Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
06:45:50 (526592): wrapper (7.7.26015): starting
06:45:50 (526592): wrapper: running run_atlas (--nthreads 12)
[2025-10-26 06:45:50] Arguments: --nthreads 12
[2025-10-26 06:45:50] Threads: 12
[2025-10-26 06:45:50] Checking for CVMFS
[2025-10-26 06:45:50] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-26 06:45:50] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-26 06:45:50] Running cvmfs_config stat atlas.cern.ch
[2025-10-26 06:45:51] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-26 06:45:51] 2.13.2.0 1918225 18055 190500 152143 1 172 33071662 46080000 45470 130560 0 115806005 99.957 14763007 23351 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://[2001:1458:301:47::100:c]:3126 1
[2025-10-26 06:45:51] CVMFS is ok
[2025-10-26 06:45:51] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-26 06:45:51] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-26 06:45:51] Further information can be found at the LHC@home message board.
[2025-10-26 06:45:51] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-26 06:45:51] Checking for apptainer binary...
[2025-10-26 06:45:51] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-26 06:45:51] Running /usr/bin/apptainer --version
[2025-10-26 06:45:51] apptainer version 1.4.2-1.el9
[2025-10-26 06:45:51] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-26 06:45:51] mff2104.farm.particle.cz
[2025-10-26 06:45:51] apptainer works
[2025-10-26 06:45:51] Set ATHENA_PROC_NUMBER=12
[2025-10-26 06:45:51] Set ATHENA_CORE_NUMBER=12
[2025-10-26 06:45:51] Starting ATLAS job with PandaID=6860396713
[2025-10-26 06:45:51] Running command: /usr/bin/apptainer exec -B /cvmfs,/scratch/.boinc/slots/2 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-26 08:02:42]  *** The last 200 lines of the pilot log: ***
[2025-10-26 08:02:42] ]
[2025-10-26 08:02:42] 2025-10-26 06:57:04,562 | INFO     | transferring file log.46964913._004729.job.log.tgz.1 from /scratch/.boinc/slots/2/PanDA_Pilot-6860396713/log.46964913._004729.job.log.tgz.1 to /scratch/.boinc/slot
[2025-10-26 08:02:42] 2025-10-26 06:57:04,562 | INFO     | executing command: /usr/bin/env mv /scratch/.boinc/slots/2/PanDA_Pilot-6860396713/log.46964913._004729.job.log.tgz.1 /scratch/.boinc/slots/2/log.46964913._004729.j
[2025-10-26 08:02:42] 2025-10-26 06:57:04,594 | INFO     | adding to output.list: log.46964913._004729.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/07/33/log.46964913._004729.job.log.tg
[2025-10-26 08:02:42] 2025-10-26 06:57:04,595 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-10-26 08:02:42] 2025-10-26 06:57:04,595 | INFO     | summary of transferred files:
[2025-10-26 08:02:42] 2025-10-26 06:57:04,595 | INFO     |  -- lfn=log.46964913._004729.job.log.tgz.1, status_code=0, status=transferred
[2025-10-26 08:02:42] 2025-10-26 06:57:04,595 | INFO     | stage-out finished correctly
[2025-10-26 08:02:42] 2025-10-26 06:57:05,569 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-10-26 08:02:42] 2025-10-26 06:57:05,820 | INFO     | time since job start (4258s) is within the limit (172800.0s)
[2025-10-26 08:02:42] 2025-10-26 06:57:06,317 | WARNING  | process 552175 can no longer be monitored (due to stat problems) - aborting
[2025-10-26 08:02:42] 2025-10-26 06:57:06,318 | INFO     | using path: /scratch/.boinc/slots/2/PanDA_Pilot-6860396713/memory_monitor_summary.json (trf name=prmon)
[2025-10-26 08:02:42] 2025-10-26 06:57:07,055 | INFO     | number of running child processes to parent process 552175: 1
[2025-10-26 08:02:42] 2025-10-26 06:57:07,056 | INFO     | maximum number of monitored processes: 6
[2025-10-26 08:02:42] 2025-10-26 06:57:07,735 | INFO     | PID=534692 has CPU usage=19.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-26 08:02:42] 2025-10-26 06:57:07,736 | INFO     | .. there are 80 such processes running
[2025-10-26 08:02:42] 2025-10-26 06:57:08,552 | INFO     | job 6860396713 has state=finished
