Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
15:36:55 (4013604): wrapper (7.7.26015): starting
15:36:55 (4013604): wrapper: running run_atlas (--nthreads 4)
[2025-10-25 15:36:55] Arguments: --nthreads 4
[2025-10-25 15:36:55] Threads: 4
[2025-10-25 15:36:55] Checking for CVMFS
[2025-10-25 15:36:55] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-25 15:36:56] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-25 15:36:56] Running cvmfs_config stat atlas.cern.ch
[2025-10-25 15:36:56] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-25 15:36:56] 2.9.2.0 1897483 6558 101092 152119 0 57 26158381 36864000 0 130560 0 5488895 99.990 244760 1021 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-10-25 15:36:56] CVMFS is ok
[2025-10-25 15:36:56] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-25 15:36:56] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-25 15:36:56] Further information can be found at the LHC@home message board.
[2025-10-25 15:36:56] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-25 15:36:56] Checking for apptainer binary...
[2025-10-25 15:36:56] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-25 15:36:56] Running /usr/bin/apptainer --version
[2025-10-25 15:36:56] apptainer version 1.4.1-1.1
[2025-10-25 15:36:56] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-25 15:36:56] cosA131b
[2025-10-25 15:36:56] apptainer works
[2025-10-25 15:36:56] Set ATHENA_PROC_NUMBER=4
[2025-10-25 15:36:56] Set ATHENA_CORE_NUMBER=4
[2025-10-25 15:36:56] Starting ATLAS job with PandaID=6856222538
[2025-10-25 15:36:56] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-25 16:56:16]  *** The last 200 lines of the pilot log: ***
[2025-10-25 16:56:16]  storage_token=
[2025-10-25 16:56:16]  surl=/local/data/boinc/slots/0/PanDA_Pilot-6856222538/log.46771637._127462.job.log.tgz.1
[2025-10-25 16:56:16]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/a4/82/log.46771637._127462.job.log.tgz.1
[2025-10-25 16:56:16]  workdir=None
[2025-10-25 16:56:16] ]
[2025-10-25 16:56:16] 2025-10-25 14:55:24,453 | INFO     | transferring file log.46771637._127462.job.log.tgz.1 from /local/data/boinc/slots/0/PanDA_Pilot-6856222538/log.46771637._127462.job.log.tgz.1 to /local/data/boinc/
[2025-10-25 16:56:16] 2025-10-25 14:55:24,454 | INFO     | executing command: /usr/bin/env mv /local/data/boinc/slots/0/PanDA_Pilot-6856222538/log.46771637._127462.job.log.tgz.1 /local/data/boinc/slots/0/log.46771637._1274
[2025-10-25 16:56:16] 2025-10-25 14:55:24,472 | INFO     | adding to output.list: log.46771637._127462.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/a4/82/log.46771637._127462.job.log.tg
[2025-10-25 16:56:16] 2025-10-25 14:55:24,473 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-10-25 16:56:16] 2025-10-25 14:55:24,473 | INFO     | summary of transferred files:
[2025-10-25 16:56:16] 2025-10-25 14:55:24,473 | INFO     |  -- lfn=log.46771637._127462.job.log.tgz.1, status_code=0, status=transferred
[2025-10-25 16:56:16] 2025-10-25 14:55:24,473 | INFO     | stage-out finished correctly
[2025-10-25 16:56:16] 2025-10-25 14:55:25,787 | INFO     | time since job start (4701s) is within the limit (172800.0s)
[2025-10-25 16:56:16] 2025-10-25 14:55:27,608 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-10-25 16:56:16] 2025-10-25 14:55:27,795 | INFO     | time since job start (4703s) is within the limit (172800.0s)
[2025-10-25 16:56:16] 2025-10-25 14:55:29,044 | INFO     | job 6856222538 has state=finished
[2025-10-25 16:56:16] 2025-10-25 14:55:29,044 | INFO     | preparing for final server update for job 6856222538 in state='finished'
[2025-10-25 16:56:16] 2025-10-25 14:55:29,640 | INFO     | sent prmon JSON dictionary to logstash server (urllib method)
[2025-10-25 16:56:16] 2025-10-25 14:55:29,640 | INFO     | this job has now completed (state=finished)
