Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
00:20:47 (2035495): wrapper (7.7.26015): starting
00:20:47 (2035495): wrapper: running run_atlas (--nthreads 4)
[2025-10-26 00:20:47] Arguments: --nthreads 4
[2025-10-26 00:20:47] Threads: 4
[2025-10-26 00:20:47] Checking for CVMFS
[2025-10-26 00:20:47] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-26 00:20:47] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-26 00:20:47] Running cvmfs_config stat atlas.cern.ch
[2025-10-26 00:20:47] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-26 00:20:47] 2.9.2.0 3052 6240 98676 152133 1 56 32247603 36864001 0 130560 0 5280487 99.990 237028 925 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-10-26 00:20:47] CVMFS is ok
[2025-10-26 00:20:47] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-26 00:20:47] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-26 00:20:47] Further information can be found at the LHC@home message board.
[2025-10-26 00:20:47] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-26 00:20:47] Checking for apptainer binary...
[2025-10-26 00:20:47] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-26 00:20:47] Running /usr/bin/apptainer --version
[2025-10-26 00:20:47] apptainer version 1.4.1-1.1
[2025-10-26 00:20:47] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-26 00:20:47] thA334
[2025-10-26 00:20:47] apptainer works
[2025-10-26 00:20:47] Set ATHENA_PROC_NUMBER=4
[2025-10-26 00:20:47] Set ATHENA_CORE_NUMBER=4
[2025-10-26 00:20:47] Starting ATLAS job with PandaID=6856727377
[2025-10-26 00:20:47] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-26 01:36:09]  *** The last 200 lines of the pilot log: ***
[2025-10-26 01:36:09] 2025-10-25 23:35:36,728 | INFO     | job 6856727377 has completed (purged errors)
[2025-10-26 01:36:09] 2025-10-25 23:35:36,728 | INFO     | overall cleanup function is called
[2025-10-26 01:36:09] 2025-10-25 23:35:37,735 | INFO     | --- collectZombieJob: --- 10, [2045834]
[2025-10-26 01:36:09] 2025-10-25 23:35:37,735 | INFO     | zombie collector waiting for pid 2045834
[2025-10-26 01:36:09] 2025-10-25 23:35:37,735 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-26 01:36:09] 2025-10-25 23:35:37,735 | INFO     | collected zombie processes
[2025-10-26 01:36:09] 2025-10-25 23:35:37,735 | INFO     | will attempt to kill all subprocesses of pid=2045834
[2025-10-26 01:36:09] 2025-10-25 23:35:37,780 | INFO     | process IDs to be killed: [2045834] (in reverse order)
[2025-10-26 01:36:09] 2025-10-25 23:35:37,811 | WARNING  | found no corresponding commands to process id(s)
[2025-10-26 01:36:09] 2025-10-25 23:35:37,811 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-26 01:36:09] 2025-10-25 23:35:37,813 | INFO     | did not find any defunct processes belonging to 2045834
[2025-10-26 01:36:09] 2025-10-25 23:35:37,814 | INFO     | did not find any defunct processes belonging to 2045834
[2025-10-26 01:36:09] 2025-10-25 23:35:37,814 | INFO     | ready for new job
[2025-10-26 01:36:09] 2025-10-25 23:35:37,814 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-26 01:36:09] 2025-10-25 23:35:37,815 | INFO     | ***************************************
[2025-10-26 01:36:09] 2025-10-25 23:35:37,815 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-26 01:36:09] 2025-10-25 23:35:37,815 | INFO     | ***************************************
[2025-10-26 01:36:09] 2025-10-25 23:35:37,815 | INFO     | 
[2025-10-26 01:36:09] 2025-10-25 23:35:37,816 | INFO     | architecture information:
