Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
20:22:11 (496767): wrapper (7.7.26015): starting
20:22:11 (496767): wrapper: running run_atlas (--nthreads 4)
[2025-10-25 20:22:11] Arguments: --nthreads 4
[2025-10-25 20:22:11] Threads: 4
[2025-10-25 20:22:11] Checking for CVMFS
[2025-10-25 20:22:11] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-25 20:22:11] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-25 20:22:11] Running cvmfs_config stat atlas.cern.ch
[2025-10-25 20:22:11] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-25 20:22:11] 2.9.2.0 2150638 6971 96396 152127 2 56 25067796 36864001 0 130560 0 6663647 99.992 260817 1135 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-10-25 20:22:11] CVMFS is ok
[2025-10-25 20:22:11] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-25 20:22:11] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-25 20:22:11] Further information can be found at the LHC@home message board.
[2025-10-25 20:22:11] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-25 20:22:11] Checking for apptainer binary...
[2025-10-25 20:22:11] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-25 20:22:11] Running /usr/bin/apptainer --version
[2025-10-25 20:22:11] apptainer version 1.4.1-1.1
[2025-10-25 20:22:11] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-25 20:22:11] thA315b
[2025-10-25 20:22:11] apptainer works
[2025-10-25 20:22:12] Set ATHENA_PROC_NUMBER=4
[2025-10-25 20:22:12] Set ATHENA_CORE_NUMBER=4
[2025-10-25 20:22:12] Starting ATLAS job with PandaID=6858486811
[2025-10-25 20:22:12] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-25 21:26:28]  *** The last 200 lines of the pilot log: ***
[2025-10-25 21:26:28] 2025-10-25 19:25:48,112 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-25 21:26:28] 2025-10-25 19:25:48,112 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-25 21:26:28] 2025-10-25 19:25:48,112 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-25 21:26:28] 2025-10-25 19:25:48,112 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-25 21:26:28] 2025-10-25 19:25:48,112 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-25 21:26:28] 2025-10-25 19:25:48,112 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-25 21:26:28] 2025-10-25 19:25:48,112 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-25 21:26:28] 2025-10-25 19:25:48,112 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-25 21:26:28] 2025-10-25 19:25:48,112 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-25 21:26:28] 2025-10-25 19:25:48,112 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-25 21:26:28] 2025-10-25 19:25:48,112 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-25 21:26:28] 2025-10-25 19:25:48,112 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-25 21:26:28] 2025-10-25 19:25:48,112 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-25 21:26:28] 2025-10-25 19:25:48,112 | INFO     | job 6858486811 has completed (purged errors)
[2025-10-25 21:26:28] 2025-10-25 19:25:48,112 | INFO     | overall cleanup function is called
[2025-10-25 21:26:28] 2025-10-25 19:25:49,119 | INFO     | --- collectZombieJob: --- 10, [507115]
[2025-10-25 21:26:28] 2025-10-25 19:25:49,119 | INFO     | zombie collector waiting for pid 507115
[2025-10-25 21:26:28] 2025-10-25 19:25:49,119 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-25 21:26:28] 2025-10-25 19:25:49,119 | INFO     | collected zombie processes
[2025-10-25 21:26:28] 2025-10-25 19:25:49,119 | INFO     | will attempt to kill all subprocesses of pid=507115
[2025-10-25 21:26:28] 2025-10-25 19:25:49,165 | INFO     | process IDs to be killed: [507115] (in reverse order)
