Stderr output

<core_client_version>8.2.5</core_client_version>
<![CDATA[
<stderr_txt>
22:24:34 (58549): wrapper (7.7.26015): starting
22:24:34 (58549): wrapper: running run_atlas (--nthreads 8)
[2025-10-24 22:24:34] Arguments: --nthreads 8
[2025-10-24 22:24:34] Threads: 8
[2025-10-24 22:24:34] Checking for CVMFS
[2025-10-24 22:24:34] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-24 22:24:34] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-24 22:24:34] Running cvmfs_config stat atlas.cern.ch
[2025-10-24 22:24:35] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-24 22:24:35] 2.13.2.0 5454 8 44476 152107 3 188 2156430 4096000 2704 130560 0 141235 99.998 1360 1051 http://s1fnal-cvmfs.openhtc.io:8080/cvmfs/atlas.cern.ch DIRECT 1
[2025-10-24 22:24:35] CVMFS is ok
[2025-10-24 22:24:35] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-24 22:24:35] Small home clusters do not require a local http proxy but it is suggested if
[2025-10-24 22:24:35] more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
[2025-10-24 22:24:35] Further information can be found at the LHC@home message board.
[2025-10-24 22:24:35] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-24 22:24:35] Checking for apptainer binary...
[2025-10-24 22:24:35] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-24 22:24:35] Running /usr/bin/apptainer --version
[2025-10-24 22:24:35] apptainer version 1.4.2
[2025-10-24 22:24:35] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-24 22:24:35] 3950x-linux
[2025-10-24 22:24:35] apptainer works
[2025-10-24 22:24:35] Set ATHENA_PROC_NUMBER=8
[2025-10-24 22:24:35] Set ATHENA_CORE_NUMBER=8
[2025-10-24 22:24:35] Starting ATLAS job with PandaID=6856222869
[2025-10-24 22:24:35] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/multiboinc/boinc202/slots/2 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-25 00:07:02]  *** The last 200 lines of the pilot log: ***
[2025-10-25 00:07:02] 2025-10-25 07:05:53,755 | INFO     |  -- lfn=log.46771637._127677.job.log.tgz.1, status_code=0, status=transferred
[2025-10-25 00:07:02] 2025-10-25 07:05:53,756 | INFO     | stage-out finished correctly
[2025-10-25 00:07:02] 2025-10-25 07:05:54,282 | WARNING  | process 69048 can no longer be monitored (due to stat problems) - aborting
[2025-10-25 00:07:02] 2025-10-25 07:05:54,282 | INFO     | using path: /var/lib/multiboinc/boinc202/slots/2/PanDA_Pilot-6856222869/memory_monitor_summary.json (trf name=prmon)
[2025-10-25 00:07:02] 2025-10-25 07:05:54,283 | INFO     | using path: /var/lib/multiboinc/boinc202/slots/2/PanDA_Pilot-6856222869/memory_monitor_summary.json (trf name=prmon)
[2025-10-25 00:07:02] 2025-10-25 07:05:54,283 | WARNING  | memory limits not set in config, using defaults: 'NoneType' object has no attribute 'get'
[2025-10-25 00:07:02] 2025-10-25 07:05:54,283 | WARNING  | maxPSS not found in memory monitor output
[2025-10-25 00:07:02] 2025-10-25 07:05:54,283 | INFO     | payload log (log.EVNTtoHITS) within allowed size limit (2147483648 B): 3219874 B
[2025-10-25 00:07:02] 2025-10-25 07:05:54,283 | INFO     | payload log (payload.stdout) within allowed size limit (2147483648 B): 16058 B
[2025-10-25 00:07:02] 2025-10-25 07:05:54,284 | INFO     | executing command: df -mP /var/lib/multiboinc/boinc202/slots/2
[2025-10-25 00:07:02] 2025-10-25 07:05:54,294 | INFO     | sufficient remaining disk space (193181253632 B)
[2025-10-25 00:07:02] 2025-10-25 07:05:54,295 | INFO     | work directory size check will use 2537553920 B as a max limit (10% grace limit added)
[2025-10-25 00:07:02] 2025-10-25 07:05:54,295 | INFO     | size of work directory /var/lib/multiboinc/boinc202/slots/2/PanDA_Pilot-6856222869: 3527212 B (within 2537553920 B limit)
[2025-10-25 00:07:02] 2025-10-25 07:05:54,295 | INFO     | pfn file=/var/lib/multiboinc/boinc202/slots/2/PanDA_Pilot-6856222869/HITS.46771637._127677.pool.root.1 does not exist (skip from workdir size calculation)
[2025-10-25 00:07:02] 2025-10-25 07:05:54,295 | INFO     | total size of present files: 0 B (workdir size: 3527212 B)