[2025-10-26 08:02:42] 2025-10-26 06:57:08,552 | INFO     | preparing for final server update for job 6860396713 in state='finished'
[2025-10-26 08:02:42] 2025-10-26 06:57:08,552 | INFO     | this job has now completed (state=finished)
[2025-10-26 08:02:42] 2025-10-26 06:57:08,553 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-10-26 08:02:42] 2025-10-26 06:57:08,553 | INFO     | log transfer has been attempted: DONE
[2025-10-26 08:02:42] 2025-10-26 06:57:08,553 | INFO     | job 6860396713 has finished - writing final server update
[2025-10-26 08:02:42] 2025-10-26 06:57:08,553 | INFO     | total number of processed events: 400 (read)
[2025-10-26 08:02:42] 2025-10-26 06:57:08,558 | INFO     | executing command: lscpu
[2025-10-26 08:02:42] 2025-10-26 06:57:08,636 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-10-26 08:02:42] 2025-10-26 06:57:08,736 | INFO     | time since job start (4261s) is within the limit (172800.0s)
[2025-10-26 08:02:42] 2025-10-26 06:57:09,559 | INFO     | monitor loop #292: job 0:6860396713 is in state 'finished'
[2025-10-26 08:02:42] 2025-10-26 06:57:09,560 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-26 08:02:42] 2025-10-26 06:57:10,743 | INFO     | time since job start (4263s) is within the limit (172800.0s)
[2025-10-26 08:02:42] 2025-10-26 06:57:12,105 | INFO     | monitor loop #293: job 0:6860396713 is in state 'finished'
[2025-10-26 08:02:42] 2025-10-26 06:57:12,106 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-26 08:02:42] 2025-10-26 06:57:12,749 | INFO     | time since job start (4265s) is within the limit (172800.0s)
[2025-10-26 08:02:42] 2025-10-26 06:57:14,610 | INFO     | monitor loop #294: job 0:6860396713 is in state 'finished'
[2025-10-26 08:02:42] 2025-10-26 06:57:14,610 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-26 08:02:42] 2025-10-26 06:57:14,755 | INFO     | time since job start (4267s) is within the limit (172800.0s)
[2025-10-26 08:02:42] 2025-10-26 06:57:16,324 | INFO     | CPU arch script returned: x86-64-v3
[2025-10-26 08:02:42] 2025-10-26 06:57:16,337 | INFO     | found 48 cores (24 cores per socket, 2 sockets) HT, CPU MHz: 2931.1376666666674
[2025-10-26 08:02:42] 2025-10-26 06:57:16,354 | INFO     | using path: /scratch/.boinc/slots/2/PanDA_Pilot-6860396713/memory_monitor_summary.json (trf name=prmon)
[2025-10-26 08:02:42] 2025-10-26 06:57:16,355 | INFO     | extracted standard info from prmon json
[2025-10-26 08:02:42] 2025-10-26 06:57:16,355 | INFO     | extracted standard memory fields from prmon json
[2025-10-26 08:02:42] 2025-10-26 06:57:16,355 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-26 08:02:42] 2025-10-26 06:57:16,355 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-26 08:02:42] 2025-10-26 06:57:16,355 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-26 08:02:42] 2025-10-26 06:57:16,357 | INFO     | fitting pss+swap vs Time
[2025-10-26 08:02:42] 2025-10-26 06:57:16,357 | INFO     | sum of square deviations: 77515872.0
[2025-10-26 08:02:42] 2025-10-26 06:57:16,358 | INFO     | sum of deviations: -4605268565.999999
[2025-10-26 08:02:42] 2025-10-26 06:57:16,358 | INFO     | mean x: 1761459802.0
[2025-10-26 08:02:42] 2025-10-26 06:57:16,358 | INFO     | mean y: 2783267.3333333335
[2025-10-26 08:02:42] 2025-10-26 06:57:16,358 | INFO     | -- intersect: 104652260169.60158
[2025-10-26 08:02:42] 2025-10-26 06:57:16,358 | INFO     | intersect: 104652260169.60158
[2025-10-26 08:02:42] 2025-10-26 06:57:16,358 | INFO     | chi2: 0.026216102643976506
[2025-10-26 08:02:42] 2025-10-26 06:57:16,358 | INFO     | -- intersect: 104652260169.60158
[2025-10-26 08:02:42] 2025-10-26 06:57:16,359 | INFO     | current memory leak: -59.41 B/s (using 63 data points, chi2=0.03)
[2025-10-26 08:02:42] 2025-10-26 06:57:16,359 | INFO     | could have reported an average CPU frequency of 2903 MHz (6 samples)
[2025-10-26 08:02:42] 2025-10-26 06:57:16,359 | INFO     | ..............................
