Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
02:11:46 (622210): wrapper (7.7.26015): starting
02:11:46 (622210): wrapper: running run_atlas (--nthreads 4)
[2025-10-26 02:11:46] Arguments: --nthreads 4
[2025-10-26 02:11:46] Threads: 4
[2025-10-26 02:11:46] Checking for CVMFS
[2025-10-26 02:11:46] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-26 02:11:46] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-26 02:11:46] Running cvmfs_config stat atlas.cern.ch
[2025-10-26 02:11:46] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-26 02:11:46] 2.9.2.0 2150638 7321 96312 152134 1 57 25117966 36864000 0 130560 0 6990968 99.992 270248 1118 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-10-26 02:11:46] CVMFS is ok
[2025-10-26 02:11:46] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-26 02:11:46] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-26 02:11:46] Further information can be found at the LHC@home message board.
[2025-10-26 02:11:46] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-26 02:11:46] Checking for apptainer binary...
[2025-10-26 02:11:46] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-26 02:11:46] Running /usr/bin/apptainer --version
[2025-10-26 02:11:46] apptainer version 1.4.1-1.1
[2025-10-26 02:11:46] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-26 02:11:46] thA315b
[2025-10-26 02:11:46] apptainer works
[2025-10-26 02:11:46] Set ATHENA_PROC_NUMBER=4
[2025-10-26 02:11:46] Set ATHENA_CORE_NUMBER=4
[2025-10-26 02:11:46] Starting ATLAS job with PandaID=6854930289
[2025-10-26 02:11:46] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-26 02:18:04]  *** The last 200 lines of the pilot log: ***
[2025-10-26 02:18:04] 2025-10-26 01:17:27,880 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-26 02:18:04] 2025-10-26 01:17:27,880 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-26 02:18:04] 2025-10-26 01:17:27,880 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-26 02:18:04] 2025-10-26 01:17:27,880 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-26 02:18:04] 2025-10-26 01:17:27,880 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-26 02:18:04] 2025-10-26 01:17:27,880 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-26 02:18:04] 2025-10-26 01:17:27,881 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-26 02:18:04] 2025-10-26 01:17:27,881 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-26 02:18:04] 2025-10-26 01:17:27,881 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-26 02:18:04] 2025-10-26 01:17:27,881 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-26 02:18:04] 2025-10-26 01:17:27,881 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-26 02:18:04] 2025-10-26 01:17:27,881 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-26 02:18:04] 2025-10-26 01:17:27,881 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-26 02:18:04] 2025-10-26 01:17:27,881 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-26 02:18:04] 2025-10-26 01:17:27,881 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-26 02:18:04] 2025-10-26 01:17:27,881 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-26 02:18:04] 2025-10-26 01:17:27,881 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-26 02:18:04] 2025-10-26 01:17:27,881 | INFO     | job 6854930289 has completed (purged errors)
[2025-10-26 02:18:04] 2025-10-26 01:17:27,881 | INFO     | overall cleanup function is called
[2025-10-26 02:18:04] 2025-10-26 01:17:28,885 | INFO     | --- collectZombieJob: --- 10, [632559]
[2025-10-26 02:18:04] 2025-10-26 01:17:28,885 | INFO     | zombie collector waiting for pid 632559
[2025-10-26 02:18:04] 2025-10-26 01:17:28,885 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-26 02:18:04] 2025-10-26 01:17:28,886 | INFO     | collected zombie processes
