Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
19:15:41 (471794): wrapper (7.7.26015): starting
19:15:41 (471794): wrapper: running run_atlas (--nthreads 4)
[2025-10-25 19:15:41] Arguments: --nthreads 4
[2025-10-25 19:15:41] Threads: 4
[2025-10-25 19:15:41] Checking for CVMFS
[2025-10-25 19:15:41] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-25 19:15:41] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-25 19:15:41] Running cvmfs_config stat atlas.cern.ch
[2025-10-25 19:15:42] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-25 19:15:42] 2.9.2.0 2150638 6905 96408 152124 0 57 25051391 36864001 0 130560 0 6598238 99.992 256862 1133 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-10-25 19:15:42] CVMFS is ok
[2025-10-25 19:15:42] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-25 19:15:42] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-25 19:15:42] Further information can be found at the LHC@home message board.
[2025-10-25 19:15:42] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-25 19:15:42] Checking for apptainer binary...
[2025-10-25 19:15:42] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-25 19:15:42] Running /usr/bin/apptainer --version
[2025-10-25 19:15:42] apptainer version 1.4.1-1.1
[2025-10-25 19:15:42] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-25 19:15:42] thA315b
[2025-10-25 19:15:42] apptainer works
[2025-10-25 19:15:42] Set ATHENA_PROC_NUMBER=4
[2025-10-25 19:15:42] Set ATHENA_CORE_NUMBER=4
[2025-10-25 19:15:42] Starting ATLAS job with PandaID=6856129676
[2025-10-25 19:15:42] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-25 20:22:06]  *** The last 200 lines of the pilot log: ***
[2025-10-25 20:22:06] 2025-10-25 18:21:34,871 | INFO     | job 6856129676 has completed (purged errors)
[2025-10-25 20:22:06] 2025-10-25 18:21:34,871 | INFO     | overall cleanup function is called
[2025-10-25 20:22:06] 2025-10-25 18:21:35,877 | INFO     | --- collectZombieJob: --- 10, [482158]
[2025-10-25 20:22:06] 2025-10-25 18:21:35,877 | INFO     | zombie collector waiting for pid 482158
[2025-10-25 20:22:06] 2025-10-25 18:21:35,877 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-25 20:22:06] 2025-10-25 18:21:35,877 | INFO     | collected zombie processes
[2025-10-25 20:22:06] 2025-10-25 18:21:35,877 | INFO     | will attempt to kill all subprocesses of pid=482158
[2025-10-25 20:22:06] 2025-10-25 18:21:35,922 | INFO     | process IDs to be killed: [482158] (in reverse order)
[2025-10-25 20:22:06] 2025-10-25 18:21:35,949 | WARNING  | found no corresponding commands to process id(s)
[2025-10-25 20:22:06] 2025-10-25 18:21:35,949 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-25 20:22:06] 2025-10-25 18:21:35,950 | INFO     | did not find any defunct processes belonging to 482158
[2025-10-25 20:22:06] 2025-10-25 18:21:35,951 | INFO     | did not find any defunct processes belonging to 482158
[2025-10-25 20:22:06] 2025-10-25 18:21:35,951 | INFO     | ready for new job
[2025-10-25 20:22:06] 2025-10-25 18:21:35,951 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-25 20:22:06] 2025-10-25 18:21:35,952 | INFO     | ***************************************
[2025-10-25 20:22:06] 2025-10-25 18:21:35,952 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-25 20:22:06] 2025-10-25 18:21:35,952 | INFO     | ***************************************
[2025-10-25 20:22:06] 2025-10-25 18:21:35,952 | INFO     | 