[2025-10-26 08:02:42] 2025-10-26 06:57:16,359 | INFO     | . Timing measurements:
[2025-10-26 08:02:42] 2025-10-26 06:57:16,359 | INFO     | . get job = 0 s
[2025-10-26 08:02:42] 2025-10-26 06:57:16,359 | INFO     | . initial setup = 1 s
[2025-10-26 08:02:42] 2025-10-26 06:57:16,359 | INFO     | . payload setup = 10 s
[2025-10-26 08:02:42] 2025-10-26 06:57:16,359 | INFO     | . stage-in = 0 s
[2025-10-26 08:02:42] 2025-10-26 06:57:16,359 | INFO     | . payload execution = 4223 s
[2025-10-26 08:02:42] 2025-10-26 06:57:16,359 | INFO     | . stage-out = 0 s
[2025-10-26 08:02:42] 2025-10-26 06:57:16,360 | INFO     | . log creation = 0 s
[2025-10-26 08:02:42] 2025-10-26 06:57:16,360 | INFO     | ..............................
[2025-10-26 08:02:42] 2025-10-26 06:57:16,585 | INFO     | 
[2025-10-26 08:02:42] 2025-10-26 06:57:16,585 | INFO     | job summary report
[2025-10-26 08:02:42] 2025-10-26 06:57:16,585 | INFO     | --------------------------------------------------
[2025-10-26 08:02:42] 2025-10-26 06:57:16,586 | INFO     | PanDA job id: 6860396713
[2025-10-26 08:02:42] 2025-10-26 06:57:16,586 | INFO     | task id: 46964913
[2025-10-26 08:02:42] 2025-10-26 06:57:16,586 | INFO     | errors: (none)
[2025-10-26 08:02:42] 2025-10-26 06:57:16,586 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-26 08:02:42] 2025-10-26 06:57:16,586 | INFO     | pilot state: finished 
[2025-10-26 08:02:42] 2025-10-26 06:57:16,586 | INFO     | transexitcode: 0
[2025-10-26 08:02:42] 2025-10-26 06:57:16,586 | INFO     | exeerrorcode: 0
[2025-10-26 08:02:42] 2025-10-26 06:57:16,586 | INFO     | exeerrordiag: 
[2025-10-26 08:02:42] 2025-10-26 06:57:16,586 | INFO     | exitcode: 0
[2025-10-26 08:02:42] 2025-10-26 06:57:16,586 | INFO     | exitmsg: OK
[2025-10-26 08:02:42] 2025-10-26 06:57:16,586 | INFO     | cpuconsumptiontime: 45259 s
[2025-10-26 08:02:42] 2025-10-26 06:57:16,586 | INFO     | nevents: 400
[2025-10-26 08:02:42] 2025-10-26 06:57:16,586 | INFO     | neventsw: 0
[2025-10-26 08:02:42] 2025-10-26 06:57:16,586 | INFO     | pid: 552175
[2025-10-26 08:02:42] 2025-10-26 06:57:16,586 | INFO     | pgrp: 552175
[2025-10-26 08:02:42] 2025-10-26 06:57:16,586 | INFO     | corecount: 12
[2025-10-26 08:02:42] 2025-10-26 06:57:16,587 | INFO     | event service: False
[2025-10-26 08:02:42] 2025-10-26 06:57:16,587 | INFO     | sizes: {0: 2348759, 1: 2348958, 8: 2349220, 11: 2349248, 4237: 2375385, 4239: 2384385, 4240: 2384569, 4250: 2384763}
[2025-10-26 08:02:42] 2025-10-26 06:57:16,587 | INFO     | --------------------------------------------------
[2025-10-26 08:02:42] 2025-10-26 06:57:16,587 | INFO     | 
[2025-10-26 08:02:42] 2025-10-26 06:57:16,587 | INFO     | executing command: ls -lF /scratch/.boinc/slots/2
[2025-10-26 08:02:42] 2025-10-26 06:57:16,618 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-26 08:02:42] 2025-10-26 06:57:16,619 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-26 08:02:42] 2025-10-26 06:57:16,619 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-26 08:02:42] 2025-10-26 06:57:16,619 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-26 08:02:42] 2025-10-26 06:57:16,619 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-26 08:02:42] 2025-10-26 06:57:16,619 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-26 08:02:42] 2025-10-26 06:57:16,619 