[2025-10-25 00:07:02] 2025-10-25 07:05:54,295 | INFO     | output file size check: skipping output file /var/lib/multiboinc/boinc202/slots/2/PanDA_Pilot-6856222869/HITS.46771637._127677.pool.root.1 since it does not exist
[2025-10-25 00:07:02] 2025-10-25 07:05:54,416 | INFO     | number of running child processes to parent process 69048: 1
[2025-10-25 00:07:02] 2025-10-25 07:05:54,416 | INFO     | maximum number of monitored processes: 6
[2025-10-25 00:07:02] 2025-10-25 07:05:54,500 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-10-25 00:07:02] 2025-10-25 07:05:55,299 | INFO     | time since job start (6069s) is within the limit (172800.0s)
[2025-10-25 00:07:02] 2025-10-25 07:05:56,919 | INFO     | monitor loop #445: job 0:6856222869 is in state 'finished'
[2025-10-25 00:07:02] 2025-10-25 07:05:56,919 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-25 00:07:02] 2025-10-25 07:05:57,304 | INFO     | time since job start (6071s) is within the limit (172800.0s)
[2025-10-25 00:07:02] 2025-10-25 07:05:57,535 | INFO     | job 6856222869 has state=finished
[2025-10-25 00:07:02] 2025-10-25 07:05:57,535 | INFO     | preparing for final server update for job 6856222869 in state='finished'
[2025-10-25 00:07:02] 2025-10-25 07:05:57,535 | INFO     | this job has now completed (state=finished)
[2025-10-25 00:07:02] 2025-10-25 07:05:57,536 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-10-25 00:07:02] 2025-10-25 07:05:57,536 | INFO     | log transfer has been attempted: DONE
[2025-10-25 00:07:02] 2025-10-25 07:05:57,536 | INFO     | job 6856222869 has finished - writing final server update
[2025-10-25 00:07:02] 2025-10-25 07:05:57,536 | INFO     | total number of processed events: 400 (read)
[2025-10-25 00:07:02] 2025-10-25 07:05:57,536 | INFO     | executing command: lscpu
[2025-10-25 00:07:02] 2025-10-25 07:05:57,561 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-10-25 00:07:02] 2025-10-25 07:05:59,310 | INFO     | time since job start (6073s) is within the limit (172800.0s)
[2025-10-25 00:07:02] 2025-10-25 07:05:59,421 | INFO     | monitor loop #446: job 0:6856222869 is in state 'finished'
[2025-10-25 00:07:02] 2025-10-25 07:05:59,421 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-25 00:07:02] 2025-10-25 07:06:00,012 | INFO     | CPU arch script returned: x86-64-v3
[2025-10-25 00:07:02] 2025-10-25 07:06:00,016 | INFO     | found 16 cores (16 cores per socket, 1 socket) HT, CPU MHz: 2916.8301249999995
[2025-10-25 00:07:02] 2025-10-25 07:06:00,019 | INFO     | using path: /var/lib/multiboinc/boinc202/slots/2/PanDA_Pilot-6856222869/memory_monitor_summary.json (trf name=prmon)
[2025-10-25 00:07:02] 2025-10-25 07:06:00,020 | INFO     | extracted standard info from prmon json
[2025-10-25 00:07:02] 2025-10-25 07:06:00,020 | INFO     | extracted standard memory fields from prmon json
[2025-10-25 00:07:02] 2025-10-25 07:06:00,020 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-25 00:07:02] 2025-10-25 07:06:00,020 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-25 00:07:02] 2025-10-25 07:06:00,020 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-25 00:07:02] 2025-10-25 07:06:00,021 | INFO     | fitting pss+swap vs Time
[2025-10-25 00:07:02] 2025-10-25 07:06:00,021 | INFO     | sum of square deviations: 241429643.0
[2025-10-25 00:07:02] 2025-10-25 07:06:00,021 | INFO     | sum of deviations: -2974835129.0
[2025-10-25 00:07:02] 2025-10-25 07:06:00,021 | INFO     | mean x: 1761372990.5
[2025-10-25 00:07:02] 2025-10-25 07:06:00,021 | INFO     | mean y: 2534703.9565217393
[2025-10-25 00:07:02] 2025-10-25 07:06:00,022 | INFO     | -- intersect: 21705728157.343613
[2025-10-25 00:07:02] 2025-10-25 07:06:00,022 | INFO     | intersect: 21705728157.343613
[2025-10-25 00:07:02] 2025-10-25 07:06:00,022 | INFO     | chi2: 0.008925719694077598
[2025-10-25 00:07:02] 2025-10-25 07:06:00,022 | INFO     | -- intersect: 21705728157.343613
[2025-10-25 00:07:02] 2025-10-25 07:06:00,022 | INFO     | current memory leak: -12.32 B/s (using 92 data points, chi2=0.01)
[2025-10-25 00:07:02] 2025-10-25 07:06:00,022 | INFO     | could have reported an average CPU frequency of 3143 MHz (7 samples)
[2025-10-25 00:07:02] 2025-10-25 07:06:00,022 | INFO     | ..............................