[2025-10-25 20:22:06] 2025-10-25 18:21:35,952 | INFO     | architecture information:
[2025-10-25 20:22:06] 2025-10-25 18:21:35,953 | INFO     | executing command: cat /etc/os-release
[2025-10-25 20:22:06] 2025-10-25 18:21:35,962 | INFO     | cat /etc/os-release:
[2025-10-25 20:22:06] NAME="CentOS Linux"
[2025-10-25 20:22:06] VERSION="7 (Core)"
[2025-10-25 20:22:06] ID="centos"
[2025-10-25 20:22:06] ID_LIKE="rhel fedora"
[2025-10-25 20:22:06] VERSION_ID="7"
[2025-10-25 20:22:06] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-25 20:22:06] ANSI_COLOR="0;31"
[2025-10-25 20:22:06] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-25 20:22:06] HOME_URL="https://www.centos.org/"
[2025-10-25 20:22:06] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-25 20:22:06] 
[2025-10-25 20:22:06] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-25 20:22:06] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-25 20:22:06] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-25 20:22:06] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-25 20:22:06] 
[2025-10-25 20:22:06] 2025-10-25 18:21:35,962 | INFO     | ***************************************
[2025-10-25 20:22:06] 2025-10-25 18:21:36,465 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-10-25 20:22:06] 2025-10-25 18:21:36,479 | INFO     | sufficient remaining disk space (334834434048 B)
[2025-10-25 20:22:06] 2025-10-25 18:21:36,479 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-25 20:22:06] 2025-10-25 18:21:36,479 | INFO     | current server update state: UPDATING_FINAL
[2025-10-25 20:22:06] 2025-10-25 18:21:36,479 | INFO     | update_server=False
[2025-10-25 20:22:06] 2025-10-25 18:21:36,479 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-25 20:22:06] 2025-10-25 18:21:36,479 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-25 20:22:06] 2025-10-25 18:21:36,479 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-25 20:22:06] 2025-10-25 18:21:36,479 | INFO     | aborting loop
[2025-10-25 20:22:06] 2025-10-25 18:21:36,539 | INFO     | all payload control threads have been joined
[2025-10-25 20:22:06] 2025-10-25 18:21:36,603 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-25 20:22:06] 2025-10-25 18:21:36,729 | INFO     | all data control threads have been joined
[2025-10-25 20:22:06] 2025-10-25 18:21:37,374 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-25 20:22:06] 2025-10-25 18:21:37,485 | INFO     | [job] queue monitor thread has finished
[2025-10-25 20:22:06] 2025-10-25 18:21:37,485 | INFO     | [job] retrieve thread has finished
[2025-10-25 20:22:06] 2025-10-25 18:21:37,485 | INFO     | [job] job monitor thread has finished
[2025-10-25 20:22:06] 2025-10-25 18:21:37,545 | INFO     | [payload] control thread has finished
[2025-10-25 20:22:06] 2025-10-25 18:21:37,547 | INFO     | [payload] failed_post thread has finished
[2025-10-25 20:22:06] 2025-10-25 18:21:37,735 | INFO     | [data] control thread has finished
[2025-10-25 20:22:06] 2025-10-25 18:21:38,075 | INFO     | [payload] validate_post thread has finished
[2025-10-25 20:22:06] 2025-10-25 18:21:38,139 | INFO     | all job control threads have been joined
[2025-10-25 20:22:06] 2025-10-25 18:21:38,261 | INFO     | [data] copytool_in thread has finished
[2025-10-25 20:22:06] 2025-10-25 18:21:38,475 | INFO     | [job] validate thread has finished
[2025-10-25 20:22:06] 2025-10-25 18:21:38,554 | INFO     | [job] create_data_payload thread has finished