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-26 08:02:42] 2025-10-26 06:57:16,619 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-26 08:02:42] 2025-10-26 06:57:16,619 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-26 08:02:42] 2025-10-26 06:57:16,619 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-26 08:02:42] 2025-10-26 06:57:16,619 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-26 08:02:42] 2025-10-26 06:57:16,619 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-26 08:02:42] 2025-10-26 06:57:16,619 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-26 08:02:42] 2025-10-26 06:57:16,620 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-26 08:02:42] 2025-10-26 06:57:16,620 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-26 08:02:42] 2025-10-26 06:57:16,620 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-26 08:02:42] 2025-10-26 06:57:16,620 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-26 08:02:42] 2025-10-26 06:57:16,620 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-26 08:02:42] 2025-10-26 06:57:16,620 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-26 08:02:42] 2025-10-26 06:57:16,620 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-26 08:02:42] 2025-10-26 06:57:16,620 | INFO     | job 6860396713 has completed (purged errors)
[2025-10-26 08:02:42] 2025-10-26 06:57:16,620 | INFO     | overall cleanup function is called
[2025-10-26 08:02:42] 2025-10-26 06:57:17,629 | INFO     | --- collectZombieJob: --- 10, [552175]
[2025-10-26 08:02:42] 2025-10-26 06:57:17,630 | INFO     | zombie collector waiting for pid 552175
[2025-10-26 08:02:42] 2025-10-26 06:57:17,630 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-26 08:02:42] 2025-10-26 06:57:17,630 | INFO     | collected zombie processes
[2025-10-26 08:02:42] 2025-10-26 06:57:17,630 | INFO     | will attempt to kill all subprocesses of pid=552175
[2025-10-26 08:02:42] 2025-10-26 06:57:18,241 | INFO     | process IDs to be killed: [552175] (in reverse order)
[2025-10-26 08:02:42] 2025-10-26 06:57:18,454 | WARNING  | found no corresponding commands to process id(s)
[2025-10-26 08:02:42] 2025-10-26 06:57:18,455 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-26 08:02:42] 2025-10-26 06:57:18,482 | INFO     | did not find any defunct processes belonging to 552175
[2025-10-26 08:02:42] 2025-10-26 06:57:18,510 | INFO     | did not find any defunct processes belonging to 552175
[2025-10-26 08:02:42] 2025-10-26 06:57:18,511 | INFO     | ready for new job
[2025-10-26 08:02:42] 2025-10-26 06:57:18,511 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-26 08:02:42] 2025-10-26 06:57:18,513 | INFO     | ***************************************
[2025-10-26 08:02:42] 2025-10-26 06:57:18,513 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-26 08:02:42] 2025-10-26 06:57:18,513 | INFO     | ***************************************
[2025-10-26 08:02:42] 2025-10-26 06:57:18,513 | INFO     | 
[2025-10-26 08:02:42] 2025-10-26 06:57:18,519 | INFO     | architecture information:
[2025-10-26 08:02:42] 2025-10-26 06:57:18,520 | INFO     | executing command: cat /etc/os-release
[2025-10-26 08:02:42] 2025-10-26 06:57:18,545 | INFO     | cat /etc/os-release:
[2025-10-26 08:02:42] NAME="CentOS Linux"
[2025-10-26 08:02:42] VERSION="7 (Core)"
[2025-10-26 08:02:42] ID="centos"