[2025-10-25 16:56:16] 2025-10-25 14:55:29,640 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-10-25 16:56:16] 2025-10-25 14:55:29,640 | INFO     | log transfer has been attempted: DONE
[2025-10-25 16:56:16] 2025-10-25 14:55:29,641 | INFO     | job 6856222538 has finished - writing final server update
[2025-10-25 16:56:16] 2025-10-25 14:55:29,641 | INFO     | total number of processed events: 400 (read)
[2025-10-25 16:56:16] 2025-10-25 14:55:29,641 | INFO     | executing command: lscpu
[2025-10-25 16:56:16] 2025-10-25 14:55:29,662 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-10-25 16:56:16] 2025-10-25 14:55:29,796 | WARNING  | process 4023970 can no longer be monitored (due to stat problems) - aborting
[2025-10-25 16:56:16] 2025-10-25 14:55:29,796 | INFO     | using path: /local/data/boinc/slots/0/PanDA_Pilot-6856222538/memory_monitor_summary.json (trf name=prmon)
[2025-10-25 16:56:16] 2025-10-25 14:55:29,801 | INFO     | time since job start (4705s) is within the limit (172800.0s)
[2025-10-25 16:56:16] 2025-10-25 14:55:29,802 | INFO     | 4706s have passed since pilot start - server update state is 'UPDATING_FINAL'
[2025-10-25 16:56:16] 2025-10-25 14:55:29,836 | INFO     | number of running child processes to parent process 4023970: 1
[2025-10-25 16:56:16] 2025-10-25 14:55:29,837 | INFO     | maximum number of monitored processes: 6
[2025-10-25 16:56:16] 2025-10-25 14:55:31,807 | INFO     | time since job start (4707s) is within the limit (172800.0s)
[2025-10-25 16:56:16] 2025-10-25 14:55:32,339 | INFO     | monitor loop #362: job 0:6856222538 is in state 'finished'
[2025-10-25 16:56:16] 2025-10-25 14:55:32,339 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-25 16:56:16] 2025-10-25 14:55:33,814 | INFO     | time since job start (4709s) is within the limit (172800.0s)
[2025-10-25 16:56:16] 2025-10-25 14:55:34,632 | INFO     | CPU arch script returned: x86-64-v3
[2025-10-25 16:56:16] 2025-10-25 14:55:34,633 | INFO     | found 8 cores (8 cores per socket, 1 socket) HT, CPU MHz: 3820.4
[2025-10-25 16:56:16] 2025-10-25 14:55:34,635 | INFO     | using path: /local/data/boinc/slots/0/PanDA_Pilot-6856222538/memory_monitor_summary.json (trf name=prmon)
[2025-10-25 16:56:16] 2025-10-25 14:55:34,635 | INFO     | extracted standard info from prmon json
[2025-10-25 16:56:16] 2025-10-25 14:55:34,635 | INFO     | extracted standard memory fields from prmon json
[2025-10-25 16:56:16] 2025-10-25 14:55:34,635 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-25 16:56:16] 2025-10-25 14:55:34,635 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-25 16:56:16] 2025-10-25 14:55:34,635 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-25 16:56:16] 2025-10-25 14:55:34,636 | INFO     | fitting pss+swap vs Time
[2025-10-25 16:56:16] 2025-10-25 14:55:34,636 | INFO     | sum of square deviations: 106336877.5
[2025-10-25 16:56:16] 2025-10-25 14:55:34,636 | INFO     | sum of deviations: -8874450830.5
[2025-10-25 16:56:16] 2025-10-25 14:55:34,636 | INFO     | mean x: 1761401856.5
[2025-10-25 16:56:16] 2025-10-25 14:55:34,636 | INFO     | mean y: 2498711.214285714
[2025-10-25 16:56:16] 2025-10-25 14:55:34,636 | INFO     | -- intersect: 147002058372.54315
[2025-10-25 16:56:16] 2025-10-25 14:55:34,636 | INFO     | intersect: 147002058372.54315
[2025-10-25 16:56:16] 2025-10-25 14:55:34,636 | INFO     | chi2: 0.07590916488745715
[2025-10-25 16:56:16] 2025-10-25 14:55:34,636 | INFO     | -- intersect: 147002058372.54315
[2025-10-25 16:56:16] 2025-10-25 14:55:34,636 | INFO     | current memory leak: -83.46 B/s (using 70 data points, chi2=0.08)
[2025-10-25 16:56:16] 2025-10-25 14:55:34,637 | INFO     | could have reported an average CPU frequency of 3705 MHz (6 samples)
[2025-10-25 16:56:16] 2025-10-25 14:55:34,637 | INFO     | ..............................