[2025-10-25 20:22:06] 2025-10-25 18:21:38,554 | INFO     | [payload] validate_pre thread has finished
[2025-10-25 20:22:06] 2025-10-25 18:21:38,875 | INFO     | [payload] execute_payloads thread has finished
[2025-10-25 20:22:06] 2025-10-25 18:21:39,145 | INFO     | [job] control thread has finished
[2025-10-25 20:22:06] 2025-10-25 18:21:39,381 | INFO     | [data] copytool_out thread has finished
[2025-10-25 20:22:06] 2025-10-25 18:21:40,605 | INFO     | [data] queue_monitor thread has finished
[2025-10-25 20:22:06] 2025-10-25 18:21:46,674 | INFO     | job.realtimelogging is not enabled
[2025-10-25 20:22:06] 2025-10-25 18:21:47,680 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-25 20:22:06] 2025-10-25 18:21:53,474 | INFO     | [monitor] cgroup control has ended
[2025-10-25 20:22:06] 2025-10-25 18:21:53,850 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139761325197120)>', '<ExcThread(monitor, started 139760240682752)>']
[2025-10-25 20:22:06] 2025-10-25 18:21:58,875 | INFO     | all workflow threads have been joined
[2025-10-25 20:22:06] 2025-10-25 18:21:58,876 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-25 20:22:06] 2025-10-25 18:21:58,877 | INFO     | traces error code: 0
[2025-10-25 20:22:06] 2025-10-25 18:21:58,877 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-25 20:22:06] 2025-10-25 18:22:06,674 | INFO     | PID=475588 has CPU usage=1.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-10-25 20:22:06] 2025-10-25 18:22:06,674 | INFO     | found 0 job(s) in 20 queues
[2025-10-25 20:22:06] 2025-10-25 18:22:06,674 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-25 20:22:06] 2025-10-25 18:22:06,674 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-25 20:22:06] 2025-10-25 18:22:06,674 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-25 20:22:06] 2025-10-25 18:22:06,674 | INFO     | [monitor] control thread has ended
[2025-10-25 20:22:06] 2025-10-25 18:22:06,724 [wrapper] ==== pilot stdout END ====
[2025-10-25 20:22:06] 2025-10-25 18:22:06,727 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-25 20:22:06] 2025-10-25 18:22:06,729 [wrapper] pilotpid: 475588
[2025-10-25 20:22:06] 2025-10-25 18:22:06,732 [wrapper] Pilot exit status: 0
[2025-10-25 20:22:06] 2025-10-25 18:22:06,740 [wrapper] pandaids: 6856129676
[2025-10-25 20:22:06] 2025-10-25 18:22:06,758 [wrapper] cleanup supervisor_pilot  491938 475589
[2025-10-25 20:22:06] 2025-10-25 18:22:06,761 [wrapper] Test setup, not cleaning
[2025-10-25 20:22:06] 2025-10-25 18:22:06,763 [wrapper] apfmon messages muted
[2025-10-25 20:22:06] 2025-10-25 18:22:06,766 [wrapper] ==== wrapper stdout END ====
[2025-10-25 20:22:06] 2025-10-25 18:22:06,768 [wrapper] ==== wrapper stderr END ====
[2025-10-25 20:22:06]  *** Error codes and diagnostics ***
[2025-10-25 20:22:06]     "exeErrorCode": 0,
[2025-10-25 20:22:06]     "exeErrorDiag": "",
[2025-10-25 20:22:06]     "pilotErrorCode": 0,
[2025-10-25 20:22:06]     "pilotErrorDiag": "",
[2025-10-25 20:22:06]  *** Listing of results directory ***
[2025-10-25 20:22:06] total 428472
[2025-10-25 20:22:06] -rw-r--r-- 1 boinc boinc    557409 Oct 24 23:37 pilot3.tar.gz
[2025-10-25 20:22:06] -rwx------ 1 boinc boinc     36292 Oct 25 00:27 runpilot2-wrapper.sh
[2025-10-25 20:22:06] -rw-r--r-- 1 boinc boinc      5112 Oct 25 00:27 queuedata.json
[2025-10-25 20:22:06] -rw-r--r-- 1 boinc boinc       100 Oct 25 19:15 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-25 20:22:06] -rwxr-xr-x 1 boinc boinc      7986 Oct 25 19:15 run_atlas