[2025-10-26 08:02:42] ID_LIKE="rhel fedora"
[2025-10-26 08:02:42] VERSION_ID="7"
[2025-10-26 08:02:42] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-26 08:02:42] ANSI_COLOR="0;31"
[2025-10-26 08:02:42] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-26 08:02:42] HOME_URL="https://www.centos.org/"
[2025-10-26 08:02:42] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-26 08:02:42] 
[2025-10-26 08:02:42] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-26 08:02:42] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-26 08:02:42] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-26 08:02:42] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-26 08:02:42] 
[2025-10-26 08:02:42] 2025-10-26 06:57:18,545 | INFO     | ***************************************
[2025-10-26 08:02:42] 2025-10-26 06:57:19,048 | INFO     | executing command: df -mP /scratch/.boinc/slots/2
[2025-10-26 08:02:42] 2025-10-26 06:57:19,074 | INFO     | sufficient remaining disk space (1680609378304 B)
[2025-10-26 08:02:42] 2025-10-26 06:57:19,074 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-26 08:02:42] 2025-10-26 06:57:19,074 | INFO     | current server update state: UPDATING_FINAL
[2025-10-26 08:02:42] 2025-10-26 06:57:19,074 | INFO     | update_server=False
[2025-10-26 08:02:42] 2025-10-26 06:57:19,074 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-26 08:02:42] 2025-10-26 06:57:19,075 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-26 08:02:42] 2025-10-26 06:57:19,075 | INFO     | aborting loop
[2025-10-26 08:02:42] 2025-10-26 06:57:19,926 | INFO     | all data control threads have been joined
[2025-10-26 08:02:42] 2025-10-26 06:57:20,079 | INFO     | [job] retrieve thread has finished
[2025-10-26 08:02:42] 2025-10-26 06:57:20,080 | INFO     | [job] job monitor thread has finished
[2025-10-26 08:02:42] 2025-10-26 06:57:20,185 | INFO     | [payload] validate_post thread has finished
[2025-10-26 08:02:42] 2025-10-26 06:57:20,203 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-26 08:02:42] 2025-10-26 06:57:20,245 | INFO     | all job control threads have been joined
[2025-10-26 08:02:42] 2025-10-26 06:57:20,476 | INFO     | [job] validate thread has finished
[2025-10-26 08:02:42] 2025-10-26 06:57:20,477 | INFO     | all payload control threads have been joined
[2025-10-26 08:02:42] 2025-10-26 06:57:20,591 | INFO     | [payload] execute_payloads thread has finished
[2025-10-26 08:02:42] 2025-10-26 06:57:20,676 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-26 08:02:42] 2025-10-26 06:57:20,867 | INFO     | [job] create_data_payload thread has finished
[2025-10-26 08:02:42] 2025-10-26 06:57:20,931 | INFO     | [data] control thread has finished
[2025-10-26 08:02:42] 2025-10-26 06:57:21,095 | INFO     | [payload] validate_pre thread has finished
[2025-10-26 08:02:42] 2025-10-26 06:57:21,167 | INFO     | [data] copytool_in thread has finished
[2025-10-26 08:02:42] 2025-10-26 06:57:21,250 | INFO     | [job] control thread has finished
[2025-10-26 08:02:42] 2025-10-26 06:57:21,465 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-26 08:02:42] 2025-10-26 06:57:21,482 | INFO     | [payload] control thread has finished
[2025-10-26 08:02:42] 2025-10-26 06:57:21,620 | INFO     | [payload] failed_post thread has finished
