'
[2025-11-05 16:41:12] + for f in ./heartbeat.json ./output.list ./log.47081490._006310.job.log.1 ./log.47081490._006310.job.log.1 ./gmlog/
[2025-11-05 16:41:12] + '[' -e ./log.47081490._006310.job.log.1 ']'
[2025-11-05 16:41:12] + flist='*.diag  ./heartbeat.json ./log.47081490._006310.job.log.1'
[2025-11-05 16:41:12] + for f in ./heartbeat.json ./output.list ./log.47081490._006310.job.log.1 ./log.47081490._006310.job.log.1 ./gmlog/
[2025-11-05 16:41:12] + '[' -e ./log.47081490._006310.job.log.1 ']'
[2025-11-05 16:41:12] + flist='*.diag  ./heartbeat.json ./log.47081490._006310.job.log.1 ./log.47081490._006310.job.log.1'
[2025-11-05 16:41:12] + for f in ./heartbeat.json ./output.list ./log.47081490._006310.job.log.1 ./log.47081490._006310.job.log.1 ./gmlog/
[2025-11-05 16:41:12] + '[' -e ./gmlog/ ']'
[2025-11-05 16:41:12] + '[' -f output.list ']'
[2025-11-05 16:41:12] + tar cvf result.tar.gz LywLDmnuDY8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmrhFODmkA8cRo.diag ./heartbeat.json ./log.47081490._006310.job.log.1 ./log.47081490._006310.job.log.1
[2025-11-05 16:41:12] + '[' xgnutime = xcgroup ']'
[2025-11-05 16:41:12] + '[' -n '' ']'
[2025-11-05 16:41:12] + '[' -n '' ']'
[2025-11-05 16:41:12] ++ date +%s
[2025-11-05 16:41:12] + ACCOUNTING_ENDTIME=1762357252
[2025-11-05 16:41:12] ++ date -d '1970-01-01 UTC 1762357062 seconds' +%Y%m%d%H%M%SZ
[2025-11-05 16:41:12] + echo LRMSStartTime=20251105163742Z
[2025-11-05 16:41:12] ++ date -d '1970-01-01 UTC 1762357252 seconds' +%Y%m%d%H%M%SZ
[2025-11-05 16:41:12] + echo LRMSEndTime=20251105164052Z
[2025-11-05 16:41:12] + echo walltime=190
[2025-11-05 16:41:12] + echo exitcode=2
[2025-11-05 16:41:12] + exit 2
[2025-11-05 16:41:12] ./log.47081490._006310.job.log.1
[2025-11-05 16:41:12] ./pilotlog.txt
[2025-11-05 16:41:12] ./runtime_log.err
[2025-11-05 16:41:12] ./PanDA_Pilot-6864230423/prmon.log
[2025-11-05 16:41:12] ./PanDA_Pilot-6864230423/pilotlog.txt
[2025-11-05 16:41:12] ./PanDA_Pilot-6864230423/PoolFileCatalog.xml
[2025-11-05 16:41:12] ./PanDA_Pilot-6864230423/log.EVNTtoHITS
[2025-11-05 16:41:12] ./pilot3/pilot/util/loggingsupport.py
[2025-11-05 16:41:12] ./pilot3/pilot/util/__pycache__/realtimelogger.cpython-39.pyc
[2025-11-05 16:41:12] ./pilot3/pilot/util/__pycache__/lokirealtimelogger.cpython-39.pyc
[2025-11-05 16:41:12] ./pilot3/pilot/util/__pycache__/loggingsupport.cpython-39.pyc
[2025-11-05 16:41:12] ./pilot3/pilot/util/realtimelogger.py
[2025-11-05 16:41:12] ./pilot3/pilot/util/lokirealtimelogger.py
[2025-11-05 16:41:12] ./runtime_log
16:52:06 (1898595): run_atlas exited; CPU time 19.603924
16:52:06 (1898595): app exit status: 0x1
16:52:06 (1898595): called boinc_finish(195)

</stderr_txt>
]]>

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