Stderr output

<core_client_version>8.2.4</core_client_version>
<![CDATA[
<stderr_txt>
2025-10-29 09:30:43 (100012): vboxwrapper version 26210
2025-10-29 09:30:43 (100012): BOINC client version: 8.2.4
2025-10-29 09:30:43 (100012): Detected: VirtualBox VboxManage Interface (Version: 6.1.12)
2025-10-29 09:30:44 (100012): Successfully copied 'init_data.xml' to the shared directory.
2025-10-29 09:30:44 (100012): Create VM. (boinc_37eea15797842561, slot#3)
2025-10-29 09:30:46 (100012): Setting Memory Size for VM. (4400MB)
2025-10-29 09:30:46 (100012): Setting CPU Count for VM. (4)
2025-10-29 09:30:47 (100012): Setting Chipset Options for VM.
2025-10-29 09:30:47 (100012): Setting Graphics Controller Options for VM. (Driver: VBoxVGA, 16MB)
2025-10-29 09:30:48 (100012): Setting Boot Options for VM.
2025-10-29 09:30:48 (100012): Setting Network Configuration for NAT. (Driver: virtio)
2025-10-29 09:30:49 (100012): Enabling VM Network Access.
2025-10-29 09:30:49 (100012): Disabling USB Support for VM.
2025-10-29 09:30:49 (100012): Disabling COM Port Support for VM.
2025-10-29 09:30:50 (100012): Disabling LPT Port Support for VM.
2025-10-29 09:30:50 (100012): Disabling Audio Support for VM.
2025-10-29 09:30:50 (100012): Disabling Clipboard Support for VM.
2025-10-29 09:30:51 (100012): Disabling Drag and Drop Support for VM.
2025-10-29 09:30:51 (100012): Adding storage controller(s) to VM.
2025-10-29 09:30:52 (100012): Adding virtual disk drive to VM. (ATLAS_vbox_3.03_image.vdi)
2025-10-29 09:30:54 (100012): Adding VirtualBox Guest Additions to VM.
2025-10-29 09:30:54 (100012): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2025-10-29 09:30:55 (100012): forwarding host port 62497 to guest port 80
2025-10-29 09:30:55 (100012): Enabling remote desktop for VM.
2025-10-29 09:30:55 (100012): Required extension pack not installed, remote desktop not enabled.
2025-10-29 09:30:55 (100012): Enabling shared directory for VM.
2025-10-29 09:30:56 (100012): Starting VM using VBoxManage interface. (boinc_37eea15797842561, slot#3)
2025-10-29 09:31:24 (100012): Successfully started VM. (PID = '100380')
2025-10-29 09:31:24 (100012): Reporting VM Process ID to BOINC.
2025-10-29 09:31:24 (100012): Guest Log: BIOS: VirtualBox 6.1.12
2025-10-29 09:31:24 (100012): Guest Log: CPUID EDX: 0x178bfbff
2025-10-29 09:31:24 (100012): Guest Log: BIOS: No PCI IDE controller, not probing IDE
2025-10-29 09:31:24 (100012): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2025-10-29 09:31:24 (100012): VM state change detected. (old = 'poweredoff', new = 'running')
2025-10-29 09:31:24 (100012): Detected: Web Application Enabled (http://localhost:62497)
2025-10-29 09:31:24 (100012): Preference change detected
2025-10-29 09:31:24 (100012): Setting CPU throttle for VM. (100%)
2025-10-29 09:31:25 (100012): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 60 seconds) or (Vbox_job.xml: 900 seconds))
2025-10-29 09:31:26 (100012): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2025-10-29 09:31:26 (100012): Guest Log: BIOS: Booting from Hard Disk...
