Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
16:58:54 (421863): wrapper (7.7.26015): starting
16:58:54 (421863): wrapper: running run_atlas (--nthreads 4)
[2025-10-25 16:58:54] Arguments: --nthreads 4
[2025-10-25 16:58:54] Threads: 4
[2025-10-25 16:58:54] Checking for CVMFS
[2025-10-25 16:58:55] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-25 16:58:55] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-25 16:58:55] Running cvmfs_config stat atlas.cern.ch
[2025-10-25 16:58:55] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-25 16:58:55] 2.9.2.0 2150638 6768 96216 152121 1 57 25021326 36864001 0 130560 0 6467358 99.992 252815 1135 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-10-25 16:58:55] CVMFS is ok
[2025-10-25 16:58:55] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-25 16:58:55] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-25 16:58:55] Further information can be found at the LHC@home message board.
[2025-10-25 16:58:55] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-25 16:58:55] Checking for apptainer binary...
[2025-10-25 16:58:55] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-25 16:58:55] Running /usr/bin/apptainer --version
[2025-10-25 16:58:55] apptainer version 1.4.1-1.1
[2025-10-25 16:58:55] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-25 16:58:55] thA315b
[2025-10-25 16:58:55] apptainer works
[2025-10-25 16:58:55] Set ATHENA_PROC_NUMBER=4
[2025-10-25 16:58:55] Set ATHENA_CORE_NUMBER=4
[2025-10-25 16:58:55] Starting ATLAS job with PandaID=6856128784
[2025-10-25 16:58:55] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-25 18:08:14]  *** The last 200 lines of the pilot log: ***
[2025-10-25 18:08:14] 2025-10-25 16:07:41,087 | INFO     | job 6856128784 has completed (purged errors)
[2025-10-25 18:08:14] 2025-10-25 16:07:41,087 | INFO     | overall cleanup function is called
[2025-10-25 18:08:14] 2025-10-25 16:07:42,093 | INFO     | --- collectZombieJob: --- 10, [432236]
[2025-10-25 18:08:14] 2025-10-25 16:07:42,093 | INFO     | zombie collector waiting for pid 432236
[2025-10-25 18:08:14] 2025-10-25 16:07:42,093 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-25 18:08:14] 2025-10-25 16:07:42,093 | INFO     | collected zombie processes
[2025-10-25 18:08:14] 2025-10-25 16:07:42,094 | INFO     | will attempt to kill all subprocesses of pid=432236
[2025-10-25 18:08:14] 2025-10-25 16:07:42,138 | INFO     | process IDs to be killed: [432236] (in reverse order)
[2025-10-25 18:08:14] 2025-10-25 16:07:42,165 | WARNING  | found no corresponding commands to process id(s)
[2025-10-25 18:08:14] 2025-10-25 16:07:42,165 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-25 18:08:14] 2025-10-25 16:07:42,167 | INFO     | did not find any defunct processes belonging to 432236
[2025-10-25 18:08:14] 2025-10-25 16:07:42,168 | INFO     | did not find any defunct processes belonging to 432236
[2025-10-25 18:08:14] 2025-10-25 16:07:42,168 | INFO     | ready for new job
[2025-10-25 18:08:14] 2025-10-25 16:07:42,168 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-25 18:08:14] 2025-10-25 16:07:42,169 | INFO     | ***************************************
[2025-10-25 18:08:14] 2025-10-25 16:07:42,169 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-25 18:08:14] 2025-10-25 16:07:42,169 | INFO     | ***************************************
[2025-10-25 18:08:14] 2025-10-25 16:07:42,169 | INFO     | 