[2025-10-26 01:36:09] 2025-10-25 23:35:37,816 | INFO     | executing command: cat /etc/os-release
[2025-10-26 01:36:09] 2025-10-25 23:35:37,829 | INFO     | cat /etc/os-release:
[2025-10-26 01:36:09] NAME="CentOS Linux"
[2025-10-26 01:36:09] VERSION="7 (Core)"
[2025-10-26 01:36:09] ID="centos"
[2025-10-26 01:36:09] ID_LIKE="rhel fedora"
[2025-10-26 01:36:09] VERSION_ID="7"
[2025-10-26 01:36:09] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-26 01:36:09] ANSI_COLOR="0;31"
[2025-10-26 01:36:09] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-26 01:36:09] HOME_URL="https://www.centos.org/"
[2025-10-26 01:36:09] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-26 01:36:09] 
[2025-10-26 01:36:09] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-26 01:36:09] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-26 01:36:09] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-26 01:36:09] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-26 01:36:09] 
[2025-10-26 01:36:09] 2025-10-25 23:35:37,829 | INFO     | ***************************************
[2025-10-26 01:36:09] 2025-10-25 23:35:38,332 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-10-26 01:36:09] 2025-10-25 23:35:38,349 | INFO     | sufficient remaining disk space (228436475904 B)
[2025-10-26 01:36:09] 2025-10-25 23:35:38,350 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-26 01:36:09] 2025-10-25 23:35:38,350 | INFO     | current server update state: UPDATING_FINAL
[2025-10-26 01:36:09] 2025-10-25 23:35:38,350 | INFO     | update_server=False
[2025-10-26 01:36:09] 2025-10-25 23:35:38,350 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-26 01:36:09] 2025-10-25 23:35:38,350 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-26 01:36:09] 2025-10-25 23:35:38,350 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-26 01:36:09] 2025-10-25 23:35:38,422 | INFO     | all job control threads have been joined
[2025-10-26 01:36:09] 2025-10-25 23:35:38,594 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-10-26 01:36:09] 2025-10-25 23:35:38,594 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-10-26 01:36:09] 2025-10-25 23:35:38,594 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-26 01:36:09] 2025-10-25 23:35:38,594 | INFO     | will abort loop
[2025-10-26 01:36:09] 2025-10-25 23:35:38,903 | INFO     | all payload control threads have been joined
[2025-10-26 01:36:09] 2025-10-25 23:35:39,019 | INFO     | all data control threads have been joined
[2025-10-26 01:36:09] 2025-10-25 23:35:39,356 | INFO     | [job] retrieve thread has finished
[2025-10-26 01:36:09] 2025-10-25 23:35:39,356 | INFO     | [job] queue monitor thread has finished
[2025-10-26 01:36:09] 2025-10-25 23:35:39,367 | INFO     | [payload] validate_post thread has finished
[2025-10-26 01:36:09] 2025-10-25 23:35:39,428 | INFO     | [job] control thread has finished
[2025-10-26 01:36:09] 2025-10-25 23:35:39,508 | INFO     | [payload] validate_pre thread has finished
[2025-10-26 01:36:09] 2025-10-25 23:35:39,600 | INFO     | [job] job monitor thread has finished
[2025-10-26 01:36:09] 2025-10-25 23:35:39,689 | INFO     | [data] copytool_in thread has finished
[2025-10-26 01:36:09] 2025-10-25 23:35:39,715 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-26 01:36:09] 2025-10-25 23:35:39,801 | INFO     | [payload] execute_payloads thread has finished
[2025-10-26 01:36:09] 2025-10-25 23:35:39,909 | INFO     | [payload] control thread has finished