2025-10-29 09:31:32 (100012): Guest Log: BIOS: KBD: unsupported int 16h function 03
2025-10-29 09:31:32 (100012): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2025-10-29 09:31:32 (100012): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2025-10-29 09:31:32 (100012): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2025-10-29 09:31:32 (100012): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2025-10-29 09:31:32 (100012): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2025-10-29 09:31:32 (100012): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2025-10-29 09:31:32 (100012): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2025-10-29 09:31:32 (100012): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2025-10-29 09:31:32 (100012): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2025-10-29 09:31:32 (100012): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2025-10-29 09:31:32 (100012): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2025-10-29 09:31:32 (100012): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2025-10-29 09:31:33 (100012): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2025-10-29 09:31:33 (100012): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2025-10-29 09:31:33 (100012): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2025-10-29 09:31:33 (100012): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2025-10-29 09:31:33 (100012): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2025-10-29 09:31:33 (100012): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2025-10-29 09:31:33 (100012): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2025-10-29 09:31:33 (100012): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2025-10-29 09:31:33 (100012): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2025-10-29 09:31:33 (100012): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2025-10-29 09:31:33 (100012): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2025-10-29 09:31:33 (100012): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2025-10-29 09:31:33 (100012): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2025-10-29 09:31:33 (100012): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2025-10-29 09:31:33 (100012): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2025-10-29 09:31:33 (100012): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2025-10-29 09:31:33 (100012): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2025-10-29 09:31:33 (100012): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2025-10-29 09:31:33 (100012): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2025-10-29 09:31:56 (100012): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2025-10-29 09:31:56 (100012): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0000000 (size 0x400000)
2025-10-29 09:32:46 (100012): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2025-10-29 09:32:46 (100012): Guest Log: 00:00:00.002937 main     Log opened 2025-10-29T09:32:43.449423000Z
2025-10-29 09:32:46 (100012): Guest Log: 00:00:00.004374 main     OS Product: Linux
2025-10-29 09:32:46 (100012): Guest Log: 00:00:00.005893 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2025-10-29 09:32:46 (100012): Guest Log: 00:00:00.006565 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2025-10-29 09:32:46 (100012): Guest Log: 00:00:00.007360 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2025-10-29 09:32:46 (100012): Guest Log: 00:00:00.007364 main     Process ID: 1300
2025-10-29 09:32:46 (100012): Guest Log: 00:00:00.007365 main     Package type: LINUX_64BITS_GENERIC
2025-10-29 09:32:46 (100012): Guest Log: 00:00:00.021492 main     5.2.32 r132073 started. Verbose level = 0
2025-10-29 09:32:48 (100012): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2025-10-29 09:32:48 (100012): Guest Log: [INFO] Mounting shared directory
2025-10-29 09:32:48 (100012): Guest Log: [INFO] Checking for init_data.xml
2025-10-29 09:32:54 (100012): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2025-10-29 09:32:54 (100012): Guest Log: [INFO] Detected branch: prod
2025-10-29 09:32:54 (100012): Guest Log: This is the prod version of the ATLAS job wrapper
2025-10-29 09:32:54 (100012): Guest Log: Copying input files
2025-10-29 09:32:56 (100012): Guest Log: 00:00:10.053522 timesync vgsvcTimeSyncWorker: Radical guest time change: 14 412 250 935 000ns (GuestNow=1 761 744 775 749 962 000 ns GuestLast=1 761 730 363 499 027 000 ns fSetTimeLastLoop=true )
2025-10-29 09:33:02 (100012): Guest Log: Copied input files into RunAtlas.
2025-10-29 09:33:02 (100012): Guest Log: This VM did not configure a local http proxy via BOINC.
2025-10-29 09:33:02 (100012): Guest Log: Small home clusters do not require a local http proxy but it is suggested if
2025-10-29 09:33:02 (100012): Guest Log: more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
2025-10-29 09:33:02 (100012): Guest Log: Further information can be found at the LHC@home message board.
2025-10-29 09:33:41 (100012): Guest Log: Running cvmfs_config stat atlas.cern.ch
2025-10-29 09:33:42 (100012): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2025-10-29 09:33:42 (100012): Guest Log: 2.6.3.0 1579 0 30184 152266 3 1 3117639 4096000 0 65024 0 0 n/a 0 0 http://s1fnal-cvmfs.openhtc.io:8080/cvmfs/atlas.cern.ch DIRECT 1
2025-10-29 09:33:50 (100012): Guest Log: copied the webapp to /var/www
2025-10-29 09:33:50 (100012): Guest Log: ATHENA_PROC_NUMBER=4
2025-10-29 09:33:50 (100012): Guest Log: ATHENA_CORE_NUMBER=4
2025-10-29 09:33:51 (100012): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2025-10-29 09:33:51 (100012): Guest Log:  *** Starting ATLAS job. (PandaID=6864229011 taskID=47081490) ***
2025-10-29 09:53:39 (100012): Guest Log:  *** Job finished ***
2025-10-29 09:53:39 (100012): Guest Log:  *** The last 20 lines of the pilot log: ***
2025-10-29 09:53:39 (100012): Guest Log: 2025-10-29 13:53:20,156 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 140119836198720)>', '<ExcThread(queue_monitor, started 140119231141632)>']
2025-10-29 09:53:39 (100012): Guest Log: 2025-10-29 13:53:22,162 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 140119836198720)>', '<ExcThread(queue_monitor, started 140119231141632)>']
2025-10-29 09:53:39 (100012): Guest Log: 2025-10-29 13:53:24,193 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 140119836198720)>', '<ExcThread(queue_monitor, started 140119231141632)>']
2025-10-29 09:53:39 (100012): Guest Log: 2025-10-29 13:53:26,205 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 140119836198720)>', '<ExcThread(queue_monitor, started 140119231141632)>']
2025-10-29 09:53:39 (100012): Guest Log: 2025-10-29 13:53:28,220 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 140119836198720)>', '<ExcThread(queue_monitor, started 140119231141632)>']
2025-10-29 09:53:39 (100012): Guest Log: 2025-10-29 13:53:30,312 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 140119836198720)>', '<ExcThread(queue_monitor, started 140119231141632)>']
2025-10-29 09:53:39 (100012): Guest Log: 2025-10-29 13:53:32,403 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 140119836198720)>', '<ExcThread(queue_monitor, started 140119231141632)>']
2025-10-29 09:53:39 (100012): Guest Log: 2025-10-29 13:53:33,504 [wrapper] The pilot process (6011) is still running after 3m. Sending SIGKILL (9).
