Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
02:15:29 (3884075): wrapper (7.7.26015): starting
02:15:29 (3884075): wrapper: running run_atlas (--nthreads 4)
[2025-10-26 02:15:29] Arguments: --nthreads 4
[2025-10-26 02:15:29] Threads: 4
[2025-10-26 02:15:29] Checking for CVMFS
[2025-10-26 02:15:29] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-26 02:15:29] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-26 02:15:29] Running cvmfs_config stat atlas.cern.ch
[2025-10-26 02:15:30] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-26 02:15:30] 2.9.2.0 1545554 7313 98356 152135 2 57 31441634 36864000 0 130560 0 6020986 99.990 269432 1058 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-10-26 02:15:30] CVMFS is ok
[2025-10-26 02:15:30] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-26 02:15:30] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-26 02:15:30] Further information can be found at the LHC@home message board.
[2025-10-26 02:15:30] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-26 02:15:30] Checking for apptainer binary...
[2025-10-26 02:15:30] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-26 02:15:30] Running /usr/bin/apptainer --version
[2025-10-26 02:15:30] apptainer version 1.4.1-1.1
[2025-10-26 02:15:30] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-26 02:15:30] thA309
[2025-10-26 02:15:30] apptainer works
[2025-10-26 02:15:30] Set ATHENA_PROC_NUMBER=4
[2025-10-26 02:15:30] Set ATHENA_CORE_NUMBER=4
[2025-10-26 02:15:30] Starting ATLAS job with PandaID=6854790794
[2025-10-26 02:15:30] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-26 03:34:49]  *** The last 200 lines of the pilot log: ***
[2025-10-26 03:34:49] 2025-10-26 02:34:20,506 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-26 03:34:49] 2025-10-26 02:34:20,506 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-26 03:34:49] 2025-10-26 02:34:20,506 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-26 03:34:49] 2025-10-26 02:34:20,506 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-26 03:34:49] 2025-10-26 02:34:20,506 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-26 03:34:49] 2025-10-26 02:34:20,506 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-26 03:34:49] 2025-10-26 02:34:20,506 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-26 03:34:49] 2025-10-26 02:34:20,506 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-26 03:34:49] 2025-10-26 02:34:20,506 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-26 03:34:49] 2025-10-26 02:34:20,506 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-26 03:34:49] 2025-10-26 02:34:20,506 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-26 03:34:49] 2025-10-26 02:34:20,506 | INFO     | job 6854790794 has completed (purged errors)
[2025-10-26 03:34:49] 2025-10-26 02:34:20,506 | INFO     | overall cleanup function is called
[2025-10-26 03:34:49] 2025-10-26 02:34:21,513 | INFO     | --- collectZombieJob: --- 10, [3894420]
[2025-10-26 03:34:49] 2025-10-26 02:34:21,513 | INFO     | zombie collector waiting for pid 3894420
[2025-10-26 03:34:49] 2025-10-26 02:34:21,513 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-26 03:34:49] 2025-10-26 02:34:21,513 | INFO     | collected zombie processes
[2025-10-26 03:34:49] 2025-10-26 02:34:21,513 | INFO     | will attempt to kill all subprocesses of pid=3894420
[2025-10-26 03:34:49] 2025-10-26 02:34:21,564 | INFO     | process IDs to be killed: [3894420] (in reverse order)
[2025-10-26 03:34:49] 2025-10-26 02:34:21,601 | WARNING  | found no corresponding commands to process id(s)