[2025-10-25 18:08:14] 2025-10-25 16:07:42,170 | INFO     | architecture information:
[2025-10-25 18:08:14] 2025-10-25 16:07:42,170 | INFO     | executing command: cat /etc/os-release
[2025-10-25 18:08:14] 2025-10-25 16:07:42,179 | INFO     | cat /etc/os-release:
[2025-10-25 18:08:14] NAME="CentOS Linux"
[2025-10-25 18:08:14] VERSION="7 (Core)"
[2025-10-25 18:08:14] ID="centos"
[2025-10-25 18:08:14] ID_LIKE="rhel fedora"
[2025-10-25 18:08:14] VERSION_ID="7"
[2025-10-25 18:08:14] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-25 18:08:14] ANSI_COLOR="0;31"
[2025-10-25 18:08:14] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-25 18:08:14] HOME_URL="https://www.centos.org/"
[2025-10-25 18:08:14] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-25 18:08:14] 
[2025-10-25 18:08:14] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-25 18:08:14] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-25 18:08:14] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-25 18:08:14] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-25 18:08:14] 
[2025-10-25 18:08:14] 2025-10-25 16:07:42,180 | INFO     | ***************************************
[2025-10-25 18:08:14] 2025-10-25 16:07:42,683 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-10-25 18:08:14] 2025-10-25 16:07:42,697 | INFO     | sufficient remaining disk space (334406615040 B)
[2025-10-25 18:08:14] 2025-10-25 16:07:42,697 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-25 18:08:14] 2025-10-25 16:07:42,697 | INFO     | current server update state: UPDATING_FINAL
[2025-10-25 18:08:14] 2025-10-25 16:07:42,697 | INFO     | update_server=False
[2025-10-25 18:08:14] 2025-10-25 16:07:42,697 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-25 18:08:14] 2025-10-25 16:07:42,697 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-25 18:08:14] 2025-10-25 16:07:42,835 | INFO     | all payload control threads have been joined
[2025-10-25 18:08:14] 2025-10-25 16:07:43,219 | INFO     | all data control threads have been joined
[2025-10-25 18:08:14] 2025-10-25 16:07:43,580 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-25 18:08:14] 2025-10-25 16:07:43,641 | INFO     | all job control threads have been joined
[2025-10-25 18:08:14] 2025-10-25 16:07:43,651 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-25 18:08:14] 2025-10-25 16:07:43,651 | INFO     | aborting loop
[2025-10-25 18:08:14] 2025-10-25 16:07:43,703 | INFO     | [job] queue monitor thread has finished
[2025-10-25 18:08:14] 2025-10-25 16:07:43,703 | INFO     | [job] retrieve thread has finished
[2025-10-25 18:08:14] 2025-10-25 16:07:43,745 | INFO     | [payload] failed_post thread has finished
[2025-10-25 18:08:14] 2025-10-25 16:07:43,840 | INFO     | [payload] control thread has finished
[2025-10-25 18:08:14] 2025-10-25 16:07:43,919 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-25 18:08:14] 2025-10-25 16:07:44,179 | INFO     | [data] copytool_in thread has finished
[2025-10-25 18:08:14] 2025-10-25 16:07:44,225 | INFO     | [data] control thread has finished
[2025-10-25 18:08:14] 2025-10-25 16:07:44,282 | INFO     | [payload] validate_post thread has finished
[2025-10-25 18:08:14] 2025-10-25 16:07:44,343 | INFO     | [job] validate thread has finished
[2025-10-25 18:08:14] 2025-10-25 16:07:44,437 | INFO     | [job] create_data_payload thread has finished
[2025-10-25 18:08:14] 2025-10-25 16:07:44,533 | INFO     | [payload] validate_pre thread has finished
