Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
19:08:04 (3730310): wrapper (7.7.26015): starting
19:08:04 (3730310): wrapper: running run_atlas (--nthreads 4)
[2025-10-25 19:08:04] Arguments: --nthreads 4
[2025-10-25 19:08:04] Threads: 4
[2025-10-25 19:08:04] Checking for CVMFS
[2025-10-25 19:08:04] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-25 19:08:04] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-25 19:08:04] Running cvmfs_config stat atlas.cern.ch
[2025-10-25 19:08:04] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-25 19:08:04] 2.9.2.0 1545554 6826 97672 152124 0 57 31365219 36864000 0 130560 0 5627116 99.990 254744 1065 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-10-25 19:08:04] CVMFS is ok
[2025-10-25 19:08:04] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-25 19:08:04] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-25 19:08:04] Further information can be found at the LHC@home message board.
[2025-10-25 19:08:04] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-25 19:08:04] Checking for apptainer binary...
[2025-10-25 19:08:04] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-25 19:08:04] Running /usr/bin/apptainer --version
[2025-10-25 19:08:04] apptainer version 1.4.1-1.1
[2025-10-25 19:08:04] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-25 19:08:04] thA309
[2025-10-25 19:08:04] apptainer works
[2025-10-25 19:08:04] Set ATHENA_PROC_NUMBER=4
[2025-10-25 19:08:04] Set ATHENA_CORE_NUMBER=4
[2025-10-25 19:08:04] Starting ATLAS job with PandaID=6856223828
[2025-10-25 19:08:04] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-25 20:28:23]  *** The last 200 lines of the pilot log: ***
[2025-10-25 20:28:23] 2025-10-25 18:27:47,479 | INFO     | 
[2025-10-25 20:28:23] 2025-10-25 18:27:47,479 | INFO     | executing command: ls -lF /local/data/boinc/slots/0
[2025-10-25 20:28:23] 2025-10-25 18:27:47,498 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-25 20:28:23] 2025-10-25 18:27:47,498 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-25 20:28:23] 2025-10-25 18:27:47,498 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-25 20:28:23] 2025-10-25 18:27:47,498 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-25 20:28:23] 2025-10-25 18:27:47,498 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-25 20:28:23] 2025-10-25 18:27:47,498 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-25 20:28:23] 2025-10-25 18:27:47,498 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-25 20:28:23] 2025-10-25 18:27:47,498 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-25 20:28:23] 2025-10-25 18:27:47,498 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-25 20:28:23] 2025-10-25 18:27:47,498 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-25 20:28:23] 2025-10-25 18:27:47,498 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-25 20:28:23] 2025-10-25 18:27:47,499 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-25 20:28:23] 2025-10-25 18:27:47,499 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-25 20:28:23] 2025-10-25 18:27:47,499 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-25 20:28:23] 2025-10-25 18:27:47,499 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-25 20:28:23] 2025-10-25 18:27:47,499 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-25 20:28:23] 2025-10-25 18:27:47,499 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-25 20:28:23] 2025-10-25 18:27:47,499 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-25 20:28:23] 2025-10-25 18:27:47,499 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-25 20:28:23] 2025-10-25 18:27:47,499 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-25 20:28:23] 2025-10-25 18:27:47,499 | INFO     | job 6856223828 has completed (purged errors)
[2025-10-25 20:28:23] 2025-10-25 18:27:47,499 | INFO     | overall cleanup function is called
[2025-10-25 20:28:23] 2025-10-25 18:27:48,506 | INFO     | --- collectZombieJob: --- 10, [3740687]