[2025-10-26 03:34:49] 2025-10-26 02:34:21,601 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-26 03:34:49] 2025-10-26 02:34:21,603 | INFO     | did not find any defunct processes belonging to 3894420
[2025-10-26 03:34:49] 2025-10-26 02:34:21,604 | INFO     | did not find any defunct processes belonging to 3894420
[2025-10-26 03:34:49] 2025-10-26 02:34:21,604 | INFO     | ready for new job
[2025-10-26 03:34:49] 2025-10-26 02:34:21,604 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-26 03:34:49] 2025-10-26 02:34:21,605 | INFO     | ***************************************
[2025-10-26 03:34:49] 2025-10-26 02:34:21,605 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-26 03:34:49] 2025-10-26 02:34:21,605 | INFO     | ***************************************
[2025-10-26 03:34:49] 2025-10-26 02:34:21,605 | INFO     | 
[2025-10-26 03:34:49] 2025-10-26 02:34:21,606 | INFO     | architecture information:
[2025-10-26 03:34:49] 2025-10-26 02:34:21,606 | INFO     | executing command: cat /etc/os-release
[2025-10-26 03:34:49] 2025-10-26 02:34:21,622 | INFO     | cat /etc/os-release:
[2025-10-26 03:34:49] NAME="CentOS Linux"
[2025-10-26 03:34:49] VERSION="7 (Core)"
[2025-10-26 03:34:49] ID="centos"
[2025-10-26 03:34:49] ID_LIKE="rhel fedora"
[2025-10-26 03:34:49] VERSION_ID="7"
[2025-10-26 03:34:49] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-26 03:34:49] ANSI_COLOR="0;31"
[2025-10-26 03:34:49] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-26 03:34:49] HOME_URL="https://www.centos.org/"
[2025-10-26 03:34:49] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-26 03:34:49] 
[2025-10-26 03:34:49] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-26 03:34:49] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-26 03:34:49] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-26 03:34:49] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-26 03:34:49] 
[2025-10-26 03:34:49] 2025-10-26 02:34:21,622 | INFO     | ***************************************
[2025-10-26 03:34:49] 2025-10-26 02:34:22,125 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-10-26 03:34:49] 2025-10-26 02:34:22,145 | INFO     | sufficient remaining disk space (229756633088 B)
[2025-10-26 03:34:49] 2025-10-26 02:34:22,145 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-26 03:34:49] 2025-10-26 02:34:22,145 | INFO     | current server update state: UPDATING_FINAL
[2025-10-26 03:34:49] 2025-10-26 02:34:22,145 | INFO     | update_server=False
[2025-10-26 03:34:49] 2025-10-26 02:34:22,145 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-26 03:34:49] 2025-10-26 02:34:22,145 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-10-26 03:34:49] 2025-10-26 02:34:22,146 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-26 03:34:49] 2025-10-26 02:34:22,146 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-26 03:34:49] 2025-10-26 02:34:22,146 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-26 03:34:49] 2025-10-26 02:34:22,146 | INFO     | found 0 job(s) in 20 queues
[2025-10-26 03:34:49] 2025-10-26 02:34:22,146 | INFO     | aborting loop
[2025-10-26 03:34:49] 2025-10-26 02:34:22,146 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-26 03:34:49] 2025-10-26 02:34:22,147 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-26 03:34:49] 2025-10-26 02:34:22,358 | INFO     | all job control threads have been joined
[2025-10-26 03:34:49] 2025-10-26 02:34:22,882 | INFO     | all data control threads have been joined
[2025-10-26 03:34:49] 2025-10-26 02:34:22,904 | INFO     | all payload control threads have been joined
[2025-10-26 03:34:49] 2025-10-26 02:34:23,122 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-26 03:34:49] 2025-10-26 02:34:23,151 | INFO     | [job] retrieve thread has finished