[2025-10-25 18:08:14] 2025-10-25 16:07:44,646 | INFO     | [job] control thread has finished
[2025-10-25 18:08:14] 2025-10-25 16:07:44,656 | INFO     | [job] job monitor thread has finished
[2025-10-25 18:08:14] 2025-10-25 16:07:45,113 | INFO     | [payload] execute_payloads thread has finished
[2025-10-25 18:08:14] 2025-10-25 16:07:45,586 | INFO     | [data] copytool_out thread has finished
[2025-10-25 18:08:14] 2025-10-25 16:07:46,106 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-25 18:08:14] 2025-10-25 16:07:50,113 | INFO     | [data] queue_monitor thread has finished
[2025-10-25 18:08:14] 2025-10-25 16:08:06,941 | INFO     | [monitor] cgroup control has ended
[2025-10-25 18:08:14] 2025-10-25 16:08:09,003 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140547525957440)>', '<ExcThread(monitor, started 140547245180672)>']
[2025-10-25 18:08:14] 2025-10-25 16:08:12,727 | INFO     | PID=425665 has CPU usage=1.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-10-25 18:08:14] 2025-10-25 16:08:12,727 | INFO     | found 0 job(s) in 20 queues
[2025-10-25 18:08:14] 2025-10-25 16:08:12,727 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-25 18:08:14] 2025-10-25 16:08:12,727 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-25 18:08:14] 2025-10-25 16:08:12,727 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-25 18:08:14] 2025-10-25 16:08:12,727 | INFO     | [monitor] control thread has ended
[2025-10-25 18:08:14] 2025-10-25 16:08:14,018 | INFO     | all workflow threads have been joined
[2025-10-25 18:08:14] 2025-10-25 16:08:14,018 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-25 18:08:14] 2025-10-25 16:08:14,018 | INFO     | traces error code: 0
[2025-10-25 18:08:14] 2025-10-25 16:08:14,019 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-25 18:08:14] 2025-10-25 16:08:14,071 [wrapper] ==== pilot stdout END ====
[2025-10-25 18:08:14] 2025-10-25 16:08:14,074 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-25 18:08:14] 2025-10-25 16:08:14,077 [wrapper] pilotpid: 425665
[2025-10-25 18:08:14] 2025-10-25 16:08:14,079 [wrapper] Pilot exit status: 0
[2025-10-25 18:08:14] 2025-10-25 16:08:14,087 [wrapper] pandaids: 6856128784
[2025-10-25 18:08:14] 2025-10-25 16:08:14,105 [wrapper] cleanup supervisor_pilot  442061 425666
[2025-10-25 18:08:14] 2025-10-25 16:08:14,107 [wrapper] Test setup, not cleaning
[2025-10-25 18:08:14] 2025-10-25 16:08:14,110 [wrapper] apfmon messages muted
[2025-10-25 18:08:14] 2025-10-25 16:08:14,113 [wrapper] ==== wrapper stdout END ====
[2025-10-25 18:08:14] 2025-10-25 16:08:14,115 [wrapper] ==== wrapper stderr END ====
[2025-10-25 18:08:14]  *** Error codes and diagnostics ***
[2025-10-25 18:08:14]     "exeErrorCode": 0,
[2025-10-25 18:08:14]     "exeErrorDiag": "",
[2025-10-25 18:08:14]     "pilotErrorCode": 0,
[2025-10-25 18:08:14]     "pilotErrorDiag": "",
[2025-10-25 18:08:14]  *** Listing of results directory ***
[2025-10-25 18:08:14] total 431528
[2025-10-25 18:08:14] -rw-r--r-- 1 boinc boinc    557409 Oct 24 23:37 pilot3.tar.gz
[2025-10-25 18:08:14] -rw-r--r-- 1 boinc boinc      5112 Oct 25 00:08 queuedata.json
[2025-10-25 18:08:14] -rwx------ 1 boinc boinc     36292 Oct 25 00:12 runpilot2-wrapper.sh
[2025-10-25 18:08:14] -rw-r--r-- 1 boinc boinc       100 Oct 25 16:58 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-25 18:08:14] -rwxr-xr-x 1 boinc boinc      7986 Oct 25 16:58 run_atlas