[2025-10-26 02:18:04] 2025-10-26 01:17:28,886 | INFO     | will attempt to kill all subprocesses of pid=632559
[2025-10-26 02:18:04] 2025-10-26 01:17:28,930 | INFO     | process IDs to be killed: [632559] (in reverse order)
[2025-10-26 02:18:04] 2025-10-26 01:17:28,957 | WARNING  | found no corresponding commands to process id(s)
[2025-10-26 02:18:04] 2025-10-26 01:17:28,957 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-26 02:18:04] 2025-10-26 01:17:28,959 | INFO     | did not find any defunct processes belonging to 632559
[2025-10-26 02:18:04] 2025-10-26 01:17:28,960 | INFO     | did not find any defunct processes belonging to 632559
[2025-10-26 02:18:04] 2025-10-26 01:17:28,960 | INFO     | ready for new job
[2025-10-26 02:18:04] 2025-10-26 01:17:28,960 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-26 02:18:04] 2025-10-26 01:17:28,961 | INFO     | ***************************************
[2025-10-26 02:18:04] 2025-10-26 01:17:28,961 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-26 02:18:04] 2025-10-26 01:17:28,961 | INFO     | ***************************************
[2025-10-26 02:18:04] 2025-10-26 01:17:28,961 | INFO     | 
[2025-10-26 02:18:04] 2025-10-26 01:17:28,961 | INFO     | architecture information:
[2025-10-26 02:18:04] 2025-10-26 01:17:28,961 | INFO     | executing command: cat /etc/os-release
[2025-10-26 02:18:04] 2025-10-26 01:17:28,971 | INFO     | cat /etc/os-release:
[2025-10-26 02:18:04] NAME="CentOS Linux"
[2025-10-26 02:18:04] VERSION="7 (Core)"
[2025-10-26 02:18:04] ID="centos"
[2025-10-26 02:18:04] ID_LIKE="rhel fedora"
[2025-10-26 02:18:04] VERSION_ID="7"
[2025-10-26 02:18:04] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-26 02:18:04] ANSI_COLOR="0;31"
[2025-10-26 02:18:04] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-26 02:18:04] HOME_URL="https://www.centos.org/"
[2025-10-26 02:18:04] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-26 02:18:04] 
[2025-10-26 02:18:04] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-26 02:18:04] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-26 02:18:04] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-26 02:18:04] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-26 02:18:04] 
[2025-10-26 02:18:04] 2025-10-26 01:17:28,971 | INFO     | ***************************************
[2025-10-26 02:18:04] 2025-10-26 01:17:29,474 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-10-26 02:18:04] 2025-10-26 01:17:29,488 | INFO     | sufficient remaining disk space (336277274624 B)
[2025-10-26 02:18:04] 2025-10-26 01:17:29,489 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-26 02:18:04] 2025-10-26 01:17:29,489 | INFO     | current server update state: UPDATING_FINAL
[2025-10-26 02:18:04] 2025-10-26 01:17:29,489 | INFO     | update_server=False
[2025-10-26 02:18:04] 2025-10-26 01:17:29,489 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-26 02:18:04] 2025-10-26 01:17:29,489 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-26 02:18:04] 2025-10-26 01:17:29,949 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-26 02:18:04] 2025-10-26 01:17:29,949 | INFO     | aborting loop
[2025-10-26 02:18:04] 2025-10-26 01:17:30,285 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-26 02:18:04] 2025-10-26 01:17:30,414 | INFO     | all data control threads have been joined
[2025-10-26 02:18:04] 2025-10-26 01:17:30,493 | INFO     | [job] queue monitor thread has finished
[2025-10-26 02:18:04] 2025-10-26 01:17:30,494 | INFO     | [job] retrieve thread has finished
[2025-10-26 02:18:04] 2025-10-26 01:17:30,793 | INFO     | all payload control threads have been joined
[2025-10-26 02:18:04] 2025-10-26 01:17:30,918 | INFO     | all job control threads have been joined
[2025-10-26 02:18:04] 2025-10-26 01:17:30,941 | INFO     | [data] copytool_in thread has finished