[2025-10-25 20:28:23] 2025-10-25 18:27:48,506 | INFO     | zombie collector waiting for pid 3740687
[2025-10-25 20:28:23] 2025-10-25 18:27:48,506 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-25 20:28:23] 2025-10-25 18:27:48,506 | INFO     | collected zombie processes
[2025-10-25 20:28:23] 2025-10-25 18:27:48,506 | INFO     | will attempt to kill all subprocesses of pid=3740687
[2025-10-25 20:28:23] 2025-10-25 18:27:48,558 | INFO     | process IDs to be killed: [3740687] (in reverse order)
[2025-10-25 20:28:23] 2025-10-25 18:27:48,595 | WARNING  | found no corresponding commands to process id(s)
[2025-10-25 20:28:23] 2025-10-25 18:27:48,595 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-25 20:28:23] 2025-10-25 18:27:48,598 | INFO     | did not find any defunct processes belonging to 3740687
[2025-10-25 20:28:23] 2025-10-25 18:27:48,599 | INFO     | did not find any defunct processes belonging to 3740687
[2025-10-25 20:28:23] 2025-10-25 18:27:48,599 | INFO     | ready for new job
[2025-10-25 20:28:23] 2025-10-25 18:27:48,599 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-25 20:28:23] 2025-10-25 18:27:48,600 | INFO     | ***************************************
[2025-10-25 20:28:23] 2025-10-25 18:27:48,600 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-25 20:28:23] 2025-10-25 18:27:48,600 | INFO     | ***************************************
[2025-10-25 20:28:23] 2025-10-25 18:27:48,600 | INFO     | 
[2025-10-25 20:28:23] 2025-10-25 18:27:48,601 | INFO     | architecture information:
[2025-10-25 20:28:23] 2025-10-25 18:27:48,601 | INFO     | executing command: cat /etc/os-release
[2025-10-25 20:28:23] 2025-10-25 18:27:48,617 | INFO     | cat /etc/os-release:
[2025-10-25 20:28:23] NAME="CentOS Linux"
[2025-10-25 20:28:23] VERSION="7 (Core)"
[2025-10-25 20:28:23] ID="centos"
[2025-10-25 20:28:23] ID_LIKE="rhel fedora"
[2025-10-25 20:28:23] VERSION_ID="7"
[2025-10-25 20:28:23] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-25 20:28:23] ANSI_COLOR="0;31"
[2025-10-25 20:28:23] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-25 20:28:23] HOME_URL="https://www.centos.org/"
[2025-10-25 20:28:23] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-25 20:28:23] 
[2025-10-25 20:28:23] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-25 20:28:23] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-25 20:28:23] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-25 20:28:23] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-25 20:28:23] 
[2025-10-25 20:28:23] 2025-10-25 18:27:48,617 | INFO     | ***************************************
[2025-10-25 20:28:23] 2025-10-25 18:27:49,121 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-10-25 20:28:23] 2025-10-25 18:27:49,139 | INFO     | sufficient remaining disk space (228455350272 B)
[2025-10-25 20:28:23] 2025-10-25 18:27:49,139 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-25 20:28:23] 2025-10-25 18:27:49,139 | INFO     | current server update state: UPDATING_FINAL
[2025-10-25 20:28:23] 2025-10-25 18:27:49,139 | INFO     | update_server=False
[2025-10-25 20:28:23] 2025-10-25 18:27:49,140 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-25 20:28:23] 2025-10-25 18:27:49,140 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-25 20:28:23] 2025-10-25 18:27:49,140 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-10-25 20:28:23] 2025-10-25 18:27:49,140 | INFO     | found 0 job(s) in 20 queues
[2025-10-25 20:28:23] 2025-10-25 18:27:49,140 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-25 20:28:23] 2025-10-25 18:27:49,140 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-25 20:28:23] 2025-10-25 18:27:49,578 | INFO     | all data control threads have been joined
[2025-10-25 20:28:23] 2025-10-25 18:27:49,610 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-25 20:28:23] 2025-10-25 18:27:49,610 | INFO     | aborting loop