[2025-10-25 00:07:02] 2025-10-25 07:06:00,022 | INFO     | . Timing measurements:
[2025-10-25 00:07:02] 2025-10-25 07:06:00,022 | INFO     | . get job = 0 s
[2025-10-25 00:07:02] 2025-10-25 07:06:00,022 | INFO     | . initial setup = 3 s
[2025-10-25 00:07:02] 2025-10-25 07:06:00,022 | INFO     | . payload setup = 4 s
[2025-10-25 00:07:02] 2025-10-25 07:06:00,022 | INFO     | . stage-in = 0 s
[2025-10-25 00:07:02] 2025-10-25 07:06:00,022 | INFO     | . payload execution = 6042 s
[2025-10-25 00:07:02] 2025-10-25 07:06:00,022 | INFO     | . stage-out = 0 s
[2025-10-25 00:07:02] 2025-10-25 07:06:00,022 | INFO     | . log creation = 0 s
[2025-10-25 00:07:02] 2025-10-25 07:06:00,022 | INFO     | ..............................
[2025-10-25 00:07:02] 2025-10-25 07:06:00,400 | INFO     | 
[2025-10-25 00:07:02] 2025-10-25 07:06:00,400 | INFO     | job summary report
[2025-10-25 00:07:02] 2025-10-25 07:06:00,400 | INFO     | --------------------------------------------------
[2025-10-25 00:07:02] 2025-10-25 07:06:00,400 | INFO     | PanDA job id: 6856222869
[2025-10-25 00:07:02] 2025-10-25 07:06:00,400 | INFO     | task id: 46771637
[2025-10-25 00:07:02] 2025-10-25 07:06:00,400 | INFO     | errors: (none)
[2025-10-25 00:07:02] 2025-10-25 07:06:00,400 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-25 00:07:02] 2025-10-25 07:06:00,400 | INFO     | pilot state: finished 
[2025-10-25 00:07:02] 2025-10-25 07:06:00,400 | INFO     | transexitcode: 0
[2025-10-25 00:07:02] 2025-10-25 07:06:00,400 | INFO     | exeerrorcode: 0
[2025-10-25 00:07:02] 2025-10-25 07:06:00,400 | INFO     | exeerrordiag: 
[2025-10-25 00:07:02] 2025-10-25 07:06:00,400 | INFO     | exitcode: 0
[2025-10-25 00:07:02] 2025-10-25 07:06:00,400 | INFO     | exitmsg: OK
[2025-10-25 00:07:02] 2025-10-25 07:06:00,400 | INFO     | cpuconsumptiontime: 37709 s
[2025-10-25 00:07:02] 2025-10-25 07:06:00,400 | INFO     | nevents: 400
[2025-10-25 00:07:02] 2025-10-25 07:06:00,400 | INFO     | neventsw: 0
[2025-10-25 00:07:02] 2025-10-25 07:06:00,400 | INFO     | pid: 69048
[2025-10-25 00:07:02] 2025-10-25 07:06:00,400 | INFO     | pgrp: 69048
[2025-10-25 00:07:02] 2025-10-25 07:06:00,400 | INFO     | corecount: 8
[2025-10-25 00:07:02] 2025-10-25 07:06:00,400 | INFO     | event service: False
[2025-10-25 00:07:02] 2025-10-25 07:06:00,401 | INFO     | sizes: {0: 2348722, 1: 2348977, 4: 2349239, 12: 2349267, 6051: 2376139, 6053: 2385377, 6059: 2385515}
[2025-10-25 00:07:02] 2025-10-25 07:06:00,401 | INFO     | --------------------------------------------------
[2025-10-25 00:07:02] 2025-10-25 07:06:00,401 | INFO     | 
[2025-10-25 00:07:02] 2025-10-25 07:06:00,401 | INFO     | executing command: ls -lF /var/lib/multiboinc/boinc202/slots/2
[2025-10-25 00:07:02] 2025-10-25 07:06:00,414 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-25 00:07:02] 2025-10-25 07:06:00,414 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-25 00:07:02] 2025-10-25 07:06:00,415 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-25 00:07:02] 2025-10-25 07:06:00,415 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-25 00:07:02] 2025-10-25 07:06:00,415 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-25 00:07:02] 2025-10-25 07:06:00,415 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-25 00:07:02] 2025-10-25 07:06:00,415 