[2025-10-26 08:02:42] 2025-10-26 06:57:22,208 | INFO     | [data] copytool_out thread has finished
[2025-10-26 08:02:42] 2025-10-26 06:57:22,470 | INFO     | [job] queue monitor thread has finished
[2025-10-26 08:02:42] 2025-10-26 06:57:24,682 | INFO     | [data] queue_monitor thread has finished
[2025-10-26 08:02:42] 2025-10-26 06:57:29,584 | INFO     | job.realtimelogging is not enabled
[2025-10-26 08:02:42] 2025-10-26 06:57:30,589 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-26 08:02:42] 2025-10-26 06:57:48,574 | INFO     | PID=534692 has CPU usage=4.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-10-26 08:02:42] 2025-10-26 06:57:48,575 | INFO     | .. there are 79 such processes running
[2025-10-26 08:02:42] 2025-10-26 06:57:48,575 | INFO     | found 0 job(s) in 20 queues
[2025-10-26 08:02:42] 2025-10-26 06:57:48,575 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-26 08:02:42] 2025-10-26 06:57:48,575 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-26 08:02:42] 2025-10-26 06:58:13,844 | INFO     | [monitor] cgroup control has ended
[2025-10-26 08:02:42] 2025-10-26 06:58:14,280 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139748687652672)>', '<ExcThread(monitor, started 139748328843008)>']
[2025-10-26 08:02:42] 2025-10-26 06:58:14,706 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-26 08:02:42] 2025-10-26 06:58:14,707 | INFO     | [monitor] control thread has ended
[2025-10-26 08:02:42] 2025-10-26 06:58:19,304 | INFO     | all workflow threads have been joined
[2025-10-26 08:02:42] 2025-10-26 06:58:19,305 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-26 08:02:42] 2025-10-26 06:58:19,305 | INFO     | traces error code: 0
[2025-10-26 08:02:42] 2025-10-26 06:58:19,305 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-26 08:02:42] 2025-10-26 06:58:19,677 [wrapper] ==== pilot stdout END ====
[2025-10-26 08:02:42] 2025-10-26 06:58:19,681 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-26 08:02:42] 2025-10-26 06:58:19,687 [wrapper] pilotpid: 534692
[2025-10-26 08:02:42] 2025-10-26 06:58:19,692 [wrapper] Pilot exit status: 0
[2025-10-26 08:02:42] 2025-10-26 06:58:19,712 [wrapper] pandaids: 6860396713
[2025-10-26 08:02:42] 2025-10-26 06:58:19,852 [wrapper] cleanup supervisor_pilot  804149 534693
[2025-10-26 08:02:42] 2025-10-26 06:58:19,857 [wrapper] Test setup, not cleaning
[2025-10-26 08:02:42] 2025-10-26 06:58:19,862 [wrapper] apfmon messages muted
[2025-10-26 08:02:42] 2025-10-26 06:58:19,867 [wrapper] ==== wrapper stdout END ====
[2025-10-26 08:02:42] 2025-10-26 06:58:19,870 [wrapper] ==== wrapper stderr END ====
[2025-10-26 08:02:42]  *** Error codes and diagnostics ***
[2025-10-26 08:02:42]     "exeErrorCode": 0,
[2025-10-26 08:02:42]     "exeErrorDiag": "",
[2025-10-26 08:02:42]     "pilotErrorCode": 0,
[2025-10-26 08:02:42]     "pilotErrorDiag": "",
[2025-10-26 08:02:42]  *** Listing of results directory ***
[2025-10-26 08:02:42] total 399532
[2025-10-26 08:02:42] -rw-r--r-- 1 boinc boinc    557409 Oct 26 05:52 pilot3.tar.gz
[2025-10-26 08:02:42] -rwx------ 1 boinc boinc     36292 Oct 26 06:44 runpilot2-wrapper.sh
[2025-10-26 08:02:42] -rw-r--r-- 1 boinc boinc      5112 Oct 26 06:44 queuedata.json
[2025-10-26 08:02:42] -rw-r--r-- 1 boinc boinc       100 Oct 26 06:45 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-26 08:02:42] -rwxr-xr-x 1 boinc boinc      7986 Oct 26 06:45 run_atlas