[2025-10-25 20:28:23] 2025-10-25 18:27:50,122 | INFO     | all job control threads have been joined
[2025-10-25 20:28:23] 2025-10-25 18:27:50,145 | INFO     | [job] queue monitor thread has finished
[2025-10-25 20:28:23] 2025-10-25 18:27:50,146 | INFO     | [job] retrieve thread has finished
[2025-10-25 20:28:23] 2025-10-25 18:27:50,491 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-25 20:28:23] 2025-10-25 18:27:50,508 | INFO     | all payload control threads have been joined
[2025-10-25 20:28:23] 2025-10-25 18:27:50,525 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-25 20:28:23] 2025-10-25 18:27:50,568 | INFO     | [data] copytool_in thread has finished
[2025-10-25 20:28:23] 2025-10-25 18:27:50,583 | INFO     | [data] control thread has finished
[2025-10-25 20:28:23] 2025-10-25 18:27:50,616 | INFO     | [job] job monitor thread has finished
[2025-10-25 20:28:23] 2025-10-25 18:27:50,618 | INFO     | [payload] validate_post thread has finished
[2025-10-25 20:28:23] 2025-10-25 18:27:51,128 | INFO     | [job] control thread has finished
[2025-10-25 20:28:23] 2025-10-25 18:27:51,381 | INFO     | [payload] execute_payloads thread has finished
[2025-10-25 20:28:23] 2025-10-25 18:27:51,382 | INFO     | [job] validate thread has finished
[2025-10-25 20:28:23] 2025-10-25 18:27:51,384 | INFO     | [payload] failed_post thread has finished
[2025-10-25 20:28:23] 2025-10-25 18:27:51,490 | INFO     | [job] create_data_payload thread has finished
[2025-10-25 20:28:23] 2025-10-25 18:27:51,514 | INFO     | [payload] control thread has finished
[2025-10-25 20:28:23] 2025-10-25 18:27:51,573 | INFO     | [payload] validate_pre thread has finished
[2025-10-25 20:28:23] 2025-10-25 18:27:52,496 | INFO     | [data] copytool_out thread has finished
[2025-10-25 20:28:23] 2025-10-25 18:27:54,532 | INFO     | [data] queue_monitor thread has finished
[2025-10-25 20:28:23] 2025-10-25 18:27:59,991 | INFO     | job.realtimelogging is not enabled
[2025-10-25 20:28:23] 2025-10-25 18:28:00,997 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-25 20:28:23] 2025-10-25 18:28:18,232 | INFO     | [monitor] cgroup control has ended
[2025-10-25 20:28:23] 2025-10-25 18:28:18,756 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140347008464704)>', '<ExcThread(monitor, started 140346243675904)>']
[2025-10-25 20:28:23] 2025-10-25 18:28:19,291 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-25 20:28:23] 2025-10-25 18:28:19,292 | INFO     | [monitor] control thread has ended
[2025-10-25 20:28:23] 2025-10-25 18:28:23,782 | INFO     | all workflow threads have been joined
[2025-10-25 20:28:23] 2025-10-25 18:28:23,782 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-25 20:28:23] 2025-10-25 18:28:23,782 | INFO     | traces error code: 0
[2025-10-25 20:28:23] 2025-10-25 18:28:23,782 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-25 20:28:23] 2025-10-25 18:28:23,865 [wrapper] ==== pilot stdout END ====
[2025-10-25 20:28:23] 2025-10-25 18:28:23,869 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-25 20:28:23] 2025-10-25 18:28:23,873 [wrapper] pilotpid: 3734100
[2025-10-25 20:28:23] 2025-10-25 18:28:23,877 [wrapper] Pilot exit status: 0
[2025-10-25 20:28:23] 2025-10-25 18:28:23,889 [wrapper] pandaids: 6856223828
[2025-10-25 20:28:23] 2025-10-25 18:28:23,913 [wrapper] cleanup supervisor_pilot 3753454 3734101
[2025-10-25 20:28:23] 2025-10-25 18:28:23,918 [wrapper] Test setup, not cleaning
[2025-10-25 20:28:23] 2025-10-25 18:28:23,922 [wrapper] apfmon messages muted
[2025-10-25 20:28:23] 2025-10-25 18:28:23,925 [wrapper] ==== wrapper stdout END ====
[2025-10-25 20:28:23] 2025-10-25 18:28:23,929 [wrapper] ==== wrapper stderr END ====
[2025-10-25 20:28:23]  *** Error codes and diagnostics ***
[2025-10-25 20:28:23]     "exeErrorCode": 0,
[2025-10-25 20:28:23]     "exeErrorDiag": "",
[2025-10-25 20:28:23]     "pilotErrorCode": 0,
[2025-10-25 20:28:23]     "pilotErrorDiag": "",