2025-10-29 09:53:39 (100012): Guest Log: 2025-10-29 13:53:33,539 [wrapper] The pilot process (6011) is still running after 3m. Sending SIGKILL (9).
2025-10-29 09:53:39 (100012): Guest Log: 2025-10-29 13:53:33,564 [wrapper] ==== pilot stdout END ====
2025-10-29 09:53:39 (100012): Guest Log: 2025-10-29 13:53:33,601 [wrapper] ==== wrapper stdout RESUME ====
2025-10-29 09:53:39 (100012): Guest Log: 2025-10-29 13:53:33,608 [wrapper] pilotpid: 6011
2025-10-29 09:53:39 (100012): Guest Log: 2025-10-29 13:53:33,632 [wrapper] Pilot exit status: 137
2025-10-29 09:53:39 (100012): Guest Log: 2025-10-29 13:53:36,309 [wrapper] pandaids: 6864229011
2025-10-29 09:53:39 (100012): Guest Log: 2025-10-29 13:53:36,387 [wrapper] Found: wrapper_sigkill_6011, so killed by wrapper
2025-10-29 09:53:39 (100012): Guest Log: 2025-10-29 13:53:36,529 [wrapper] No supervise_pilot CHILD process found
2025-10-29 09:53:39 (100012): Guest Log: 2025-10-29 13:53:36,536 [wrapper] Test setup, not cleaning
2025-10-29 09:53:39 (100012): Guest Log: 2025-10-29 13:53:36,620 [wrapper] apfmon messages muted
2025-10-29 09:53:39 (100012): Guest Log: 2025-10-29 13:53:36,673 [wrapper] ==== wrapper stdout END ====
2025-10-29 09:53:39 (100012): Guest Log: 2025-10-29 13:53:36,688 [wrapper] ==== wrapper stderr END ====
2025-10-29 09:53:39 (100012): Guest Log:  *** Error codes and diagnostics ***
2025-10-29 09:53:39 (100012): Guest Log:  *** Listing of results directory ***
2025-10-29 09:53:39 (100012): Guest Log: total 4200
2025-10-29 09:53:39 (100012): Guest Log: -rwx------. 1 atlas atlas   36292 Oct 29 05:26 runpilot2-wrapper.sh
2025-10-29 09:53:39 (100012): Guest Log: -rw-r--r--. 1 atlas atlas  557409 Oct 29 05:27 pilot3.tar.gz
2025-10-29 09:53:39 (100012): Guest Log: -rw-r--r--. 1 atlas atlas    5112 Oct 29 05:27 queuedata.json
2025-10-29 09:53:39 (100012): Guest Log: -rwxr-xr-x. 1 atlas atlas    7948 Oct 29 13:33 init_data.xml
2025-10-29 09:53:39 (100012): Guest Log: -rwxr-xr-x. 1 atlas atlas  569673 Oct 29 13:33 input.tar.gz
2025-10-29 09:53:39 (100012): Guest Log: -rwxr-xr-x. 1 atlas atlas   15120 Oct 29 13:33 start_atlas.sh
2025-10-29 09:53:39 (100012): Guest Log: lrwxrwxrwx. 1 atlas atlas      20 Oct 29 13:33 EVNT.47081487._000224.pool.root.1 -> /data/./ATLAS.root_0
2025-10-29 09:53:39 (100012): Guest Log: -rw-r--r--. 1 atlas atlas    2525 Oct 29 13:33 pandaJob.out
2025-10-29 09:53:39 (100012): Guest Log: -rw-------. 1 atlas atlas  982988 Oct 29 13:35 agis_schedconf.cvmfs.json
2025-10-29 09:53:39 (100012): Guest Log: -rw-------. 1 atlas atlas 1560632 Oct 29 13:35 agis_ddmendpoints.agis.ALL.json
2025-10-29 09:53:39 (100012): Guest Log: drwx------. 5 atlas atlas    4096 Oct 29 13:36 pilot3
2025-10-29 09:53:39 (100012): Guest Log: -rw-------. 1 atlas atlas     747 Oct 29 13:38 heartbeat.json
