Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
16:14:59 (1884579): wrapper (7.7.26015): starting
16:14:59 (1884579): wrapper: running run_atlas (--nthreads 4)
[2025-10-25 16:14:59] Arguments: --nthreads 4
[2025-10-25 16:14:59] Threads: 4
[2025-10-25 16:14:59] Checking for CVMFS
[2025-10-25 16:14:59] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-25 16:14:59] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-25 16:14:59] Running cvmfs_config stat atlas.cern.ch
[2025-10-25 16:14:59] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-25 16:14:59] 2.9.2.0 3052 5754 97508 152121 2 56 32151012 36864001 0 130560 0 4886601 99.990 219752 926 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-10-25 16:14:59] CVMFS is ok
[2025-10-25 16:14:59] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-25 16:14:59] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-25 16:14:59] Further information can be found at the LHC@home message board.
[2025-10-25 16:14:59] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-25 16:14:59] Checking for apptainer binary...
[2025-10-25 16:14:59] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-25 16:14:59] Running /usr/bin/apptainer --version
[2025-10-25 16:14:59] apptainer version 1.4.1-1.1
[2025-10-25 16:14:59] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-25 16:14:59] thA334
[2025-10-25 16:14:59] apptainer works
[2025-10-25 16:14:59] Set ATHENA_PROC_NUMBER=4
[2025-10-25 16:14:59] Set ATHENA_CORE_NUMBER=4
[2025-10-25 16:14:59] Starting ATLAS job with PandaID=6856130825
[2025-10-25 16:14:59] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-25 17:37:17]  *** The last 200 lines of the pilot log: ***
[2025-10-25 17:37:17] 2025-10-25 15:36:38,941 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-25 17:37:17] 2025-10-25 15:36:38,941 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-25 17:37:17] 2025-10-25 15:36:38,941 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-25 17:37:17] 2025-10-25 15:36:38,941 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-25 17:37:17] 2025-10-25 15:36:38,941 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-25 17:37:17] 2025-10-25 15:36:38,941 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-25 17:37:17] 2025-10-25 15:36:38,941 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-25 17:37:17] 2025-10-25 15:36:38,941 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-25 17:37:17] 2025-10-25 15:36:38,941 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-25 17:37:17] 2025-10-25 15:36:38,941 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-25 17:37:17] 2025-10-25 15:36:38,941 | INFO     | job 6856130825 has completed (purged errors)
[2025-10-25 17:37:17] 2025-10-25 15:36:38,941 | INFO     | overall cleanup function is called
[2025-10-25 17:37:17] 2025-10-25 15:36:38,974 | INFO     | number of running child processes to parent process 1894929: 1
[2025-10-25 17:37:17] 2025-10-25 15:36:38,974 | INFO     | maximum number of monitored processes: 6
[2025-10-25 17:37:17] 2025-10-25 15:36:38,974 | INFO     | aborting job monitoring since job object (job id=6856130825) has expired
[2025-10-25 17:37:17] 2025-10-25 15:36:39,949 | INFO     | --- collectZombieJob: --- 10, [1894929]
[2025-10-25 17:37:17] 2025-10-25 15:36:39,949 | INFO     | zombie collector waiting for pid 1894929
[2025-10-25 17:37:17] 2025-10-25 15:36:39,949 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-25 17:37:17] 2025-10-25 15:36:39,949 | INFO     | collected zombie processes
[2025-10-25 17:37:17] 2025-10-25 15:36:39,949 | INFO     | will attempt to kill all subprocesses of pid=1894929
[2025-10-25 17:37:17] 2025-10-25 15:36:39,993 | INFO     | process IDs to be killed: [1894929] (in reverse order)
[2025-10-25 17:37:17] 2025-10-25 15:36:40,024 | WARNING  | found no corresponding commands to process id(s)
[2025-10-25 17:37:17] 2025-10-25 15:36:40,024 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-25 17:37:17] 2025-10-25 15:36:40,026 | INFO     | did not find any defunct processes belonging to 1894929
[2025-10-25 17:37:17] 2025-10-25 15:36:40,027 | INFO     | did not find any defunct processes belonging to 1894929
[2025-10-25 17:37:17] 2025-10-25 15:36:40,027 | INFO     | ready for new job