[2025-10-25 16:56:16] 2025-10-25 14:55:34,637 | INFO     | . Timing measurements:
[2025-10-25 16:56:16] 2025-10-25 14:55:34,637 | INFO     | . get job = 0 s
[2025-10-25 16:56:16] 2025-10-25 14:55:34,637 | INFO     | . initial setup = 1 s
[2025-10-25 16:56:16] 2025-10-25 14:55:34,637 | INFO     | . payload setup = 4 s
[2025-10-25 16:56:16] 2025-10-25 14:55:34,637 | INFO     | . stage-in = 0 s
[2025-10-25 16:56:16] 2025-10-25 14:55:34,637 | INFO     | . payload execution = 4677 s
[2025-10-25 16:56:16] 2025-10-25 14:55:34,637 | INFO     | . stage-out = 0 s
[2025-10-25 16:56:16] 2025-10-25 14:55:34,637 | INFO     | . log creation = 0 s
[2025-10-25 16:56:16] 2025-10-25 14:55:34,637 | INFO     | ..............................
[2025-10-25 16:56:16] 2025-10-25 14:55:34,677 | INFO     | 
[2025-10-25 16:56:16] 2025-10-25 14:55:34,677 | INFO     | job summary report
[2025-10-25 16:56:16] 2025-10-25 14:55:34,677 | INFO     | --------------------------------------------------
[2025-10-25 16:56:16] 2025-10-25 14:55:34,677 | INFO     | PanDA job id: 6856222538
[2025-10-25 16:56:16] 2025-10-25 14:55:34,677 | INFO     | task id: 46771637
[2025-10-25 16:56:16] 2025-10-25 14:55:34,677 | INFO     | errors: (none)
[2025-10-25 16:56:16] 2025-10-25 14:55:34,677 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-25 16:56:16] 2025-10-25 14:55:34,677 | INFO     | pilot state: finished 
[2025-10-25 16:56:16] 2025-10-25 14:55:34,677 | INFO     | transexitcode: 0
[2025-10-25 16:56:16] 2025-10-25 14:55:34,677 | INFO     | exeerrorcode: 0
[2025-10-25 16:56:16] 2025-10-25 14:55:34,677 | INFO     | exeerrordiag: 
[2025-10-25 16:56:16] 2025-10-25 14:55:34,678 | INFO     | exitcode: 0
[2025-10-25 16:56:16] 2025-10-25 14:55:34,678 | INFO     | exitmsg: OK
[2025-10-25 16:56:16] 2025-10-25 14:55:34,678 | INFO     | cpuconsumptiontime: 17701 s
[2025-10-25 16:56:16] 2025-10-25 14:55:34,678 | INFO     | nevents: 400
[2025-10-25 16:56:16] 2025-10-25 14:55:34,678 | INFO     | neventsw: 0
[2025-10-25 16:56:16] 2025-10-25 14:55:34,678 | INFO     | pid: 4023970
[2025-10-25 16:56:16] 2025-10-25 14:55:34,678 | INFO     | pgrp: 4023970
[2025-10-25 16:56:16] 2025-10-25 14:55:34,678 | INFO     | corecount: 4
[2025-10-25 16:56:16] 2025-10-25 14:55:34,678 | INFO     | event service: False
[2025-10-25 16:56:16] 2025-10-25 14:55:34,678 | INFO     | sizes: {0: 2348938, 4: 2349200, 11: 2349228, 4685: 2375561, 4686: 2384620, 4689: 2384620, 4696: 2384942}
[2025-10-25 16:56:16] 2025-10-25 14:55:34,678 | INFO     | --------------------------------------------------
[2025-10-25 16:56:16] 2025-10-25 14:55:34,678 | INFO     | 
[2025-10-25 16:56:16] 2025-10-25 14:55:34,678 | INFO     | executing command: ls -lF /local/data/boinc/slots/0
[2025-10-25 16:56:16] 2025-10-25 14:55:34,697 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-25 16:56:16] 2025-10-25 14:55:34,697 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-25 16:56:16] 2025-10-25 14:55:34,697 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-25 16:56:16] 2025-10-25 14:55:34,697 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-25 16:56:16] 2025-10-25 14:55:34,697 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-25 16:56:16] 2025-10-25 14:55:34,697 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-25 16:56:16] 2025-10-25 14:55:34,697 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-25 