[2025-10-26 03:34:49] 2025-10-26 02:34:23,152 | INFO     | [job] queue monitor thread has finished
[2025-10-26 03:34:49] 2025-10-26 02:34:23,152 | INFO     | [job] job monitor thread has finished
[2025-10-26 03:34:49] 2025-10-26 02:34:23,160 | INFO     | [payload] execute_payloads thread has finished
[2025-10-26 03:34:49] 2025-10-26 02:34:23,177 | INFO     | [data] copytool_in thread has finished
[2025-10-26 03:34:49] 2025-10-26 02:34:23,364 | INFO     | [job] control thread has finished
[2025-10-26 03:34:49] 2025-10-26 02:34:23,681 | INFO     | [payload] failed_post thread has finished
[2025-10-26 03:34:49] 2025-10-26 02:34:23,888 | INFO     | [data] control thread has finished
[2025-10-26 03:34:49] 2025-10-26 02:34:23,910 | INFO     | [payload] control thread has finished
[2025-10-26 03:34:49] 2025-10-26 02:34:23,972 | INFO     | [job] validate thread has finished
[2025-10-26 03:34:49] 2025-10-26 02:34:24,091 | INFO     | [job] create_data_payload thread has finished
[2025-10-26 03:34:49] 2025-10-26 02:34:24,128 | INFO     | [payload] validate_pre thread has finished
[2025-10-26 03:34:49] 2025-10-26 02:34:24,184 | INFO     | [payload] validate_post thread has finished
[2025-10-26 03:34:49] 2025-10-26 02:34:25,128 | INFO     | [data] copytool_out thread has finished
[2025-10-26 03:34:49] 2025-10-26 02:34:26,153 | INFO     | [data] queue_monitor thread has finished
[2025-10-26 03:34:49] 2025-10-26 02:34:32,624 | INFO     | job.realtimelogging is not enabled
[2025-10-26 03:34:49] 2025-10-26 02:34:33,630 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-26 03:34:49] 2025-10-26 02:34:44,288 | INFO     | [monitor] cgroup control has ended
[2025-10-26 03:34:49] 2025-10-26 02:34:44,673 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139728322643776)>', '<ExcThread(monitor, started 139727541880576)>']
[2025-10-26 03:34:49] 2025-10-26 02:34:45,269 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-26 03:34:49] 2025-10-26 02:34:45,269 | INFO     | [monitor] control thread has ended
[2025-10-26 03:34:49] 2025-10-26 02:34:49,699 | INFO     | all workflow threads have been joined
[2025-10-26 03:34:49] 2025-10-26 02:34:49,699 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-26 03:34:49] 2025-10-26 02:34:49,700 | INFO     | traces error code: 0
[2025-10-26 03:34:49] 2025-10-26 02:34:49,700 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-26 03:34:49] 2025-10-26 02:34:49,783 [wrapper] ==== pilot stdout END ====
[2025-10-26 03:34:49] 2025-10-26 02:34:49,787 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-26 03:34:49] 2025-10-26 02:34:49,791 [wrapper] pilotpid: 3887872
[2025-10-26 03:34:49] 2025-10-26 02:34:49,795 [wrapper] Pilot exit status: 0
[2025-10-26 03:34:49] 2025-10-26 02:34:49,807 [wrapper] pandaids: 6854790794
[2025-10-26 03:34:49] 2025-10-26 02:34:49,831 [wrapper] cleanup supervisor_pilot 3906675 3887873
[2025-10-26 03:34:49] 2025-10-26 02:34:49,835 [wrapper] Test setup, not cleaning
[2025-10-26 03:34:49] 2025-10-26 02:34:49,839 [wrapper] apfmon messages muted
[2025-10-26 03:34:49] 2025-10-26 02:34:49,843 [wrapper] ==== wrapper stdout END ====
[2025-10-26 03:34:49] 2025-10-26 02:34:49,847 [wrapper] ==== wrapper stderr END ====
[2025-10-26 03:34:49]  *** Error codes and diagnostics ***
[2025-10-26 03:34:49]     "exeErrorCode": 0,
[2025-10-26 03:34:49]     "exeErrorDiag": "",
[2025-10-26 03:34:49]     "pilotErrorCode": 0,
[2025-10-26 03:34:49]     "pilotErrorDiag": "",
[2025-10-26 03:34:49]  *** Listing of results directory ***
[2025-10-26 03:34:49] total 432836
[2025-10-26 03:34:49] -rw-r--r-- 1 boinc boinc    557409 Oct 23 16:31 pilot3.tar.gz
[2025-10-26 03:34:49] -rw-r--r-- 1 boinc boinc      5112 Oct 23 17:18 queuedata.json