[2025-10-25 20:28:23]  *** Listing of results directory ***
[2025-10-25 20:28:23] total 426772
[2025-10-25 20:28:23] -rw-r--r-- 1 boinc boinc    557409 Oct 25 01:40 pilot3.tar.gz
[2025-10-25 20:28:23] -rw-r--r-- 1 boinc boinc      5112 Oct 25 02:28 queuedata.json
[2025-10-25 20:28:23] -rwx------ 1 boinc boinc     36292 Oct 25 02:32 runpilot2-wrapper.sh
[2025-10-25 20:28:23] -rw-r--r-- 1 boinc boinc       100 Oct 25 19:08 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-25 20:28:23] -rwxr-xr-x 1 boinc boinc      7986 Oct 25 19:08 run_atlas
[2025-10-25 20:28:23] -rw-r--r-- 1 boinc boinc       105 Oct 25 19:08 job.xml
[2025-10-25 20:28:23] -rw-r--r-- 2 boinc boinc 226636395 Oct 25 19:08 EVNT.46771634._005112.pool.root.1
[2025-10-25 20:28:23] -rw-r--r-- 2 boinc boinc    569690 Oct 25 19:08 input.tar.gz
[2025-10-25 20:28:23] -rw-r--r-- 2 boinc boinc     15120 Oct 25 19:08 start_atlas.sh
[2025-10-25 20:28:23] drwxrwx--x 2 boinc boinc      4096 Oct 25 19:08 shared
[2025-10-25 20:28:23] -rw-r--r-- 1 boinc boinc         0 Oct 25 19:08 boinc_setup_complete
[2025-10-25 20:28:23] -rw-r--r-- 1 boinc boinc      6377 Oct 25 19:08 init_data.xml
[2025-10-25 20:28:23] -rw-r--r-- 1 boinc boinc         0 Oct 25 19:08 boinc_lockfile
[2025-10-25 20:28:23] -rw-r--r-- 1 boinc boinc      2562 Oct 25 19:08 pandaJob.out
[2025-10-25 20:28:23] -rw------- 1 boinc boinc    978597 Oct 25 19:08 agis_schedconf.cvmfs.json
[2025-10-25 20:28:23] -rw------- 1 boinc boinc   1560772 Oct 25 19:08 agis_ddmendpoints.agis.ALL.json
[2025-10-25 20:28:23] drwx------ 5 boinc boinc      4096 Oct 25 19:08 pilot3
[2025-10-25 20:28:23] -rw------- 1 boinc boinc 204510552 Oct 25 20:27 HITS.46771637._128215.pool.root.1
[2025-10-25 20:28:23] -rw-r--r-- 1 boinc boinc       529 Oct 25 20:27 boinc_task_state.xml
[2025-10-25 20:28:23] -rw------- 1 boinc boinc      1032 Oct 25 20:27 memory_monitor_summary.json
[2025-10-25 20:28:23] -rw------- 1 boinc boinc    280021 Oct 25 20:27 log.46771637._128215.job.log.tgz.1
[2025-10-25 20:28:23] -rw------- 1 boinc boinc        95 Oct 25 20:27 pilot_heartbeat.json
[2025-10-25 20:28:23] -rw------- 1 boinc boinc      7760 Oct 25 20:27 heartbeat.json
[2025-10-25 20:28:23] -rw-r--r-- 1 boinc boinc      8192 Oct 25 20:27 boinc_mmap_file
[2025-10-25 20:28:23] -rw-r--r-- 1 boinc boinc        27 Oct 25 20:27 wrapper_checkpoint.txt
[2025-10-25 20:28:23] -rw------- 1 boinc boinc      4628 Oct 25 20:28 pilotlog.txt
[2025-10-25 20:28:23] -rw------- 1 boinc boinc    702409 Oct 25 20:28 log.46771637._128215.job.log.1
[2025-10-25 20:28:23] -rw------- 1 boinc boinc       357 Oct 25 20:28 output.list
[2025-10-25 20:28:23] -rw-r--r-- 1 boinc boinc       620 Oct 25 20:28 runtime_log
[2025-10-25 20:28:23] -rw------- 1 boinc boinc   1003520 Oct 25 20:28 result.tar.gz
[2025-10-25 20:28:23] -rw-r--r-- 1 boinc boinc      8777 Oct 25 20:28 runtime_log.err
[2025-10-25 20:28:23] -rw------- 1 boinc boinc       658 Oct 25 20:28 CkjLDmrNhW8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmHYDODmyNHJWm.diag
[2025-10-25 20:28:23] -rw-r--r-- 1 boinc boinc     13018 Oct 25 20:28 stderr.txt
[2025-10-25 20:28:24] HITS file was successfully produced:
[2025-10-25 20:28:24] -rw------- 1 boinc boinc 204510552 Oct 25 20:27 shared/HITS.pool.root.1
[2025-10-25 20:28:24]  *** Contents of shared directory: ***
[2025-10-25 20:28:24] total 422612
[2025-10-25 20:28:24] -rw-r--r-- 2 boinc boinc 226636395 Oct 25 19:08 ATLAS.root_0
[2025-10-25 20:28:24] -rw-r--r-- 2 boinc boinc    569690 Oct 25 19:08 input.tar.gz
[2025-10-25 20:28:24] -rw-r--r-- 2 boinc boinc     15120 Oct 25 19:08 start_atlas.sh
[2025-10-25 20:28:24] -rw------- 1 boinc boinc 204510552 Oct 25 20:27 HITS.pool.root.1
[2025-10-25 20:28:24] -rw------- 1 boinc boinc   1003520 Oct 25 20:28 result.tar.gz
20:28:25 (3730310): run_atlas exited; CPU time 17926.881797
20:28:25 (3730310): called boinc_finish(0)

</stderr_txt>
]]>

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