16:56:16] 2025-10-25 14:55:34,697 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-25 16:56:16] 2025-10-25 14:55:34,697 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-25 16:56:16] 2025-10-25 14:55:34,697 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-25 16:56:16] 2025-10-25 14:55:34,698 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-25 16:56:16] 2025-10-25 14:55:34,698 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-25 16:56:16] 2025-10-25 14:55:34,698 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-25 16:56:16] 2025-10-25 14:55:34,698 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-25 16:56:16] 2025-10-25 14:55:34,698 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-25 16:56:16] 2025-10-25 14:55:34,698 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-25 16:56:16] 2025-10-25 14:55:34,698 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-25 16:56:16] 2025-10-25 14:55:34,698 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-25 16:56:16] 2025-10-25 14:55:34,698 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-25 16:56:16] 2025-10-25 14:55:34,698 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-25 16:56:16] 2025-10-25 14:55:34,698 | INFO     | job 6856222538 has completed (purged errors)
[2025-10-25 16:56:16] 2025-10-25 14:55:34,698 | INFO     | overall cleanup function is called
[2025-10-25 16:56:16] 2025-10-25 14:55:34,878 | INFO     | PID=4017398 has CPU usage=3.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-25 16:56:16] 2025-10-25 14:55:35,705 | INFO     | --- collectZombieJob: --- 10, [4023970]
[2025-10-25 16:56:16] 2025-10-25 14:55:35,705 | INFO     | zombie collector waiting for pid 4023970
[2025-10-25 16:56:16] 2025-10-25 14:55:35,705 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-25 16:56:16] 2025-10-25 14:55:35,705 | INFO     | collected zombie processes
[2025-10-25 16:56:16] 2025-10-25 14:55:35,705 | INFO     | will attempt to kill all subprocesses of pid=4023970
[2025-10-25 16:56:16] 2025-10-25 14:55:35,749 | INFO     | process IDs to be killed: [4023970] (in reverse order)
[2025-10-25 16:56:16] 2025-10-25 14:55:35,782 | WARNING  | found no corresponding commands to process id(s)
[2025-10-25 16:56:16] 2025-10-25 14:55:35,782 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-25 16:56:16] 2025-10-25 14:55:35,784 | INFO     | did not find any defunct processes belonging to 4023970
[2025-10-25 16:56:16] 2025-10-25 14:55:35,785 | INFO     | did not find any defunct processes belonging to 4023970
[2025-10-25 16:56:16] 2025-10-25 14:55:35,785 | INFO     | ready for new job
[2025-10-25 16:56:16] 2025-10-25 14:55:35,785 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-25 16:56:16] 2025-10-25 14:55:35,786 | INFO     | ***************************************
[2025-10-25 16:56:16] 2025-10-25 14:55:35,786 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-25 16:56:16] 2025-10-25 14:55:35,786 | INFO     | ***************************************
[2025-10-25 16:56:16] 2025-10-25 14:55:35,786 | INFO     | 
[2025-10-25 16:56:16] 2025-10-25 14:55:35,787 | INFO     | architecture information:
[2025-10-25 16:56:16] 2025-10-25 14:55:35,787 | INFO     | executing command: cat /etc/os-release
[2025-10-25 16:56:16] 2025-10-25 14:55:35,801 | INFO     | cat /etc/os-release:
[2025-10-25 16:56:16] NAME="CentOS Linux"