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-25 00:07:02] 2025-10-25 07:06:00,415 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-25 00:07:02] 2025-10-25 07:06:00,415 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-25 00:07:02] 2025-10-25 07:06:00,415 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-25 00:07:02] 2025-10-25 07:06:00,415 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-25 00:07:02] 2025-10-25 07:06:00,415 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-25 00:07:02] 2025-10-25 07:06:00,415 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-25 00:07:02] 2025-10-25 07:06:00,415 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-25 00:07:02] 2025-10-25 07:06:00,415 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-25 00:07:02] 2025-10-25 07:06:00,415 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-25 00:07:02] 2025-10-25 07:06:00,415 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-25 00:07:02] 2025-10-25 07:06:00,415 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-25 00:07:02] 2025-10-25 07:06:00,415 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-25 00:07:02] 2025-10-25 07:06:00,415 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-25 00:07:02] 2025-10-25 07:06:00,415 | INFO     | job 6856222869 has completed (purged errors)
[2025-10-25 00:07:02] 2025-10-25 07:06:00,415 | INFO     | overall cleanup function is called
[2025-10-25 00:07:02] 2025-10-25 07:06:01,422 | INFO     | --- collectZombieJob: --- 10, [69048]
[2025-10-25 00:07:02] 2025-10-25 07:06:01,423 | INFO     | zombie collector waiting for pid 69048
[2025-10-25 00:07:02] 2025-10-25 07:06:01,423 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-25 00:07:02] 2025-10-25 07:06:01,423 | INFO     | collected zombie processes
[2025-10-25 00:07:02] 2025-10-25 07:06:01,423 | INFO     | will attempt to kill all subprocesses of pid=69048
[2025-10-25 00:07:02] 2025-10-25 07:06:01,544 | INFO     | process IDs to be killed: [69048] (in reverse order)
[2025-10-25 00:07:02] 2025-10-25 07:06:01,592 | WARNING  | found no corresponding commands to process id(s)
[2025-10-25 00:07:02] 2025-10-25 07:06:01,592 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-25 00:07:02] 2025-10-25 07:06:01,597 | INFO     | did not find any defunct processes belonging to 69048
[2025-10-25 00:07:02] 2025-10-25 07:06:01,601 | INFO     | did not find any defunct processes belonging to 69048
[2025-10-25 00:07:02] 2025-10-25 07:06:01,601 | INFO     | ready for new job
[2025-10-25 00:07:02] 2025-10-25 07:06:01,601 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-25 00:07:02] 2025-10-25 07:06:01,602 | INFO     | ***************************************
[2025-10-25 00:07:02] 2025-10-25 07:06:01,602 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-25 00:07:02] 2025-10-25 07:06:01,602 | INFO     | ***************************************
[2025-10-25 00:07:02] 2025-10-25 07:06:01,602 | INFO     | 
[2025-10-25 00:07:02] 2025-10-25 07:06:01,604 | INFO     | architecture information:
[2025-10-25 00:07:02] 2025-10-25 07:06:01,604 | INFO     | executing command: cat /etc/os-release
[2025-10-25 00:07:02] 2025-10-25 07:06:01,615 | INFO     | cat /etc/os-release:
[2025-10-25 00:07:02] NAME="CentOS Linux"
[2025-10-25 00:07:02] VERSION="7 (Core)"
[2025-10-25 00:07:02] ID="centos"