[2025-10-26 08:02:42] -rw-r--r-- 1 boinc boinc       105 Oct 26 06:45 job.xml
[2025-10-26 08:02:42] -rw-r--r-- 1 boinc boinc      6665 Oct 26 06:45 init_data.xml
[2025-10-26 08:02:42] -rw-r--r-- 2 boinc boinc 233672960 Oct 26 06:45 EVNT.46964904._000182.pool.root.1
[2025-10-26 08:02:42] -rw-r--r-- 2 boinc boinc     15120 Oct 26 06:45 start_atlas.sh
[2025-10-26 08:02:42] drwxrwx--x 2 boinc boinc      4096 Oct 26 06:45 shared
[2025-10-26 08:02:42] -rw-r--r-- 2 boinc boinc    569672 Oct 26 06:45 input.tar.gz
[2025-10-26 08:02:42] -rw-r--r-- 1 boinc boinc         0 Oct 26 06:45 boinc_lockfile
[2025-10-26 08:02:42] -rw-r--r-- 1 boinc boinc      2558 Oct 26 06:45 pandaJob.out
[2025-10-26 08:02:42] -rw------- 1 boinc boinc    978581 Oct 26 06:46 agis_schedconf.cvmfs.json
[2025-10-26 08:02:42] -rw------- 1 boinc boinc   1560772 Oct 26 06:46 agis_ddmendpoints.agis.ALL.json
[2025-10-26 08:02:42] drwx------ 5 boinc boinc      4096 Oct 26 06:46 pilot3
[2025-10-26 08:02:42] -rw------- 1 boinc boinc 169575143 Oct 26 07:56 HITS.46964913._004729.pool.root.1
[2025-10-26 08:02:42] -rw-r--r-- 1 boinc boinc       528 Oct 26 07:56 boinc_task_state.xml
[2025-10-26 08:02:42] -rw------- 1 boinc boinc      1021 Oct 26 07:56 memory_monitor_summary.json
[2025-10-26 08:02:42] -rw------- 1 boinc boinc    362694 Oct 26 07:57 log.46964913._004729.job.log.tgz.1
[2025-10-26 08:02:42] -rw------- 1 boinc boinc        95 Oct 26 07:57 pilot_heartbeat.json
[2025-10-26 08:02:42] -rw------- 1 boinc boinc      7778 Oct 26 07:57 heartbeat.json
[2025-10-26 08:02:42] -rw------- 1 boinc boinc      4898 Oct 26 07:58 pilotlog.txt
[2025-10-26 08:02:42] -rw------- 1 boinc boinc    617128 Oct 26 07:58 log.46964913._004729.job.log.1
[2025-10-26 08:02:42] -rw------- 1 boinc boinc       357 Oct 26 07:58 output.list
[2025-10-26 08:02:42] -rw-r--r-- 1 boinc boinc       620 Oct 26 07:58 runtime_log
[2025-10-26 08:02:42] -rw------- 1 boinc boinc   1003520 Oct 26 07:58 result.tar.gz
[2025-10-26 08:02:42] -rw-r--r-- 1 boinc boinc      8764 Oct 26 07:58 runtime_log.err
[2025-10-26 08:02:42] -rw------- 1 boinc boinc       664 Oct 26 07:58 kkDNDmGj8W8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmfXEODmTqwqSo.diag
[2025-10-26 08:02:42] -rw-r--r-- 1 boinc boinc        26 Oct 26 08:02 wrapper_checkpoint.txt
[2025-10-26 08:02:42] -rw-r--r-- 1 boinc boinc      8192 Oct 26 08:02 boinc_mmap_file
[2025-10-26 08:02:42] -rw-r--r-- 1 boinc boinc     22464 Oct 26 08:02 stderr.txt
[2025-10-26 08:02:42] HITS file was successfully produced:
[2025-10-26 08:02:42] -rw------- 1 boinc boinc 169575143 Oct 26 07:56 shared/HITS.pool.root.1
[2025-10-26 08:02:42]  *** Contents of shared directory: ***
[2025-10-26 08:02:42] total 395368
[2025-10-26 08:02:42] -rw-r--r-- 2 boinc boinc 233672960 Oct 26 06:45 ATLAS.root_0
[2025-10-26 08:02:42] -rw-r--r-- 2 boinc boinc     15120 Oct 26 06:45 start_atlas.sh
[2025-10-26 08:02:42] -rw-r--r-- 2 boinc boinc    569672 Oct 26 06:45 input.tar.gz
[2025-10-26 08:02:42] -rw------- 1 boinc boinc 169575143 Oct 26 07:56 HITS.pool.root.1
[2025-10-26 08:02:42] -rw------- 1 boinc boinc   1003520 Oct 26 07:58 result.tar.gz
08:02:44 (526592): run_atlas exited; CPU time 45441.936943
08:02:44 (526592): called boinc_finish(0)

</stderr_txt>
]]>

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