[2025-10-25 16:56:16] VERSION="7 (Core)"
[2025-10-25 16:56:16] ID="centos"
[2025-10-25 16:56:16] ID_LIKE="rhel fedora"
[2025-10-25 16:56:16] VERSION_ID="7"
[2025-10-25 16:56:16] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-25 16:56:16] ANSI_COLOR="0;31"
[2025-10-25 16:56:16] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-25 16:56:16] HOME_URL="https://www.centos.org/"
[2025-10-25 16:56:16] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-25 16:56:16] 
[2025-10-25 16:56:16] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-25 16:56:16] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-25 16:56:16] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-25 16:56:16] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-25 16:56:16] 
[2025-10-25 16:56:16] 2025-10-25 14:55:35,801 | INFO     | ***************************************
[2025-10-25 16:56:16] 2025-10-25 14:55:36,304 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-10-25 16:56:16] 2025-10-25 14:55:36,323 | INFO     | sufficient remaining disk space (329615671296 B)
[2025-10-25 16:56:16] 2025-10-25 14:55:36,323 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-25 16:56:16] 2025-10-25 14:55:36,323 | INFO     | current server update state: UPDATING_FINAL
[2025-10-25 16:56:16] 2025-10-25 14:55:36,323 | INFO     | update_server=False
[2025-10-25 16:56:16] 2025-10-25 14:55:36,323 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-25 16:56:16] 2025-10-25 14:55:36,323 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-25 16:56:16] 2025-10-25 14:55:36,324 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-25 16:56:16] 2025-10-25 14:55:36,324 | INFO     | aborting loop
[2025-10-25 16:56:16] 2025-10-25 14:55:36,429 | INFO     | all job control threads have been joined
[2025-10-25 16:56:16] 2025-10-25 14:55:36,688 | INFO     | all data control threads have been joined
[2025-10-25 16:56:16] 2025-10-25 14:55:36,873 | INFO     | all payload control threads have been joined
[2025-10-25 16:56:16] 2025-10-25 14:55:37,329 | INFO     | [job] queue monitor thread has finished
[2025-10-25 16:56:16] 2025-10-25 14:55:37,329 | INFO     | [job] retrieve thread has finished
[2025-10-25 16:56:16] 2025-10-25 14:55:37,330 | INFO     | [job] job monitor thread has finished
[2025-10-25 16:56:16] 2025-10-25 14:55:37,435 | INFO     | [job] control thread has finished
[2025-10-25 16:56:16] 2025-10-25 14:55:37,532 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-25 16:56:16] 2025-10-25 14:55:37,694 | INFO     | [data] control thread has finished
[2025-10-25 16:56:16] 2025-10-25 14:55:37,878 | INFO     | [payload] control thread has finished
[2025-10-25 16:56:16] 2025-10-25 14:55:37,926 | INFO     | [job] validate thread has finished
[2025-10-25 16:56:16] 2025-10-25 14:55:37,939 | INFO     | [payload] validate_post thread has finished
[2025-10-25 16:56:16] 2025-10-25 14:55:38,090 | INFO     | [job] create_data_payload thread has finished
[2025-10-25 16:56:16] 2025-10-25 14:55:38,115 | INFO     | [payload] validate_pre thread has finished
[2025-10-25 16:56:16] 2025-10-25 14:55:38,163 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-25 16:56:16] 2025-10-25 14:55:38,433 | INFO     | [payload] failed_post thread has finished
[2025-10-25 16:56:16] 2025-10-25 14:55:38,600 | INFO     | [payload] execute_payloads thread has finished