[2025-10-25 20:22:06] -rw-r--r-- 1 boinc boinc       105 Oct 25 19:15 job.xml
[2025-10-25 20:22:06] -rw-r--r-- 2 boinc boinc 226068671 Oct 25 19:15 EVNT.46771634._005022.pool.root.1
[2025-10-25 20:22:06] -rw-r--r-- 2 boinc boinc    569683 Oct 25 19:15 input.tar.gz
[2025-10-25 20:22:06] -rw-r--r-- 2 boinc boinc     15120 Oct 25 19:15 start_atlas.sh
[2025-10-25 20:22:06] drwxrwx--x 2 boinc boinc      4096 Oct 25 19:15 shared
[2025-10-25 20:22:06] -rw-r--r-- 1 boinc boinc         0 Oct 25 19:15 boinc_setup_complete
[2025-10-25 20:22:06] -rw-r--r-- 1 boinc boinc      6443 Oct 25 19:15 init_data.xml
[2025-10-25 20:22:06] -rw-r--r-- 1 boinc boinc         0 Oct 25 19:15 boinc_lockfile
[2025-10-25 20:22:06] -rw-r--r-- 1 boinc boinc      2562 Oct 25 19:15 pandaJob.out
[2025-10-25 20:22:06] -rw------- 1 boinc boinc    978597 Oct 25 19:15 agis_schedconf.cvmfs.json
[2025-10-25 20:22:06] -rw------- 1 boinc boinc   1560772 Oct 25 19:15 agis_ddmendpoints.agis.ALL.json
[2025-10-25 20:22:06] drwx------ 5 boinc boinc      4096 Oct 25 19:15 pilot3
[2025-10-25 20:22:06] -rw-r--r-- 1 boinc boinc       529 Oct 25 20:21 boinc_task_state.xml
[2025-10-25 20:22:06] -rw------- 1 boinc boinc        95 Oct 25 20:21 pilot_heartbeat.json
[2025-10-25 20:22:06] -rw------- 1 boinc boinc 207120120 Oct 25 20:21 HITS.46771637._126054.pool.root.1
[2025-10-25 20:22:06] -rw------- 1 boinc boinc      1015 Oct 25 20:21 memory_monitor_summary.json
[2025-10-25 20:22:06] -rw------- 1 boinc boinc    246807 Oct 25 20:21 log.46771637._126054.job.log.tgz.1
[2025-10-25 20:22:06] -rw------- 1 boinc boinc      7751 Oct 25 20:21 heartbeat.json
[2025-10-25 20:22:06] -rw-r--r-- 1 boinc boinc        27 Oct 25 20:21 wrapper_checkpoint.txt
[2025-10-25 20:22:06] -rw-r--r-- 1 boinc boinc      8192 Oct 25 20:21 boinc_mmap_file
[2025-10-25 20:22:06] -rw------- 1 boinc boinc       746 Oct 25 20:22 pilotlog.txt
[2025-10-25 20:22:06] -rw------- 1 boinc boinc    589621 Oct 25 20:22 log.46771637._126054.job.log.1
[2025-10-25 20:22:06] -rw------- 1 boinc boinc       357 Oct 25 20:22 output.list
[2025-10-25 20:22:06] -rw-r--r-- 1 boinc boinc       620 Oct 25 20:22 runtime_log
[2025-10-25 20:22:06] -rw------- 1 boinc boinc    860160 Oct 25 20:22 result.tar.gz
[2025-10-25 20:22:06] -rw-r--r-- 1 boinc boinc      8782 Oct 25 20:22 runtime_log.err
[2025-10-25 20:22:06] -rw------- 1 boinc boinc       659 Oct 25 20:22 eziMDmTRfW8n9Rq4apOajLDm4fhM0noT9bVof3QYDmMLmMDmUVb6gm.diag
[2025-10-25 20:22:06] -rw-r--r-- 1 boinc boinc     10897 Oct 25 20:22 stderr.txt
[2025-10-25 20:22:06] HITS file was successfully produced:
[2025-10-25 20:22:06] -rw------- 1 boinc boinc 207120120 Oct 25 20:21 shared/HITS.pool.root.1
[2025-10-25 20:22:06]  *** Contents of shared directory: ***
[2025-10-25 20:22:06] total 424464
[2025-10-25 20:22:06] -rw-r--r-- 2 boinc boinc 226068671 Oct 25 19:15 ATLAS.root_0
[2025-10-25 20:22:06] -rw-r--r-- 2 boinc boinc    569683 Oct 25 19:15 input.tar.gz
[2025-10-25 20:22:06] -rw-r--r-- 2 boinc boinc     15120 Oct 25 19:15 start_atlas.sh
[2025-10-25 20:22:06] -rw------- 1 boinc boinc 207120120 Oct 25 20:21 HITS.pool.root.1
[2025-10-25 20:22:06] -rw------- 1 boinc boinc    860160 Oct 25 20:22 result.tar.gz
20:22:08 (471794): run_atlas exited; CPU time 14848.427229
20:22:08 (471794): called boinc_finish(0)

</stderr_txt>
]]>

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