[2025-10-25 00:07:02] ID_LIKE="rhel fedora"
[2025-10-25 00:07:02] VERSION_ID="7"
[2025-10-25 00:07:02] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-25 00:07:02] ANSI_COLOR="0;31"
[2025-10-25 00:07:02] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-25 00:07:02] HOME_URL="https://www.centos.org/"
[2025-10-25 00:07:02] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-25 00:07:02] 
[2025-10-25 00:07:02] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-25 00:07:02] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-25 00:07:02] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-25 00:07:02] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-25 00:07:02] 
[2025-10-25 00:07:02] 2025-10-25 07:06:01,615 | INFO     | ***************************************
[2025-10-25 00:07:02] 2025-10-25 07:06:02,118 | INFO     | executing command: df -mP /var/lib/multiboinc/boinc202/slots/2
[2025-10-25 00:07:02] 2025-10-25 07:06:02,129 | INFO     | sufficient remaining disk space (193184399360 B)
[2025-10-25 00:07:02] 2025-10-25 07:06:02,129 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-25 00:07:02] 2025-10-25 07:06:02,129 | INFO     | current server update state: UPDATING_FINAL
[2025-10-25 00:07:02] 2025-10-25 07:06:02,129 | INFO     | update_server=False
[2025-10-25 00:07:02] 2025-10-25 07:06:02,129 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-25 00:07:02] 2025-10-25 07:06:02,129 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-25 00:07:02] 2025-10-25 07:06:02,926 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-25 00:07:02] 2025-10-25 07:06:02,926 | INFO     | aborting loop
[2025-10-25 00:07:02] 2025-10-25 07:06:03,134 | INFO     | [job] retrieve thread has finished
[2025-10-25 00:07:02] 2025-10-25 07:06:03,148 | INFO     | all job control threads have been joined
[2025-10-25 00:07:02] 2025-10-25 07:06:03,231 | INFO     | all data control threads have been joined
[2025-10-25 00:07:02] 2025-10-25 07:06:03,377 | INFO     | [payload] failed_post thread has finished
[2025-10-25 00:07:02] 2025-10-25 07:06:03,409 | INFO     | [payload] validate_pre thread has finished
[2025-10-25 00:07:02] 2025-10-25 07:06:03,430 | INFO     | all payload control threads have been joined
[2025-10-25 00:07:02] 2025-10-25 07:06:03,635 | INFO     | [payload] execute_payloads thread has finished
[2025-10-25 00:07:02] 2025-10-25 07:06:03,932 | INFO     | [job] job monitor thread has finished
[2025-10-25 00:07:02] 2025-10-25 07:06:04,023 | INFO     | [data] copytool_in thread has finished
[2025-10-25 00:07:02] 2025-10-25 07:06:04,133 | INFO     | [data] copytool_out thread has finished
[2025-10-25 00:07:02] 2025-10-25 07:06:04,153 | INFO     | [job] control thread has finished
[2025-10-25 00:07:02] 2025-10-25 07:06:04,236 | INFO     | [data] control thread has finished
[2025-10-25 00:07:02] 2025-10-25 07:06:04,408 | INFO     | [payload] validate_post thread has finished
[2025-10-25 00:07:02] 2025-10-25 07:06:04,435 | INFO     | [payload] control thread has finished
[2025-10-25 00:07:02] 2025-10-25 07:06:04,509 | INFO     | [job] validate thread has finished
[2025-10-25 00:07:02] 2025-10-25 07:06:04,620 | INFO     | [job] create_data_payload thread has finished