[2025-10-25 16:56:16] 2025-10-25 14:55:38,639 | INFO     | [data] copytool_in thread has finished
[2025-10-25 16:56:16] 2025-10-25 14:55:39,538 | INFO     | [data] copytool_out thread has finished
[2025-10-25 16:56:16] 2025-10-25 14:55:42,170 | INFO     | [data] queue_monitor thread has finished
[2025-10-25 16:56:16] 2025-10-25 14:55:47,044 | INFO     | job.realtimelogging is not enabled
[2025-10-25 16:56:16] 2025-10-25 14:55:48,050 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-25 16:56:16] 2025-10-25 14:56:07,004 | INFO     | PID=4017398 has CPU usage=0.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-25 16:56:16] 2025-10-25 14:56:07,004 | INFO     | found 0 job(s) in 20 queues
[2025-10-25 16:56:16] 2025-10-25 14:56:07,004 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-25 16:56:16] 2025-10-25 14:56:07,004 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-25 16:56:16] 2025-10-25 14:56:10,172 | INFO     | [monitor] cgroup control has ended
[2025-10-25 16:56:16] 2025-10-25 14:56:11,483 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139822637385536)>', '<ExcThread(monitor, started 139821720794880)>']
[2025-10-25 16:56:16] 2025-10-25 14:56:12,031 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-25 16:56:16] 2025-10-25 14:56:12,031 | INFO     | [monitor] control thread has ended
[2025-10-25 16:56:16] 2025-10-25 14:56:16,509 | INFO     | all workflow threads have been joined
[2025-10-25 16:56:16] 2025-10-25 14:56:16,509 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-25 16:56:16] 2025-10-25 14:56:16,510 | INFO     | traces error code: 0
[2025-10-25 16:56:16] 2025-10-25 14:56:16,510 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-25 16:56:16] 2025-10-25 14:56:16,591 [wrapper] ==== pilot stdout END ====
[2025-10-25 16:56:16] 2025-10-25 14:56:16,595 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-25 16:56:16] 2025-10-25 14:56:16,599 [wrapper] pilotpid: 4017398
[2025-10-25 16:56:16] 2025-10-25 14:56:16,603 [wrapper] Pilot exit status: 0
[2025-10-25 16:56:16] 2025-10-25 14:56:16,615 [wrapper] pandaids: 6856222538
[2025-10-25 16:56:16] 2025-10-25 14:56:16,638 [wrapper] cleanup supervisor_pilot 4036202 4017399
[2025-10-25 16:56:16] 2025-10-25 14:56:16,642 [wrapper] Test setup, not cleaning
[2025-10-25 16:56:16] 2025-10-25 14:56:16,646 [wrapper] apfmon messages muted
[2025-10-25 16:56:16] 2025-10-25 14:56:16,649 [wrapper] ==== wrapper stdout END ====
[2025-10-25 16:56:16] 2025-10-25 14:56:16,653 [wrapper] ==== wrapper stderr END ====
[2025-10-25 16:56:16]  *** Error codes and diagnostics ***
[2025-10-25 16:56:16]     "exeErrorCode": 0,
[2025-10-25 16:56:16]     "exeErrorDiag": "",
[2025-10-25 16:56:16]     "pilotErrorCode": 0,
[2025-10-25 16:56:16]     "pilotErrorDiag": "",
[2025-10-25 16:56:16]  *** Listing of results directory ***
[2025-10-25 16:56:16] total 430948
[2025-10-25 16:56:16] -rw-r--r-- 1 boinc boinc    557409 Oct 25 01:40 pilot3.tar.gz
[2025-10-25 16:56:16] -rwx------ 1 boinc boinc     36292 Oct 25 02:03 runpilot2-wrapper.sh
[2025-10-25 16:56:16] -rw-r--r-- 1 boinc boinc      5112 Oct 25 02:03 queuedata.json
[2025-10-25 16:56:16] -rw-r--r-- 1 boinc boinc       100 Oct 25 15:36 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-25 16:56:16] -rwxr-xr-x 1 boinc boinc      7986 Oct 25 15:36 run_atlas