[2025-10-26 01:36:09] 2025-10-25 23:35:40,025 | INFO     | [data] control thread has finished
[2025-10-26 01:36:09] 2025-10-25 23:35:40,356 | INFO     | [data] copytool_out thread has finished
[2025-10-26 01:36:09] 2025-10-25 23:35:40,445 | INFO     | [payload] failed_post thread has finished
[2025-10-26 01:36:09] 2025-10-25 23:35:40,464 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-26 01:36:09] 2025-10-25 23:35:40,721 | INFO     | [job] validate thread has finished
[2025-10-26 01:36:09] 2025-10-25 23:35:40,841 | INFO     | [job] create_data_payload thread has finished
[2025-10-26 01:36:09] 2025-10-25 23:35:43,722 | INFO     | [data] queue_monitor thread has finished
[2025-10-26 01:36:09] 2025-10-25 23:35:53,942 [wrapper] supervise_pilot (15 min periods counter: 6)
[2025-10-26 01:36:09] 2025-10-25 23:36:01,325 | INFO     | [monitor] cgroup control has ended
[2025-10-26 01:36:09] 2025-10-25 23:36:02,800 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140085965145920)>', '<ExcThread(monitor, started 140084577822464)>']
[2025-10-26 01:36:09] 2025-10-25 23:36:07,826 | INFO     | all workflow threads have been joined
[2025-10-26 01:36:09] 2025-10-25 23:36:07,826 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-26 01:36:09] 2025-10-25 23:36:07,826 | INFO     | traces error code: 0
[2025-10-26 01:36:09] 2025-10-25 23:36:07,826 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-26 01:36:09] 2025-10-25 23:36:09,200 | INFO     | PID=2039280 has CPU usage=1.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-26 01:36:09] 2025-10-25 23:36:09,200 | INFO     | found 0 job(s) in 20 queues
[2025-10-26 01:36:09] 2025-10-25 23:36:09,200 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-26 01:36:09] 2025-10-25 23:36:09,200 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-26 01:36:09] 2025-10-25 23:36:09,200 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-26 01:36:09] 2025-10-25 23:36:09,200 | INFO     | [monitor] control thread has ended
[2025-10-26 01:36:09] 2025-10-25 23:36:09,264 [wrapper] ==== pilot stdout END ====
[2025-10-26 01:36:09] 2025-10-25 23:36:09,268 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-26 01:36:09] 2025-10-25 23:36:09,271 [wrapper] pilotpid: 2039280
[2025-10-26 01:36:09] 2025-10-25 23:36:09,275 [wrapper] Pilot exit status: 0
[2025-10-26 01:36:09] 2025-10-25 23:36:09,286 [wrapper] pandaids: 6856727377
[2025-10-26 01:36:09] 2025-10-25 23:36:09,306 [wrapper] cleanup supervisor_pilot 2060513 2039281
[2025-10-26 01:36:09] 2025-10-25 23:36:09,310 [wrapper] Test setup, not cleaning
[2025-10-26 01:36:09] 2025-10-25 23:36:09,313 [wrapper] apfmon messages muted
[2025-10-26 01:36:09] 2025-10-25 23:36:09,317 [wrapper] ==== wrapper stdout END ====
[2025-10-26 01:36:09] 2025-10-25 23:36:09,320 [wrapper] ==== wrapper stderr END ====
[2025-10-26 01:36:09]  *** Error codes and diagnostics ***
[2025-10-26 01:36:09]     "exeErrorCode": 0,
[2025-10-26 01:36:09]     "exeErrorDiag": "",
[2025-10-26 01:36:09]     "pilotErrorCode": 0,
[2025-10-26 01:36:09]     "pilotErrorDiag": "",
[2025-10-26 01:36:09]  *** Listing of results directory ***
[2025-10-26 01:36:09] total 424584
[2025-10-26 01:36:09] -rw-r--r-- 1 boinc boinc    557409 Oct 25 06:39 pilot3.tar.gz
[2025-10-26 01:36:09] -rw-r--r-- 1 boinc boinc      5112 Oct 25 07:03 queuedata.json
[2025-10-26 01:36:09] -rwx------ 1 boinc boinc     36292 Oct 25 07:05 runpilot2-wrapper.sh