[2025-10-25 00:07:02] 2025-10-25 07:06:05,066 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-25 00:07:02] 2025-10-25 07:06:05,080 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-25 00:07:02] 2025-10-25 07:06:06,085 | INFO     | [job] queue monitor thread has finished
[2025-10-25 00:07:02] 2025-10-25 07:06:09,072 | INFO     | [data] queue_monitor thread has finished
[2025-10-25 00:07:02] 2025-10-25 07:06:13,007 | INFO     | job.realtimelogging is not enabled
[2025-10-25 00:07:02] 2025-10-25 07:06:14,012 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-25 00:07:02] 2025-10-25 07:06:32,534 | INFO     | PID=62386 has CPU usage=2.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-10-25 00:07:02] 2025-10-25 07:06:32,534 | INFO     | .. there are 5 such processes running
[2025-10-25 00:07:02] 2025-10-25 07:06:32,534 | INFO     | found 0 job(s) in 20 queues
[2025-10-25 00:07:02] 2025-10-25 07:06:32,534 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-25 00:07:02] 2025-10-25 07:06:32,534 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-25 00:07:02] 2025-10-25 07:06:55,971 | INFO     | [monitor] cgroup control has ended
[2025-10-25 00:07:02] 2025-10-25 07:06:57,450 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 135487446529856)>', '<ExcThread(monitor, started 135486815332096)>']
[2025-10-25 00:07:02] 2025-10-25 07:06:57,643 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-25 00:07:02] 2025-10-25 07:06:57,643 | INFO     | [monitor] control thread has ended
[2025-10-25 00:07:02] 2025-10-25 07:07:02,457 | INFO     | all workflow threads have been joined
[2025-10-25 00:07:02] 2025-10-25 07:07:02,457 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-25 00:07:02] 2025-10-25 07:07:02,457 | INFO     | traces error code: 0
[2025-10-25 00:07:02] 2025-10-25 07:07:02,457 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-25 00:07:02] 2025-10-25 07:07:02,542 [wrapper] ==== pilot stdout END ====
[2025-10-25 00:07:02] 2025-10-25 07:07:02,544 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-25 00:07:02] 2025-10-25 07:07:02,547 [wrapper] pilotpid: 62386
[2025-10-25 00:07:02] 2025-10-25 07:07:02,550 [wrapper] Pilot exit status: 0
[2025-10-25 00:07:02] 2025-10-25 07:07:02,559 [wrapper] pandaids: 6856222869
[2025-10-25 00:07:02] 2025-10-25 07:07:02,597 [wrapper] cleanup supervisor_pilot  141326 62387
[2025-10-25 00:07:02] 2025-10-25 07:07:02,600 [wrapper] Test setup, not cleaning
[2025-10-25 00:07:02] 2025-10-25 07:07:02,603 [wrapper] apfmon messages muted
[2025-10-25 00:07:02] 2025-10-25 07:07:02,605 [wrapper] ==== wrapper stdout END ====
[2025-10-25 00:07:02] 2025-10-25 07:07:02,608 [wrapper] ==== wrapper stderr END ====
[2025-10-25 00:07:02]  *** Error codes and diagnostics ***
[2025-10-25 00:07:02]     "exeErrorCode": 0,
[2025-10-25 00:07:02]     "exeErrorDiag": "",
[2025-10-25 00:07:02]     "pilotErrorCode": 0,
[2025-10-25 00:07:02]     "pilotErrorDiag": "",
[2025-10-25 00:07:02]  *** Listing of results directory ***
[2025-10-25 00:07:02] total 429892
[2025-10-25 00:07:02] -rw-r--r-- 1 root root    557409 Oct 24 16:40 pilot3.tar.gz
[2025-10-25 00:07:02] -rw-r--r-- 1 root root      5112 Oct 24 17:12 queuedata.json
[2025-10-25 00:07:02] -rwx------ 1 4871 1028     36292 Oct 24 17:14 runpilot2-wrapper.sh
[2025-10-25 00:07:02] -rw-r--r-- 1 root root       100 Oct 24 22:24 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-25 00:07:02] -rwxr-xr-x 1 root root      7986 Oct 24 22:24 run_atlas