[2025-10-25 16:56:16] -rw-r--r-- 1 boinc boinc       105 Oct 25 15:36 job.xml
[2025-10-25 16:56:16] -rw-r--r-- 2 boinc boinc 227708939 Oct 25 15:36 EVNT.46771634._005079.pool.root.1
[2025-10-25 16:56:16] -rw-r--r-- 2 boinc boinc    569686 Oct 25 15:36 input.tar.gz
[2025-10-25 16:56:16] -rw-r--r-- 2 boinc boinc     15120 Oct 25 15:36 start_atlas.sh
[2025-10-25 16:56:16] drwxrwx--x 2 boinc boinc      4096 Oct 25 15:36 shared
[2025-10-25 16:56:16] -rw-r--r-- 1 boinc boinc         0 Oct 25 15:36 boinc_setup_complete
[2025-10-25 16:56:16] -rw-r--r-- 1 boinc boinc      6378 Oct 25 15:36 init_data.xml
[2025-10-25 16:56:16] -rw-r--r-- 1 boinc boinc         0 Oct 25 15:36 boinc_lockfile
[2025-10-25 16:56:16] -rw-r--r-- 1 boinc boinc      2562 Oct 25 15:36 pandaJob.out
[2025-10-25 16:56:16] -rw------- 1 boinc boinc    978288 Oct 25 15:37 agis_schedconf.cvmfs.json
[2025-10-25 16:56:16] -rw------- 1 boinc boinc   1560772 Oct 25 15:37 agis_ddmendpoints.agis.ALL.json
[2025-10-25 16:56:16] drwx------ 5 boinc boinc      4096 Oct 25 15:37 pilot3
[2025-10-25 16:56:16] -rw------- 1 boinc boinc 207741930 Oct 25 16:55 HITS.46771637._127462.pool.root.1
[2025-10-25 16:56:16] -rw-r--r-- 1 boinc boinc       529 Oct 25 16:55 boinc_task_state.xml
[2025-10-25 16:56:16] -rw------- 1 boinc boinc      1032 Oct 25 16:55 memory_monitor_summary.json
[2025-10-25 16:56:16] -rw------- 1 boinc boinc    272975 Oct 25 16:55 log.46771637._127462.job.log.tgz.1
[2025-10-25 16:56:16] -rw------- 1 boinc boinc        95 Oct 25 16:55 pilot_heartbeat.json
[2025-10-25 16:56:16] -rw------- 1 boinc boinc      7771 Oct 25 16:55 heartbeat.json
[2025-10-25 16:56:16] -rw-r--r-- 1 boinc boinc        27 Oct 25 16:56 wrapper_checkpoint.txt
[2025-10-25 16:56:16] -rw-r--r-- 1 boinc boinc      8192 Oct 25 16:56 boinc_mmap_file
[2025-10-25 16:56:16] -rw------- 1 boinc boinc      4824 Oct 25 16:56 pilotlog.txt
[2025-10-25 16:56:16] -rw------- 1 boinc boinc    694440 Oct 25 16:56 log.46771637._127462.job.log.1
[2025-10-25 16:56:16] -rw------- 1 boinc boinc       357 Oct 25 16:56 output.list
[2025-10-25 16:56:16] -rw-r--r-- 1 boinc boinc       620 Oct 25 16:56 runtime_log
[2025-10-25 16:56:16] -rw------- 1 boinc boinc    983040 Oct 25 16:56 result.tar.gz
[2025-10-25 16:56:16] -rw-r--r-- 1 boinc boinc      8787 Oct 25 16:56 runtime_log.err
[2025-10-25 16:56:16] -rw------- 1 boinc boinc       660 Oct 25 16:56 ToLLDmuvgW8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmYRDODmovb77n.diag
[2025-10-25 16:56:16] -rw-r--r-- 1 boinc boinc     22276 Oct 25 16:56 stderr.txt
[2025-10-25 16:56:16] HITS file was successfully produced:
[2025-10-25 16:56:16] -rw------- 1 boinc boinc 207741930 Oct 25 16:55 shared/HITS.pool.root.1
[2025-10-25 16:56:16]  *** Contents of shared directory: ***
[2025-10-25 16:56:16] total 426796
[2025-10-25 16:56:16] -rw-r--r-- 2 boinc boinc 227708939 Oct 25 15:36 ATLAS.root_0
[2025-10-25 16:56:16] -rw-r--r-- 2 boinc boinc    569686 Oct 25 15:36 input.tar.gz
[2025-10-25 16:56:16] -rw-r--r-- 2 boinc boinc     15120 Oct 25 15:36 start_atlas.sh
[2025-10-25 16:56:16] -rw------- 1 boinc boinc 207741930 Oct 25 16:55 HITS.pool.root.1
[2025-10-25 16:56:16] -rw------- 1 boinc boinc    983040 Oct 25 16:56 result.tar.gz
16:56:38 (4013604): run_atlas exited; CPU time 17716.480296
16:56:38 (4013604): called boinc_finish(0)

</stderr_txt>
]]>

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