Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
17:47:38 (3704976): wrapper (7.7.26015): starting
17:47:38 (3704976): wrapper: running run_atlas (--nthreads 4)
[2025-10-25 17:47:38] Arguments: --nthreads 4
[2025-10-25 17:47:38] Threads: 4
[2025-10-25 17:47:38] Checking for CVMFS
[2025-10-25 17:47:38] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-25 17:47:38] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-25 17:47:38] Running cvmfs_config stat atlas.cern.ch
[2025-10-25 17:47:38] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-25 17:47:38] 2.9.2.0 1545554 6746 97668 152123 0 57 31349664 36864001 0 130560 0 5561475 99.990 253428 1068 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-10-25 17:47:38] CVMFS is ok
[2025-10-25 17:47:38] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-25 17:47:38] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-25 17:47:38] Further information can be found at the LHC@home message board.
[2025-10-25 17:47:38] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-25 17:47:38] Checking for apptainer binary...
[2025-10-25 17:47:38] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-25 17:47:38] Running /usr/bin/apptainer --version
[2025-10-25 17:47:38] apptainer version 1.4.1-1.1
[2025-10-25 17:47:38] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-25 17:47:38] thA309
[2025-10-25 17:47:38] apptainer works
[2025-10-25 17:47:38] Set ATHENA_PROC_NUMBER=4
[2025-10-25 17:47:38] Set ATHENA_CORE_NUMBER=4
[2025-10-25 17:47:38] Starting ATLAS job with PandaID=6856349648
[2025-10-25 17:47:38] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-25 19:08:00]  *** The last 200 lines of the pilot log: ***
[2025-10-25 19:08:00] 2025-10-25 17:07:29,228 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-25 19:08:00] 2025-10-25 17:07:29,228 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-25 19:08:00] 2025-10-25 17:07:29,228 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-25 19:08:00] 2025-10-25 17:07:29,228 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-25 19:08:00] 2025-10-25 17:07:29,228 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-25 19:08:00] 2025-10-25 17:07:29,228 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-25 19:08:00] 2025-10-25 17:07:29,228 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-25 19:08:00] 2025-10-25 17:07:29,228 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-25 19:08:00] 2025-10-25 17:07:29,228 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-25 19:08:00] 2025-10-25 17:07:29,228 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-25 19:08:00] 2025-10-25 17:07:29,228 | INFO     | job 6856349648 has completed (purged errors)
[2025-10-25 19:08:00] 2025-10-25 17:07:29,228 | INFO     | overall cleanup function is called
[2025-10-25 19:08:00] 2025-10-25 17:07:30,235 | INFO     | --- collectZombieJob: --- 10, [3715331]
[2025-10-25 19:08:00] 2025-10-25 17:07:30,235 | INFO     | zombie collector waiting for pid 3715331
[2025-10-25 19:08:00] 2025-10-25 17:07:30,236 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-25 19:08:00] 2025-10-25 17:07:30,236 | INFO     | collected zombie processes
[2025-10-25 19:08:00] 2025-10-25 17:07:30,236 | INFO     | will attempt to kill all subprocesses of pid=3715331
[2025-10-25 19:08:00] 2025-10-25 17:07:30,287 | INFO     | process IDs to be killed: [3715331] (in reverse order)
[2025-10-25 19:08:00] 2025-10-25 17:07:30,323 | WARNING  | found no corresponding commands to process id(s)
[2025-10-25 19:08:00] 2025-10-25 17:07:30,323 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-25 19:08:00] 2025-10-25 17:07:30,325 | INFO     | did not find any defunct processes belonging to 3715331