[2025-10-25 21:26:28] 2025-10-25 19:25:49,192 | WARNING  | found no corresponding commands to process id(s)
[2025-10-25 21:26:28] 2025-10-25 19:25:49,192 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-25 21:26:28] 2025-10-25 19:25:49,193 | INFO     | did not find any defunct processes belonging to 507115
[2025-10-25 21:26:28] 2025-10-25 19:25:49,194 | INFO     | did not find any defunct processes belonging to 507115
[2025-10-25 21:26:28] 2025-10-25 19:25:49,195 | INFO     | ready for new job
[2025-10-25 21:26:28] 2025-10-25 19:25:49,195 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-25 21:26:28] 2025-10-25 19:25:49,195 | INFO     | ***************************************
[2025-10-25 21:26:28] 2025-10-25 19:25:49,195 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-25 21:26:28] 2025-10-25 19:25:49,195 | INFO     | ***************************************
[2025-10-25 21:26:28] 2025-10-25 19:25:49,195 | INFO     | 
[2025-10-25 21:26:28] 2025-10-25 19:25:49,196 | INFO     | architecture information:
[2025-10-25 21:26:28] 2025-10-25 19:25:49,196 | INFO     | executing command: cat /etc/os-release
[2025-10-25 21:26:28] 2025-10-25 19:25:49,205 | INFO     | cat /etc/os-release:
[2025-10-25 21:26:28] NAME="CentOS Linux"
[2025-10-25 21:26:28] VERSION="7 (Core)"
[2025-10-25 21:26:28] ID="centos"
[2025-10-25 21:26:28] ID_LIKE="rhel fedora"
[2025-10-25 21:26:28] VERSION_ID="7"
[2025-10-25 21:26:28] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-25 21:26:28] ANSI_COLOR="0;31"
[2025-10-25 21:26:28] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-25 21:26:28] HOME_URL="https://www.centos.org/"
[2025-10-25 21:26:28] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-25 21:26:28] 
[2025-10-25 21:26:28] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-25 21:26:28] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-25 21:26:28] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-25 21:26:28] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-25 21:26:28] 
[2025-10-25 21:26:28] 2025-10-25 19:25:49,206 | INFO     | ***************************************
[2025-10-25 21:26:28] 2025-10-25 19:25:49,709 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-10-25 21:26:28] 2025-10-25 19:25:49,723 | INFO     | sufficient remaining disk space (335023177728 B)
[2025-10-25 21:26:28] 2025-10-25 19:25:49,723 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-25 21:26:28] 2025-10-25 19:25:49,723 | INFO     | current server update state: UPDATING_FINAL
[2025-10-25 21:26:28] 2025-10-25 19:25:49,723 | INFO     | update_server=False
[2025-10-25 21:26:28] 2025-10-25 19:25:49,723 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-25 21:26:28] 2025-10-25 19:25:49,723 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-25 21:26:28] 2025-10-25 19:25:50,316 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-25 21:26:28] 2025-10-25 19:25:50,316 | INFO     | aborting loop
[2025-10-25 21:26:28] 2025-10-25 19:25:50,325 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-25 21:26:28] 2025-10-25 19:25:50,715 | INFO     | all data control threads have been joined
[2025-10-25 21:26:28] 2025-10-25 19:25:50,729 | INFO     | [job] retrieve thread has finished
[2025-10-25 21:26:28] 2025-10-25 19:25:50,729 | INFO     | [job] queue monitor thread has finished
[2025-10-25 21:26:28] 2025-10-25 19:25:50,880 | INFO     | all payload control threads have been joined
[2025-10-25 21:26:28] 2025-10-25 19:25:50,997 | INFO     | [payload] validate_post thread has finished
[2025-10-25 21:26:28] 2025-10-25 19:25:51,129 | INFO     | [payload] failed_post thread has finished
[2025-10-25 21:26:28] 2025-10-25 19:25:51,322 | INFO     | [job] job monitor thread has finished