[2025-10-25 00:07:02] -rw-r--r-- 1 root root       105 Oct 24 22:24 job.xml
[2025-10-25 00:07:02] -rw-r--r-- 2 root root 227795413 Oct 24 22:24 EVNT.46771634._005089.pool.root.1
[2025-10-25 00:07:02] -rw-r--r-- 2 root root    569690 Oct 24 22:24 input.tar.gz
[2025-10-25 00:07:02] -rw-r--r-- 2 root root     15120 Oct 24 22:24 start_atlas.sh
[2025-10-25 00:07:02] drwxrwx--x 2 root root      4096 Oct 24 22:24 shared
[2025-10-25 00:07:02] -rw-r--r-- 1 root root         0 Oct 24 22:24 boinc_setup_complete
[2025-10-25 00:07:02] -rw-r--r-- 1 root root      7437 Oct 24 22:24 init_data.xml
[2025-10-25 00:07:02] -rw-r--r-- 1 root root         0 Oct 24 22:24 boinc_lockfile
[2025-10-25 00:07:02] -rw-r--r-- 1 root root      2562 Oct 24 22:24 pandaJob.out
[2025-10-25 00:07:02] -rw------- 1 root root    978605 Oct 24 22:24 agis_schedconf.cvmfs.json
[2025-10-25 00:07:02] -rw------- 1 root root   1560772 Oct 24 22:24 agis_ddmendpoints.agis.ALL.json
[2025-10-25 00:07:02] drwxr-xr-x 5  320  320      4096 Oct 24 22:24 pilot3
[2025-10-25 00:07:02] -rw------- 1 root root 206030753 Oct 25 00:05 HITS.46771637._127677.pool.root.1
[2025-10-25 00:07:02] -rw-r--r-- 1 root root       530 Oct 25 00:05 boinc_task_state.xml
[2025-10-25 00:07:02] -rw------- 1 root root      1020 Oct 25 00:05 memory_monitor_summary.json
[2025-10-25 00:07:02] -rw------- 1 root root    345306 Oct 25 00:05 log.46771637._127677.job.log.tgz.1
[2025-10-25 00:07:02] -rw------- 1 root root      7750 Oct 25 00:06 heartbeat.json
[2025-10-25 00:07:02] -rw------- 1 root root        95 Oct 25 00:06 pilot_heartbeat.json
[2025-10-25 00:07:02] -rw-r--r-- 1 root root        27 Oct 25 00:06 wrapper_checkpoint.txt
[2025-10-25 00:07:02] -rw-r--r-- 1 root root      8192 Oct 25 00:06 boinc_mmap_file
[2025-10-25 00:07:02] -rw------- 1 root root      4908 Oct 25 00:07 pilotlog.txt
[2025-10-25 00:07:02] -rw------- 1 root root    891282 Oct 25 00:07 log.46771637._127677.job.log.1
[2025-10-25 00:07:02] -rw------- 1 root root       357 Oct 25 00:07 output.list
[2025-10-25 00:07:02] -rw-r--r-- 1 root root       620 Oct 25 00:07 runtime_log
[2025-10-25 00:07:02] -rw------- 1 root root   1259520 Oct 25 00:07 result.tar.gz
[2025-10-25 00:07:02] -rw------- 1 root root       649 Oct 25 00:07 TAyKDms6gW8n9Rq4apOajLDm4fhM0noT9bVof3QYDmJZmMDmJ1K3an.diag
[2025-10-25 00:07:02] -rw-r--r-- 1 root root      8876 Oct 25 00:07 runtime_log.err
[2025-10-25 00:07:02] -rw-r--r-- 1 root root     22552 Oct 25 00:07 stderr.txt
[2025-10-25 00:07:02] HITS file was successfully produced:
[2025-10-25 00:07:02] -rw------- 1 root root 206030753 Oct 25 00:05 shared/HITS.pool.root.1
[2025-10-25 00:07:02]  *** Contents of shared directory: ***
[2025-10-25 00:07:02] total 425476
[2025-10-25 00:07:02] -rw-r--r-- 2 root root 227795413 Oct 24 22:24 ATLAS.root_0
[2025-10-25 00:07:02] -rw-r--r-- 2 root root    569690 Oct 24 22:24 input.tar.gz
[2025-10-25 00:07:02] -rw-r--r-- 2 root root     15120 Oct 24 22:24 start_atlas.sh
[2025-10-25 00:07:02] -rw------- 1 root root 206030753 Oct 25 00:05 HITS.pool.root.1
[2025-10-25 00:07:02] -rw------- 1 root root   1259520 Oct 25 00:07 result.tar.gz
00:07:04 (58549): run_atlas exited; CPU time 37789.058887
00:07:04 (58549): called boinc_finish(0)

</stderr_txt>
]]>

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