[2025-10-25 19:08:00] 2025-10-25 17:07:30,326 | INFO     | did not find any defunct processes belonging to 3715331
[2025-10-25 19:08:00] 2025-10-25 17:07:30,326 | INFO     | ready for new job
[2025-10-25 19:08:00] 2025-10-25 17:07:30,327 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-25 19:08:00] 2025-10-25 17:07:30,327 | INFO     | ***************************************
[2025-10-25 19:08:00] 2025-10-25 17:07:30,327 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-25 19:08:00] 2025-10-25 17:07:30,327 | INFO     | ***************************************
[2025-10-25 19:08:00] 2025-10-25 17:07:30,327 | INFO     | 
[2025-10-25 19:08:00] 2025-10-25 17:07:30,328 | INFO     | architecture information:
[2025-10-25 19:08:00] 2025-10-25 17:07:30,328 | INFO     | executing command: cat /etc/os-release
[2025-10-25 19:08:00] 2025-10-25 17:07:30,343 | INFO     | cat /etc/os-release:
[2025-10-25 19:08:00] NAME="CentOS Linux"
[2025-10-25 19:08:00] VERSION="7 (Core)"
[2025-10-25 19:08:00] ID="centos"
[2025-10-25 19:08:00] ID_LIKE="rhel fedora"
[2025-10-25 19:08:00] VERSION_ID="7"
[2025-10-25 19:08:00] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-25 19:08:00] ANSI_COLOR="0;31"
[2025-10-25 19:08:00] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-25 19:08:00] HOME_URL="https://www.centos.org/"
[2025-10-25 19:08:00] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-25 19:08:00] 
[2025-10-25 19:08:00] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-25 19:08:00] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-25 19:08:00] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-25 19:08:00] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-25 19:08:00] 
[2025-10-25 19:08:00] 2025-10-25 17:07:30,343 | INFO     | ***************************************
[2025-10-25 19:08:00] 2025-10-25 17:07:30,846 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-10-25 19:08:00] 2025-10-25 17:07:30,865 | INFO     | sufficient remaining disk space (228235149312 B)
[2025-10-25 19:08:00] 2025-10-25 17:07:30,865 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-25 19:08:00] 2025-10-25 17:07:30,865 | INFO     | current server update state: UPDATING_FINAL
[2025-10-25 19:08:00] 2025-10-25 17:07:30,865 | INFO     | update_server=False
[2025-10-25 19:08:00] 2025-10-25 17:07:30,865 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-25 19:08:00] 2025-10-25 17:07:30,865 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-25 19:08:00] 2025-10-25 17:07:30,866 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-25 19:08:00] 2025-10-25 17:07:31,122 | INFO     | all data control threads have been joined
[2025-10-25 19:08:00] 2025-10-25 17:07:31,150 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-10-25 19:08:00] 2025-10-25 17:07:31,151 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-10-25 19:08:00] 2025-10-25 17:07:31,151 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-25 19:08:00] 2025-10-25 17:07:31,151 | INFO     | will abort loop
[2025-10-25 19:08:00] 2025-10-25 17:07:31,807 | INFO     | all payload control threads have been joined
[2025-10-25 19:08:00] 2025-10-25 17:07:31,871 | INFO     | [job] retrieve thread has finished
[2025-10-25 19:08:00] 2025-10-25 17:07:31,871 | INFO     | [job] queue monitor thread has finished
[2025-10-25 19:08:00] 2025-10-25 17:07:31,918 | INFO     | [data] copytool_in thread has finished
[2025-10-25 19:08:00] 2025-10-25 17:07:32,128 | INFO     | [data] control thread has finished
[2025-10-25 19:08:00] 2025-10-25 17:07:32,156 | INFO     | [job] job monitor thread has finished
[2025-10-25 19:08:00] 2025-10-25 17:07:32,171 | INFO     | [payload] execute_payloads thread has finished