[2025-10-25 21:26:28] 2025-10-25 19:25:51,340 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-25 21:26:28] 2025-10-25 19:25:51,391 | INFO     | [data] copytool_in thread has finished
[2025-10-25 21:26:28] 2025-10-25 19:25:51,431 | INFO     | all job control threads have been joined
[2025-10-25 21:26:28] 2025-10-25 19:25:51,557 | INFO     | [job] validate thread has finished
[2025-10-25 21:26:28] 2025-10-25 19:25:51,652 | INFO     | [payload] validate_pre thread has finished
[2025-10-25 21:26:28] 2025-10-25 19:25:51,652 | INFO     | [job] create_data_payload thread has finished
[2025-10-25 21:26:28] 2025-10-25 19:25:51,721 | INFO     | [data] control thread has finished
[2025-10-25 21:26:28] 2025-10-25 19:25:51,886 | INFO     | [payload] control thread has finished
[2025-10-25 21:26:28] 2025-10-25 19:25:51,971 | INFO     | [payload] execute_payloads thread has finished
[2025-10-25 21:26:28] 2025-10-25 19:25:52,041 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-25 21:26:28] 2025-10-25 19:25:52,331 | INFO     | [data] copytool_out thread has finished
[2025-10-25 21:26:28] 2025-10-25 19:25:52,437 | INFO     | [job] control thread has finished
[2025-10-25 21:26:28] 2025-10-25 19:25:55,347 | INFO     | [data] queue_monitor thread has finished
[2025-10-25 21:26:28] 2025-10-25 19:26:20,171 | INFO     | PID=500564 has CPU usage=1.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-10-25 21:26:28] 2025-10-25 19:26:20,172 | INFO     | found 0 job(s) in 20 queues
[2025-10-25 21:26:28] 2025-10-25 19:26:20,172 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-25 21:26:28] 2025-10-25 19:26:20,172 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-25 21:26:28] 2025-10-25 19:26:23,283 | INFO     | [monitor] cgroup control has ended
[2025-10-25 21:26:28] 2025-10-25 19:26:23,774 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139763655759680)>', '<ExcThread(monitor, started 139763168294656)>']
[2025-10-25 21:26:28] 2025-10-25 19:26:24,193 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-25 21:26:28] 2025-10-25 19:26:24,194 | INFO     | [monitor] control thread has ended
[2025-10-25 21:26:28] 2025-10-25 19:26:28,800 | INFO     | all workflow threads have been joined
[2025-10-25 21:26:28] 2025-10-25 19:26:28,800 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-25 21:26:28] 2025-10-25 19:26:28,800 | INFO     | traces error code: 0
[2025-10-25 21:26:28] 2025-10-25 19:26:28,800 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-25 21:26:28] 2025-10-25 19:26:28,855 [wrapper] ==== pilot stdout END ====
[2025-10-25 21:26:28] 2025-10-25 19:26:28,858 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-25 21:26:28] 2025-10-25 19:26:28,860 [wrapper] pilotpid: 500564
[2025-10-25 21:26:28] 2025-10-25 19:26:28,863 [wrapper] Pilot exit status: 0
[2025-10-25 21:26:28] 2025-10-25 19:26:28,871 [wrapper] pandaids: 6858486811
[2025-10-25 21:26:28] 2025-10-25 19:26:28,889 [wrapper] cleanup supervisor_pilot  516979 500565
[2025-10-25 21:26:28] 2025-10-25 19:26:28,892 [wrapper] Test setup, not cleaning
[2025-10-25 21:26:28] 2025-10-25 19:26:28,894 [wrapper] apfmon messages muted
[2025-10-25 21:26:28] 2025-10-25 19:26:28,897 [wrapper] ==== wrapper stdout END ====
[2025-10-25 21:26:28] 2025-10-25 19:26:28,899 [wrapper] ==== wrapper stderr END ====
[2025-10-25 21:26:28]  *** Error codes and diagnostics ***
[2025-10-25 21:26:28]     "exeErrorCode": 0,
[2025-10-25 21:26:28]     "exeErrorDiag": "",
[2025-10-25 21:26:28]     "pilotErrorCode": 0,
[2025-10-25 21:26:28]     "pilotErrorDiag": "",
[2025-10-25 21:26:28]  *** Listing of results directory ***
[2025-10-25 21:26:28] total 458972
[2025-10-25 21:26:28] -rw-r--r-- 1 boinc boinc    557409 Oct 25 02:45 pilot3.tar.gz