[2025-10-26 02:18:04] 2025-10-26 01:17:30,955 | INFO     | [job] job monitor thread has finished
[2025-10-26 02:18:04] 2025-10-26 01:17:30,961 | INFO     | [payload] execute_payloads thread has finished
[2025-10-26 02:18:04] 2025-10-26 01:17:31,026 | INFO     | [payload] failed_post thread has finished
[2025-10-26 02:18:04] 2025-10-26 01:17:31,162 | INFO     | [job] validate thread has finished
[2025-10-26 02:18:04] 2025-10-26 01:17:31,165 | INFO     | [job] create_data_payload thread has finished
[2025-10-26 02:18:04] 2025-10-26 01:17:31,301 | INFO     | [payload] validate_pre thread has finished
[2025-10-26 02:18:04] 2025-10-26 01:17:31,420 | INFO     | [data] control thread has finished
[2025-10-26 02:18:04] 2025-10-26 01:17:31,694 | INFO     | [payload] validate_post thread has finished
[2025-10-26 02:18:04] 2025-10-26 01:17:31,799 | INFO     | [payload] control thread has finished
[2025-10-26 02:18:04] 2025-10-26 01:17:31,924 | INFO     | [job] control thread has finished
[2025-10-26 02:18:04] 2025-10-26 01:17:32,291 | INFO     | [data] copytool_out thread has finished
[2025-10-26 02:18:04] 2025-10-26 01:17:32,316 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-26 02:18:04] 2025-10-26 01:17:36,323 | INFO     | [data] queue_monitor thread has finished
[2025-10-26 02:18:04] 2025-10-26 01:17:40,314 | INFO     | job.realtimelogging is not enabled
[2025-10-26 02:18:04] 2025-10-26 01:17:41,320 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-26 02:18:04] 2025-10-26 01:17:58,846 | INFO     | [monitor] cgroup control has ended
[2025-10-26 02:18:04] 2025-10-26 01:17:59,231 | INFO     | PID=625987 has CPU usage=1.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-10-26 02:18:04] 2025-10-26 01:17:59,231 | INFO     | found 0 job(s) in 20 queues
[2025-10-26 02:18:04] 2025-10-26 01:17:59,231 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-26 02:18:04] 2025-10-26 01:17:59,231 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-26 02:18:04] 2025-10-26 01:17:59,577 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140461373785920)>', '<ExcThread(monitor, started 140460639110912)>']
[2025-10-26 02:18:04] 2025-10-26 01:18:00,237 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-26 02:18:04] 2025-10-26 01:18:00,237 | INFO     | [monitor] control thread has ended
[2025-10-26 02:18:04] 2025-10-26 01:18:04,581 | INFO     | all workflow threads have been joined
[2025-10-26 02:18:04] 2025-10-26 01:18:04,582 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-26 02:18:04] 2025-10-26 01:18:04,582 | INFO     | traces error code: 0
[2025-10-26 02:18:04] 2025-10-26 01:18:04,583 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-26 02:18:04] 2025-10-26 01:18:04,639 [wrapper] ==== pilot stdout END ====
[2025-10-26 02:18:04] 2025-10-26 01:18:04,641 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-26 02:18:04] 2025-10-26 01:18:04,644 [wrapper] pilotpid: 625987
[2025-10-26 02:18:04] 2025-10-26 01:18:04,647 [wrapper] Pilot exit status: 0
[2025-10-26 02:18:04] 2025-10-26 01:18:04,654 [wrapper] pandaids: 6854930289
[2025-10-26 02:18:04] 2025-10-26 01:18:04,673 [wrapper] cleanup supervisor_pilot  642080 625988
[2025-10-26 02:18:04] 2025-10-26 01:18:04,675 [wrapper] Test setup, not cleaning
[2025-10-26 02:18:04] 2025-10-26 01:18:04,678 [wrapper] apfmon messages muted
[2025-10-26 02:18:04] 2025-10-26 01:18:04,681 [wrapper] ==== wrapper stdout END ====
[2025-10-26 02:18:04] 2025-10-26 01:18:04,683 [wrapper] ==== wrapper stderr END ====
[2025-10-26 02:18:04]  *** Error codes and diagnostics ***
[2025-10-26 02:18:04]     "exeErrorCode": 0,
[2025-10-26 02:18:04]     "exeErrorDiag": "",
[2025-10-26 02:18:04]     "pilotErrorCode": 0,
[2025-10-26 02:18:04]     "pilotErrorDiag": "",
[2025-10-26 02:18:04]  *** Listing of results directory ***
[2025-10-26 02:18:04] total 427036