[2025-10-25 19:08:00] 2025-10-25 17:07:32,204 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-25 19:08:00] 2025-10-25 17:07:32,367 | INFO     | all job control threads have been joined
[2025-10-25 19:08:00] 2025-10-25 17:07:32,651 | INFO     | [job] validate thread has finished
[2025-10-25 19:08:00] 2025-10-25 17:07:32,776 | INFO     | [job] create_data_payload thread has finished
[2025-10-25 19:08:00] 2025-10-25 17:07:32,796 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-25 19:08:00] 2025-10-25 17:07:32,813 | INFO     | [payload] control thread has finished
[2025-10-25 19:08:00] 2025-10-25 17:07:32,862 | INFO     | [payload] validate_pre thread has finished
[2025-10-25 19:08:00] 2025-10-25 17:07:32,871 | INFO     | [data] copytool_out thread has finished
[2025-10-25 19:08:00] 2025-10-25 17:07:33,017 | INFO     | [payload] validate_post thread has finished
[2025-10-25 19:08:00] 2025-10-25 17:07:33,128 | INFO     | [payload] failed_post thread has finished
[2025-10-25 19:08:00] 2025-10-25 17:07:33,373 | INFO     | [job] control thread has finished
[2025-10-25 19:08:00] 2025-10-25 17:07:36,803 | INFO     | [data] queue_monitor thread has finished
[2025-10-25 19:08:00] 2025-10-25 17:07:52,712 | INFO     | [monitor] cgroup control has ended
[2025-10-25 19:08:00] 2025-10-25 17:07:53,420 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140274159015744)>', '<ExcThread(monitor, started 140273053050624)>']
[2025-10-25 19:08:00] 2025-10-25 17:07:58,445 | INFO     | all workflow threads have been joined
[2025-10-25 19:08:00] 2025-10-25 17:07:58,446 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-25 19:08:00] 2025-10-25 17:07:58,446 | INFO     | traces error code: 0
[2025-10-25 19:08:00] 2025-10-25 17:07:58,446 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-25 19:08:00] 2025-10-25 17:08:00,365 | INFO     | PID=3708757 has CPU usage=0.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-25 19:08:00] 2025-10-25 17:08:00,365 | INFO     | found 0 job(s) in 20 queues
[2025-10-25 19:08:00] 2025-10-25 17:08:00,365 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-25 19:08:00] 2025-10-25 17:08:00,365 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-25 19:08:00] 2025-10-25 17:08:00,366 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-25 19:08:00] 2025-10-25 17:08:00,366 | INFO     | [monitor] control thread has ended
[2025-10-25 19:08:00] 2025-10-25 17:08:00,446 [wrapper] ==== pilot stdout END ====
[2025-10-25 19:08:00] 2025-10-25 17:08:00,450 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-25 19:08:00] 2025-10-25 17:08:00,454 [wrapper] pilotpid: 3708757
[2025-10-25 19:08:00] 2025-10-25 17:08:00,458 [wrapper] Pilot exit status: 0
[2025-10-25 19:08:00] 2025-10-25 17:08:00,470 [wrapper] pandaids: 6856349648
[2025-10-25 19:08:00] 2025-10-25 17:08:00,494 [wrapper] cleanup supervisor_pilot 3727683 3708758
[2025-10-25 19:08:00] 2025-10-25 17:08:00,498 [wrapper] Test setup, not cleaning
[2025-10-25 19:08:00] 2025-10-25 17:08:00,502 [wrapper] apfmon messages muted
[2025-10-25 19:08:00] 2025-10-25 17:08:00,505 [wrapper] ==== wrapper stdout END ====
[2025-10-25 19:08:00] 2025-10-25 17:08:00,509 [wrapper] ==== wrapper stderr END ====
[2025-10-25 19:08:00]  *** Error codes and diagnostics ***
[2025-10-25 19:08:00]     "exeErrorCode": 0,
[2025-10-25 19:08:00]     "exeErrorDiag": "",
[2025-10-25 19:08:00]     "pilotErrorCode": 0,
[2025-10-25 19:08:00]     "pilotErrorDiag": "",
[2025-10-25 19:08:00]  *** Listing of results directory ***
[2025-10-25 19:08:00] total 437628
[2025-10-25 19:08:00] -rw-r--r-- 1 boinc boinc    557409 Oct 25 03:37 pilot3.tar.gz
[2025-10-25 19:08:00] -rwx------ 1 boinc boinc     36292 Oct 25 04:38 runpilot2-wrapper.sh