[2025-10-25 21:26:28] -rw-r--r-- 1 boinc boinc      5112 Oct 25 03:28 queuedata.json
[2025-10-25 21:26:28] -rwx------ 1 boinc boinc     36292 Oct 25 03:32 runpilot2-wrapper.sh
[2025-10-25 21:26:28] -rw-r--r-- 1 boinc boinc       100 Oct 25 20:22 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-25 21:26:28] -rwxr-xr-x 1 boinc boinc      7986 Oct 25 20:22 run_atlas
[2025-10-25 21:26:28] -rw-r--r-- 1 boinc boinc       105 Oct 25 20:22 job.xml
[2025-10-25 21:26:28] -rw-r--r-- 2 boinc boinc 271263364 Oct 25 20:22 EVNT.46965009._000045.pool.root.1
[2025-10-25 21:26:28] -rw-r--r-- 2 boinc boinc    569710 Oct 25 20:22 input.tar.gz
[2025-10-25 21:26:28] -rw-r--r-- 2 boinc boinc     15120 Oct 25 20:22 start_atlas.sh
[2025-10-25 21:26:28] drwxrwx--x 2 boinc boinc      4096 Oct 25 20:22 shared
[2025-10-25 21:26:28] -rw-r--r-- 1 boinc boinc         0 Oct 25 20:22 boinc_setup_complete
[2025-10-25 21:26:28] -rw-r--r-- 1 boinc boinc      6443 Oct 25 20:22 init_data.xml
[2025-10-25 21:26:28] -rw-r--r-- 1 boinc boinc         0 Oct 25 20:22 boinc_lockfile
[2025-10-25 21:26:28] -rw-r--r-- 1 boinc boinc      2651 Oct 25 20:22 pandaJob.out
[2025-10-25 21:26:28] -rw------- 1 boinc boinc    978589 Oct 25 20:22 agis_schedconf.cvmfs.json
[2025-10-25 21:26:28] -rw------- 1 boinc boinc   1560772 Oct 25 20:22 agis_ddmendpoints.agis.ALL.json
[2025-10-25 21:26:28] drwx------ 5 boinc boinc      4096 Oct 25 20:22 pilot3
[2025-10-25 21:26:28] -rw------- 1 boinc boinc 193193013 Oct 25 21:25 HITS.46965017._001109.pool.root.1
[2025-10-25 21:26:28] -rw-r--r-- 1 boinc boinc       529 Oct 25 21:25 boinc_task_state.xml
[2025-10-25 21:26:28] -rw------- 1 boinc boinc        95 Oct 25 21:25 pilot_heartbeat.json
[2025-10-25 21:26:28] -rw------- 1 boinc boinc      1029 Oct 25 21:25 memory_monitor_summary.json
[2025-10-25 21:26:28] -rw------- 1 boinc boinc    245622 Oct 25 21:25 log.46965017._001109.job.log.tgz.1
[2025-10-25 21:26:28] -rw------- 1 boinc boinc      7733 Oct 25 21:25 heartbeat.json
[2025-10-25 21:26:28] -rw-r--r-- 1 boinc boinc      8192 Oct 25 21:26 boinc_mmap_file
[2025-10-25 21:26:28] -rw-r--r-- 1 boinc boinc        27 Oct 25 21:26 wrapper_checkpoint.txt
[2025-10-25 21:26:28] -rw------- 1 boinc boinc      4751 Oct 25 21:26 pilotlog.txt
[2025-10-25 21:26:28] -rw------- 1 boinc boinc    572312 Oct 25 21:26 log.46965017._001109.job.log.1
[2025-10-25 21:26:28] -rw------- 1 boinc boinc       357 Oct 25 21:26 output.list
[2025-10-25 21:26:28] -rw-r--r-- 1 boinc boinc       620 Oct 25 21:26 runtime_log
[2025-10-25 21:26:28] -rw------- 1 boinc boinc    839680 Oct 25 21:26 result.tar.gz
[2025-10-25 21:26:28] -rw------- 1 boinc boinc       659 Oct 25 21:26 z5lNDmsJiW8n9Rq4apOajLDm4fhM0noT9bVof3QYDmrfmMDm6oqRXn.diag
[2025-10-25 21:26:28] -rw-r--r-- 1 boinc boinc      8782 Oct 25 21:26 runtime_log.err
[2025-10-25 21:26:28] -rw-r--r-- 1 boinc boinc     12132 Oct 25 21:26 stderr.txt
[2025-10-25 21:26:28] HITS file was successfully produced:
[2025-10-25 21:26:28] -rw------- 1 boinc boinc 193193013 Oct 25 21:25 shared/HITS.pool.root.1
[2025-10-25 21:26:28]  *** Contents of shared directory: ***
[2025-10-25 21:26:28] total 454980
[2025-10-25 21:26:28] -rw-r--r-- 2 boinc boinc 271263364 Oct 25 20:22 ATLAS.root_0
[2025-10-25 21:26:28] -rw-r--r-- 2 boinc boinc    569710 Oct 25 20:22 input.tar.gz
[2025-10-25 21:26:28] -rw-r--r-- 2 boinc boinc     15120 Oct 25 20:22 start_atlas.sh
[2025-10-25 21:26:28] -rw------- 1 boinc boinc 193193013 Oct 25 21:25 HITS.pool.root.1
[2025-10-25 21:26:28] -rw------- 1 boinc boinc    839680 Oct 25 21:26 result.tar.gz
21:26:30 (496767): run_atlas exited; CPU time 14212.399145
21:26:30 (496767): called boinc_finish(0)

</stderr_txt>
]]>

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