2025-10-29 09:53:39 (100012): Guest Log: -rw-------. 1 atlas atlas      95 Oct 29 13:50 pilot_heartbeat.json
2025-10-29 09:53:39 (100012): Guest Log: -rw-------. 1 atlas atlas       0 Oct 29 13:50 wrapper_sigint_6011
2025-10-29 09:53:39 (100012): Guest Log: drwxrwx---. 2 atlas atlas    4096 Oct 29 13:50 PanDA_Pilot-6864229011
2025-10-29 09:53:39 (100012): Guest Log: -rw-------. 1 atlas atlas    1022 Oct 29 13:50 memory_monitor_summary.json
2025-10-29 09:53:39 (100012): Guest Log: -rw-------. 1 atlas atlas  155741 Oct 29 13:53 pilotlog.txt
2025-10-29 09:53:39 (100012): Guest Log: -rw-------. 1 atlas atlas       0 Oct 29 13:53 wrapper_sigkill_6011
2025-10-29 09:53:39 (100012): Guest Log: -rw-------. 1 atlas atlas  167994 Oct 29 13:53 log.47081490._005857.job.log.1
2025-10-29 09:53:39 (100012): Guest Log: -rw-r--r--. 1 atlas atlas     571 Oct 29 13:53 runtime_log
2025-10-29 09:53:39 (100012): Guest Log: -rw-------. 1 atlas atlas  174080 Oct 29 13:53 result.tar.gz
2025-10-29 09:53:39 (100012): Guest Log: -rw-------. 1 atlas atlas     653 Oct 29 13:53 ZsaKDm4sDY8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmqfFODmsFPTun.diag
2025-10-29 09:53:39 (100012): Guest Log: -rw-r--r--. 1 atlas atlas    7990 Oct 29 13:53 runtime_log.err
2025-10-29 09:53:39 (100012): Guest Log: Looking for outputfile HITS.47081490._005857.pool.root.1
2025-10-29 09:53:39 (100012): Guest Log: No HITS file was produced
2025-10-29 09:53:39 (100012): Guest Log: Successfully finished the ATLAS job!
2025-10-29 09:53:39 (100012): Guest Log: Copying the results back to the shared directory!
2025-10-29 09:53:39 (100012): Guest Log:  *** Contents of shared directory: ***
2025-10-29 09:53:39 (100012): Guest Log: total 213416
2025-10-29 09:53:39 (100012): Guest Log: -rwxrwxrwx. 1 root root 217762754 Oct 29 13:30 ATLAS.root_0
2025-10-29 09:53:39 (100012): Guest Log: -rwxrwxrwx. 1 root root      7948 Oct 29 13:30 init_data.xml
2025-10-29 09:53:39 (100012): Guest Log: -rwxrwxrwx. 1 root root    569673 Oct 29 06:18 input.tar.gz
2025-10-29 09:53:39 (100012): Guest Log: -rwxrwxrwx. 1 root root    174080 Oct 29 13:53 result.tar.gz
2025-10-29 09:53:39 (100012): Guest Log: -rwxrwxrwx. 1 root root     15120 Oct 29 06:18 start_atlas.sh
2025-10-29 09:53:39 (100012): Guest Log:  *** Success! Shutting down the machine. ***
2025-10-29 09:53:39 (100012): VM Completion File Detected.
2025-10-29 09:53:40 (100012): Powering off VM.
2025-10-29 09:53:45 (100012): Successfully stopped VM.
2025-10-29 09:53:45 (100012): Deregistering VM. (boinc_37eea15797842561, slot#3)
2025-10-29 09:53:45 (100012): Removing network bandwidth throttle group from VM.
2025-10-29 09:53:46 (100012): Removing VM from VirtualBox.
2025-10-29 09:53:52 (100012): called boinc_finish(0)

</stderr_txt>
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