[2025-10-25 19:08:00] -rw-r--r-- 1 boinc boinc      5112 Oct 25 04:38 queuedata.json
[2025-10-25 19:08:00] -rw-r--r-- 1 boinc boinc       100 Oct 25 17:47 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-25 19:08:00] -rwxr-xr-x 1 boinc boinc      7986 Oct 25 17:47 run_atlas
[2025-10-25 19:08:00] -rw-r--r-- 1 boinc boinc       105 Oct 25 17:47 job.xml
[2025-10-25 19:08:00] -rw-r--r-- 2 boinc boinc 228029690 Oct 25 17:47 EVNT.46771634._005157.pool.root.1
[2025-10-25 19:08:00] -rw-r--r-- 2 boinc boinc    569686 Oct 25 17:47 input.tar.gz
[2025-10-25 19:08:00] -rw-r--r-- 2 boinc boinc     15120 Oct 25 17:47 start_atlas.sh
[2025-10-25 19:08:00] drwxrwx--x 2 boinc boinc      4096 Oct 25 17:47 shared
[2025-10-25 19:08:00] -rw-r--r-- 1 boinc boinc         0 Oct 25 17:47 boinc_setup_complete
[2025-10-25 19:08:00] -rw-r--r-- 1 boinc boinc      6377 Oct 25 17:47 init_data.xml
[2025-10-25 19:08:00] -rw-r--r-- 1 boinc boinc         0 Oct 25 17:47 boinc_lockfile
[2025-10-25 19:08:00] -rw-r--r-- 1 boinc boinc      2561 Oct 25 17:47 pandaJob.out
[2025-10-25 19:08:00] -rw------- 1 boinc boinc    978288 Oct 25 17:47 agis_schedconf.cvmfs.json
[2025-10-25 19:08:00] -rw------- 1 boinc boinc   1560772 Oct 25 17:47 agis_ddmendpoints.agis.ALL.json
[2025-10-25 19:08:00] drwx------ 5 boinc boinc      4096 Oct 25 17:47 pilot3
[2025-10-25 19:08:00] -rw------- 1 boinc boinc 214285342 Oct 25 19:06 HITS.46771637._129439.pool.root.1
[2025-10-25 19:08:00] -rw-r--r-- 1 boinc boinc       530 Oct 25 19:07 boinc_task_state.xml
[2025-10-25 19:08:00] -rw------- 1 boinc boinc        95 Oct 25 19:07 pilot_heartbeat.json
[2025-10-25 19:08:00] -rw------- 1 boinc boinc      1032 Oct 25 19:07 memory_monitor_summary.json
[2025-10-25 19:08:00] -rw------- 1 boinc boinc    261650 Oct 25 19:07 log.46771637._129439.job.log.tgz.1
[2025-10-25 19:08:00] -rw------- 1 boinc boinc      7766 Oct 25 19:07 heartbeat.json
[2025-10-25 19:08:00] -rw-r--r-- 1 boinc boinc        27 Oct 25 19:07 wrapper_checkpoint.txt
[2025-10-25 19:08:00] -rw-r--r-- 1 boinc boinc      8192 Oct 25 19:07 boinc_mmap_file
[2025-10-25 19:08:00] -rw------- 1 boinc boinc       747 Oct 25 19:08 pilotlog.txt
[2025-10-25 19:08:00] -rw------- 1 boinc boinc    703464 Oct 25 19:08 log.46771637._129439.job.log.1
[2025-10-25 19:08:00] -rw------- 1 boinc boinc       357 Oct 25 19:08 output.list
[2025-10-25 19:08:00] -rw-r--r-- 1 boinc boinc       620 Oct 25 19:08 runtime_log
[2025-10-25 19:08:00] -rw------- 1 boinc boinc    983040 Oct 25 19:08 result.tar.gz
[2025-10-25 19:08:00] -rw-r--r-- 1 boinc boinc      8777 Oct 25 19:08 runtime_log.err
[2025-10-25 19:08:00] -rw------- 1 boinc boinc       658 Oct 25 19:08 JpfMDmGMjW8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmdqDODmbDfrtn.diag
[2025-10-25 19:08:00] -rw-r--r-- 1 boinc boinc     12059 Oct 25 19:08 stderr.txt
[2025-10-25 19:08:00] HITS file was successfully produced:
[2025-10-25 19:08:00] -rw------- 1 boinc boinc 214285342 Oct 25 19:06 shared/HITS.pool.root.1
[2025-10-25 19:08:00]  *** Contents of shared directory: ***
[2025-10-25 19:08:00] total 433496
[2025-10-25 19:08:00] -rw-r--r-- 2 boinc boinc 228029690 Oct 25 17:47 ATLAS.root_0
[2025-10-25 19:08:00] -rw-r--r-- 2 boinc boinc    569686 Oct 25 17:47 input.tar.gz
[2025-10-25 19:08:00] -rw-r--r-- 2 boinc boinc     15120 Oct 25 17:47 start_atlas.sh
[2025-10-25 19:08:00] -rw------- 1 boinc boinc 214285342 Oct 25 19:06 HITS.pool.root.1
[2025-10-25 19:08:00] -rw------- 1 boinc boinc    983040 Oct 25 19:08 result.tar.gz
19:08:01 (3704976): run_atlas exited; CPU time 18146.119219
19:08:01 (3704976): called boinc_finish(0)

</stderr_txt>
]]>

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