[2025-10-25 18:08:14] -rw-r--r-- 1 boinc boinc       105 Oct 25 16:58 job.xml
[2025-10-25 18:08:14] -rw-r--r-- 2 boinc boinc 227872798 Oct 25 16:58 EVNT.46771634._005004.pool.root.1
[2025-10-25 18:08:14] -rw-r--r-- 2 boinc boinc    569688 Oct 25 16:58 input.tar.gz
[2025-10-25 18:08:14] -rw-r--r-- 2 boinc boinc     15120 Oct 25 16:58 start_atlas.sh
[2025-10-25 18:08:14] drwxrwx--x 2 boinc boinc      4096 Oct 25 16:58 shared
[2025-10-25 18:08:14] -rw-r--r-- 1 boinc boinc         0 Oct 25 16:58 boinc_setup_complete
[2025-10-25 18:08:14] -rw-r--r-- 1 boinc boinc      6443 Oct 25 16:58 init_data.xml
[2025-10-25 18:08:14] -rw-r--r-- 1 boinc boinc         0 Oct 25 16:58 boinc_lockfile
[2025-10-25 18:08:14] -rw-r--r-- 1 boinc boinc      2562 Oct 25 16:58 pandaJob.out
[2025-10-25 18:08:14] -rw------- 1 boinc boinc    978288 Oct 25 16:59 agis_schedconf.cvmfs.json
[2025-10-25 18:08:14] -rw------- 1 boinc boinc   1560772 Oct 25 16:59 agis_ddmendpoints.agis.ALL.json
[2025-10-25 18:08:14] drwx------ 5 boinc boinc      4096 Oct 25 16:59 pilot3
[2025-10-25 18:08:14] -rw------- 1 boinc boinc 208352572 Oct 25 18:07 HITS.46771637._125617.pool.root.1
[2025-10-25 18:08:14] -rw------- 1 boinc boinc        95 Oct 25 18:07 pilot_heartbeat.json
[2025-10-25 18:08:14] -rw-r--r-- 1 boinc boinc       529 Oct 25 18:07 boinc_task_state.xml
[2025-10-25 18:08:14] -rw------- 1 boinc boinc      1015 Oct 25 18:07 memory_monitor_summary.json
[2025-10-25 18:08:14] -rw------- 1 boinc boinc    268784 Oct 25 18:07 log.46771637._125617.job.log.tgz.1
[2025-10-25 18:08:14] -rw------- 1 boinc boinc      7749 Oct 25 18:07 heartbeat.json
[2025-10-25 18:08:14] -rw-r--r-- 1 boinc boinc        27 Oct 25 18:08 wrapper_checkpoint.txt
[2025-10-25 18:08:14] -rw-r--r-- 1 boinc boinc      8192 Oct 25 18:08 boinc_mmap_file
[2025-10-25 18:08:14] -rw------- 1 boinc boinc      4751 Oct 25 18:08 pilotlog.txt
[2025-10-25 18:08:14] -rw------- 1 boinc boinc    614308 Oct 25 18:08 log.46771637._125617.job.log.1
[2025-10-25 18:08:14] -rw------- 1 boinc boinc       357 Oct 25 18:08 output.list
[2025-10-25 18:08:14] -rw-r--r-- 1 boinc boinc       620 Oct 25 18:08 runtime_log
[2025-10-25 18:08:14] -rw------- 1 boinc boinc    901120 Oct 25 18:08 result.tar.gz
[2025-10-25 18:08:14] -rw-r--r-- 1 boinc boinc      8782 Oct 25 18:08 runtime_log.err
[2025-10-25 18:08:14] -rw------- 1 boinc boinc       659 Oct 25 18:08 9zyNDmcCfW8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmCDDODmr4OXRn.diag
[2025-10-25 18:08:14] -rw-r--r-- 1 boinc boinc     10803 Oct 25 18:08 stderr.txt
[2025-10-25 18:08:14] HITS file was successfully produced:
[2025-10-25 18:08:14] -rw------- 1 boinc boinc 208352572 Oct 25 18:07 shared/HITS.pool.root.1
[2025-10-25 18:08:14]  *** Contents of shared directory: ***
[2025-10-25 18:08:14] total 427472
[2025-10-25 18:08:14] -rw-r--r-- 2 boinc boinc 227872798 Oct 25 16:58 ATLAS.root_0
[2025-10-25 18:08:14] -rw-r--r-- 2 boinc boinc    569688 Oct 25 16:58 input.tar.gz
[2025-10-25 18:08:14] -rw-r--r-- 2 boinc boinc     15120 Oct 25 16:58 start_atlas.sh
[2025-10-25 18:08:14] -rw------- 1 boinc boinc 208352572 Oct 25 18:07 HITS.pool.root.1
[2025-10-25 18:08:14] -rw------- 1 boinc boinc    901120 Oct 25 18:08 result.tar.gz
18:08:16 (421863): run_atlas exited; CPU time 15443.972635
18:08:16 (421863): called boinc_finish(0)

</stderr_txt>
]]>

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