[2025-10-26 03:34:49] -rwx------ 1 boinc boinc     36292 Oct 23 17:20 runpilot2-wrapper.sh
[2025-10-26 03:34:49] -rw-r--r-- 1 boinc boinc       100 Oct 26 02:15 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-26 03:34:49] -rwxr-xr-x 1 boinc boinc      7986 Oct 26 02:15 run_atlas
[2025-10-26 03:34:49] -rw-r--r-- 1 boinc boinc       105 Oct 26 02:15 job.xml
[2025-10-26 03:34:49] -rw-r--r-- 2 boinc boinc 227516534 Oct 26 02:15 EVNT.46771634._004251.pool.root.1
[2025-10-26 03:34:49] -rw-r--r-- 2 boinc boinc    569688 Oct 26 02:15 input.tar.gz
[2025-10-26 03:34:49] -rw-r--r-- 2 boinc boinc     15120 Oct 26 02:15 start_atlas.sh
[2025-10-26 03:34:49] drwxrwx--x 2 boinc boinc      4096 Oct 26 02:15 shared
[2025-10-26 03:34:49] -rw-r--r-- 1 boinc boinc         0 Oct 26 02:15 boinc_setup_complete
[2025-10-26 03:34:49] -rw-r--r-- 1 boinc boinc      6377 Oct 26 02:15 init_data.xml
[2025-10-26 03:34:49] -rw-r--r-- 1 boinc boinc         0 Oct 26 02:15 boinc_lockfile
[2025-10-26 03:34:49] -rw-r--r-- 1 boinc boinc      2562 Oct 26 02:15 pandaJob.out
[2025-10-26 03:34:49] -rw------- 1 boinc boinc    978581 Oct 26 02:15 agis_schedconf.cvmfs.json
[2025-10-26 03:34:49] -rw------- 1 boinc boinc   1560772 Oct 26 02:15 agis_ddmendpoints.agis.ALL.json
[2025-10-26 03:34:49] drwx------ 5 boinc boinc      4096 Oct 26 02:15 pilot3
[2025-10-26 03:34:49] -rw------- 1 boinc boinc 209904410 Oct 26 03:33 HITS.46771637._107339.pool.root.1
[2025-10-26 03:34:49] -rw-r--r-- 1 boinc boinc       529 Oct 26 03:34 boinc_task_state.xml
[2025-10-26 03:34:49] -rw------- 1 boinc boinc        95 Oct 26 03:34 pilot_heartbeat.json
[2025-10-26 03:34:49] -rw------- 1 boinc boinc      1032 Oct 26 03:34 memory_monitor_summary.json
[2025-10-26 03:34:49] -rw------- 1 boinc boinc    254856 Oct 26 03:34 log.46771637._107339.job.log.tgz.1
[2025-10-26 03:34:49] -rw------- 1 boinc boinc      7760 Oct 26 03:34 heartbeat.json
[2025-10-26 03:34:49] -rw-r--r-- 1 boinc boinc      8192 Oct 26 03:34 boinc_mmap_file
[2025-10-26 03:34:49] -rw-r--r-- 1 boinc boinc        27 Oct 26 03:34 wrapper_checkpoint.txt
[2025-10-26 03:34:49] -rw------- 1 boinc boinc      4628 Oct 26 03:34 pilotlog.txt
[2025-10-26 03:34:49] -rw------- 1 boinc boinc    695086 Oct 26 03:34 log.46771637._107339.job.log.1
[2025-10-26 03:34:49] -rw------- 1 boinc boinc       357 Oct 26 03:34 output.list
[2025-10-26 03:34:49] -rw-r--r-- 1 boinc boinc       620 Oct 26 03:34 runtime_log
[2025-10-26 03:34:49] -rw------- 1 boinc boinc    972800 Oct 26 03:34 result.tar.gz
[2025-10-26 03:34:49] -rw-r--r-- 1 boinc boinc      8777 Oct 26 03:34 runtime_log.err
[2025-10-26 03:34:49] -rw------- 1 boinc boinc       658 Oct 26 03:34 nqOODmpHCW8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmq28NDmU6qBtn.diag
[2025-10-26 03:34:49] -rw-r--r-- 1 boinc boinc     11950 Oct 26 03:34 stderr.txt
[2025-10-26 03:34:49] HITS file was successfully produced:
[2025-10-26 03:34:49] -rw------- 1 boinc boinc 209904410 Oct 26 03:33 shared/HITS.pool.root.1
[2025-10-26 03:34:49]  *** Contents of shared directory: ***
[2025-10-26 03:34:49] total 428712
[2025-10-26 03:34:49] -rw-r--r-- 2 boinc boinc 227516534 Oct 26 02:15 ATLAS.root_0
[2025-10-26 03:34:49] -rw-r--r-- 2 boinc boinc    569688 Oct 26 02:15 input.tar.gz
[2025-10-26 03:34:49] -rw-r--r-- 2 boinc boinc     15120 Oct 26 02:15 start_atlas.sh
[2025-10-26 03:34:49] -rw------- 1 boinc boinc 209904410 Oct 26 03:33 HITS.pool.root.1
[2025-10-26 03:34:49] -rw------- 1 boinc boinc    972800 Oct 26 03:34 result.tar.gz
03:35:11 (3884075): run_atlas exited; CPU time 17804.847150
03:35:11 (3884075): called boinc_finish(0)

</stderr_txt>
]]>

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