[2025-10-26 01:36:09] -rw-r--r-- 1 boinc boinc       100 Oct 26 00:20 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-26 01:36:09] -rwxr-xr-x 1 boinc boinc      7986 Oct 26 00:20 run_atlas
[2025-10-26 01:36:09] -rw-r--r-- 1 boinc boinc       105 Oct 26 00:20 job.xml
[2025-10-26 01:36:09] -rw-r--r-- 2 boinc boinc 226706983 Oct 26 00:20 EVNT.46771634._003991.pool.root.1
[2025-10-26 01:36:09] -rw-r--r-- 2 boinc boinc    569682 Oct 26 00:20 input.tar.gz
[2025-10-26 01:36:09] -rw-r--r-- 2 boinc boinc     15120 Oct 26 00:20 start_atlas.sh
[2025-10-26 01:36:09] drwxrwx--x 2 boinc boinc      4096 Oct 26 00:20 shared
[2025-10-26 01:36:09] -rw-r--r-- 1 boinc boinc         0 Oct 26 00:20 boinc_setup_complete
[2025-10-26 01:36:09] -rw-r--r-- 1 boinc boinc      6368 Oct 26 00:20 init_data.xml
[2025-10-26 01:36:09] -rw-r--r-- 1 boinc boinc         0 Oct 26 00:20 boinc_lockfile
[2025-10-26 01:36:09] -rw-r--r-- 1 boinc boinc      2560 Oct 26 00:20 pandaJob.out
[2025-10-26 01:36:09] -rw------- 1 boinc boinc    978581 Oct 26 00:20 agis_schedconf.cvmfs.json
[2025-10-26 01:36:09] -rw------- 1 boinc boinc   1560772 Oct 26 00:20 agis_ddmendpoints.agis.ALL.json
[2025-10-26 01:36:09] drwx------ 5 boinc boinc      4096 Oct 26 00:20 pilot3
[2025-10-26 01:36:09] -rw------- 1 boinc boinc 202316554 Oct 26 01:35 HITS.46771637._131082.pool.root.1
[2025-10-26 01:36:09] -rw-r--r-- 1 boinc boinc       529 Oct 26 01:35 boinc_task_state.xml
[2025-10-26 01:36:09] -rw------- 1 boinc boinc        95 Oct 26 01:35 pilot_heartbeat.json
[2025-10-26 01:36:09] -rw------- 1 boinc boinc      1019 Oct 26 01:35 memory_monitor_summary.json
[2025-10-26 01:36:09] -rw------- 1 boinc boinc    266006 Oct 26 01:35 log.46771637._131082.job.log.tgz.1
[2025-10-26 01:36:09] -rw------- 1 boinc boinc      7759 Oct 26 01:35 heartbeat.json
[2025-10-26 01:36:09] -rw-r--r-- 1 boinc boinc        27 Oct 26 01:35 wrapper_checkpoint.txt
[2025-10-26 01:36:09] -rw-r--r-- 1 boinc boinc      8192 Oct 26 01:35 boinc_mmap_file
[2025-10-26 01:36:09] -rw------- 1 boinc boinc       747 Oct 26 01:36 pilotlog.txt
[2025-10-26 01:36:09] -rw------- 1 boinc boinc    663209 Oct 26 01:36 log.46771637._131082.job.log.1
[2025-10-26 01:36:09] -rw------- 1 boinc boinc       357 Oct 26 01:36 output.list
[2025-10-26 01:36:09] -rw-r--r-- 1 boinc boinc       620 Oct 26 01:36 runtime_log
[2025-10-26 01:36:09] -rw------- 1 boinc boinc    952320 Oct 26 01:36 result.tar.gz
[2025-10-26 01:36:09] -rw-r--r-- 1 boinc boinc      8777 Oct 26 01:36 runtime_log.err
[2025-10-26 01:36:09] -rw------- 1 boinc boinc       658 Oct 26 01:36 dCaMDmWelW8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmV8DODms5NLQm.diag
[2025-10-26 01:36:09] -rw-r--r-- 1 boinc boinc     11138 Oct 26 01:36 stderr.txt
[2025-10-26 01:36:09] HITS file was successfully produced:
[2025-10-26 01:36:09] -rw------- 1 boinc boinc 202316554 Oct 26 01:35 shared/HITS.pool.root.1
[2025-10-26 01:36:09]  *** Contents of shared directory: ***
[2025-10-26 01:36:09] total 420488
[2025-10-26 01:36:09] -rw-r--r-- 2 boinc boinc 226706983 Oct 26 00:20 ATLAS.root_0
[2025-10-26 01:36:09] -rw-r--r-- 2 boinc boinc    569682 Oct 26 00:20 input.tar.gz
[2025-10-26 01:36:09] -rw-r--r-- 2 boinc boinc     15120 Oct 26 00:20 start_atlas.sh
[2025-10-26 01:36:09] -rw------- 1 boinc boinc 202316554 Oct 26 01:35 HITS.pool.root.1
[2025-10-26 01:36:09] -rw------- 1 boinc boinc    952320 Oct 26 01:36 result.tar.gz
01:36:11 (2035495): run_atlas exited; CPU time 16844.009493
01:36:11 (2035495): called boinc_finish(0)

</stderr_txt>
]]>

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