[2025-10-26 02:18:04] -rw-r--r-- 1 boinc boinc    557409 Oct 23 18:24 pilot3.tar.gz
[2025-10-26 02:18:04] -rwx------ 1 boinc boinc     36292 Oct 23 19:25 runpilot2-wrapper.sh
[2025-10-26 02:18:04] -rw-r--r-- 1 boinc boinc      5112 Oct 23 19:25 queuedata.json
[2025-10-26 02:18:04] -rw-r--r-- 1 boinc boinc       100 Oct 26 02:11 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-26 02:18:04] -rwxr-xr-x 1 boinc boinc      7986 Oct 26 02:11 run_atlas
[2025-10-26 02:18:04] -rw-r--r-- 1 boinc boinc       105 Oct 26 02:11 job.xml
[2025-10-26 02:18:04] -rw-r--r-- 2 boinc boinc 228192466 Oct 26 02:11 EVNT.46771634._004315.pool.root.1
[2025-10-26 02:18:04] -rw-r--r-- 2 boinc boinc    569681 Oct 26 02:11 input.tar.gz
[2025-10-26 02:18:04] -rw-r--r-- 2 boinc boinc     15120 Oct 26 02:11 start_atlas.sh
[2025-10-26 02:18:04] drwxrwx--x 2 boinc boinc      4096 Oct 26 02:11 shared
[2025-10-26 02:18:04] -rw-r--r-- 1 boinc boinc         0 Oct 26 02:11 boinc_setup_complete
[2025-10-26 02:18:04] -rw-r--r-- 1 boinc boinc      6443 Oct 26 02:11 init_data.xml
[2025-10-26 02:18:04] -rw-r--r-- 1 boinc boinc         0 Oct 26 02:11 boinc_lockfile
[2025-10-26 02:18:04] -rw-r--r-- 1 boinc boinc      2562 Oct 26 02:11 pandaJob.out
[2025-10-26 02:18:04] -rw------- 1 boinc boinc    978589 Oct 26 02:11 agis_schedconf.cvmfs.json
[2025-10-26 02:18:04] -rw------- 1 boinc boinc   1560772 Oct 26 02:11 agis_ddmendpoints.agis.ALL.json
[2025-10-26 02:18:04] drwx------ 5 boinc boinc      4096 Oct 26 02:11 pilot3
[2025-10-26 02:18:04] -rw------- 1 boinc boinc 203509360 Oct 26 02:17 HITS.46771637._108952.pool.root.1
[2025-10-26 02:18:04] -rw-r--r-- 1 boinc boinc       529 Oct 26 02:17 boinc_task_state.xml
[2025-10-26 02:18:04] -rw------- 1 boinc boinc        95 Oct 26 02:17 pilot_heartbeat.json
[2025-10-26 02:18:04] -rw------- 1 boinc boinc      1015 Oct 26 02:17 memory_monitor_summary.json
[2025-10-26 02:18:04] -rw------- 1 boinc boinc    255880 Oct 26 02:17 log.46771637._108952.job.log.tgz.1
[2025-10-26 02:18:04] -rw------- 1 boinc boinc      7747 Oct 26 02:17 heartbeat.json
[2025-10-26 02:18:04] -rw-r--r-- 1 boinc boinc        27 Oct 26 02:17 wrapper_checkpoint.txt
[2025-10-26 02:18:04] -rw-r--r-- 1 boinc boinc      8192 Oct 26 02:17 boinc_mmap_file
[2025-10-26 02:18:04] -rw------- 1 boinc boinc      4823 Oct 26 02:18 pilotlog.txt
[2025-10-26 02:18:04] -rw------- 1 boinc boinc    588262 Oct 26 02:18 log.46771637._108952.job.log.1
[2025-10-26 02:18:04] -rw------- 1 boinc boinc       357 Oct 26 02:18 output.list
[2025-10-26 02:18:04] -rw-r--r-- 1 boinc boinc       620 Oct 26 02:18 runtime_log
[2025-10-26 02:18:04] -rw------- 1 boinc boinc    860160 Oct 26 02:18 result.tar.gz
[2025-10-26 02:18:04] -rw-r--r-- 1 boinc boinc      8782 Oct 26 02:18 runtime_log.err
[2025-10-26 02:18:04] -rw------- 1 boinc boinc       659 Oct 26 02:18 BvYNDmbFEW8n9Rq4apOajLDm4fhM0noT9bVof3QYDmQqjMDmNbkcHm.diag
[2025-10-26 02:18:04] -rw-r--r-- 1 boinc boinc     12633 Oct 26 02:18 stderr.txt
[2025-10-26 02:18:04] HITS file was successfully produced:
[2025-10-26 02:18:04] -rw------- 1 boinc boinc 203509360 Oct 26 02:17 shared/HITS.pool.root.1
[2025-10-26 02:18:04]  *** Contents of shared directory: ***
[2025-10-26 02:18:04] total 423012
[2025-10-26 02:18:04] -rw-r--r-- 2 boinc boinc 228192466 Oct 26 02:11 ATLAS.root_0
[2025-10-26 02:18:04] -rw-r--r-- 2 boinc boinc    569681 Oct 26 02:11 input.tar.gz
[2025-10-26 02:18:04] -rw-r--r-- 2 boinc boinc     15120 Oct 26 02:11 start_atlas.sh
[2025-10-26 02:18:04] -rw------- 1 boinc boinc 203509360 Oct 26 02:17 HITS.pool.root.1
[2025-10-26 02:18:04] -rw------- 1 boinc boinc    860160 Oct 26 02:18 result.tar.gz
02:18:06 (622210): run_atlas exited; CPU time 14786.835971
02:18:06 (622210): called boinc_finish(0)

</stderr_txt>
]]>

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