[2025-10-25 17:37:17] 2025-10-25 15:36:40,027 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-25 17:37:17] 2025-10-25 15:36:40,028 | INFO     | ***************************************
[2025-10-25 17:37:17] 2025-10-25 15:36:40,028 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-25 17:37:17] 2025-10-25 15:36:40,028 | INFO     | ***************************************
[2025-10-25 17:37:17] 2025-10-25 15:36:40,028 | INFO     | 
[2025-10-25 17:37:17] 2025-10-25 15:36:40,029 | INFO     | architecture information:
[2025-10-25 17:37:17] 2025-10-25 15:36:40,029 | INFO     | executing command: cat /etc/os-release
[2025-10-25 17:37:17] 2025-10-25 15:36:40,042 | INFO     | cat /etc/os-release:
[2025-10-25 17:37:17] NAME="CentOS Linux"
[2025-10-25 17:37:17] VERSION="7 (Core)"
[2025-10-25 17:37:17] ID="centos"
[2025-10-25 17:37:17] ID_LIKE="rhel fedora"
[2025-10-25 17:37:17] VERSION_ID="7"
[2025-10-25 17:37:17] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-25 17:37:17] ANSI_COLOR="0;31"
[2025-10-25 17:37:17] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-25 17:37:17] HOME_URL="https://www.centos.org/"
[2025-10-25 17:37:17] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-25 17:37:17] 
[2025-10-25 17:37:17] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-25 17:37:17] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-25 17:37:17] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-25 17:37:17] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-25 17:37:17] 
[2025-10-25 17:37:17] 2025-10-25 15:36:40,042 | INFO     | ***************************************
[2025-10-25 17:37:17] 2025-10-25 15:36:40,545 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-10-25 17:37:17] 2025-10-25 15:36:40,562 | INFO     | sufficient remaining disk space (227372171264 B)
[2025-10-25 17:37:17] 2025-10-25 15:36:40,562 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-25 17:37:17] 2025-10-25 15:36:40,563 | INFO     | current server update state: UPDATING_FINAL
[2025-10-25 17:37:17] 2025-10-25 15:36:40,563 | INFO     | update_server=False
[2025-10-25 17:37:17] 2025-10-25 15:36:40,563 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-25 17:37:17] 2025-10-25 15:36:40,563 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-25 17:37:17] 2025-10-25 15:36:40,563 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-25 17:37:17] 2025-10-25 15:36:40,563 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-25 17:37:17] 2025-10-25 15:36:40,563 | INFO     | aborting loop
[2025-10-25 17:37:17] 2025-10-25 15:36:40,917 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-25 17:37:17] 2025-10-25 15:36:41,383 | INFO     | all job control threads have been joined
[2025-10-25 17:37:17] 2025-10-25 15:36:41,512 | INFO     | all data control threads have been joined
[2025-10-25 17:37:17] 2025-10-25 15:36:41,557 | INFO     | all payload control threads have been joined
[2025-10-25 17:37:17] 2025-10-25 15:36:41,568 | INFO     | [job] retrieve thread has finished
[2025-10-25 17:37:17] 2025-10-25 15:36:41,569 | INFO     | [job] queue monitor thread has finished
[2025-10-25 17:37:17] 2025-10-25 15:36:41,569 | INFO     | [job] job monitor thread has finished
[2025-10-25 17:37:17] 2025-10-25 15:36:42,165 | INFO     | [payload] failed_post thread has finished
[2025-10-25 17:37:17] 2025-10-25 15:36:42,281 | INFO     | [payload] execute_payloads thread has finished
[2025-10-25 17:37:17] 2025-10-25 15:36:42,332 | INFO     | [job] validate thread has finished
[2025-10-25 17:37:17] 2025-10-25 15:36:42,389 | INFO     | [job] control thread has finished
[2025-10-25 17:37:17] 2025-10-25 15:36:42,483 | INFO     | [job] create_data_payload thread has finished
[2025-10-25 17:37:17] 2025-10-25 15:36:42,513 | INFO     | [data] control thread has finished
[2025-10-25 17:37:17] 2025-10-25 15:36:42,547 | INFO     | [payload] validate_pre thread has finished
[2025-10-25 17:37:17] 2025-10-25 15:36:42,563 | INFO     | [payload] control thread has finished
[2025-10-25 17:37:17] 2025-10-25 15:36:42,569 | INFO     | [data] copytool_out thread has finished
[2025-10-25 17:37:17] 2025-10-25 15:36:42,835 | INFO     | [data] copytool_in thread has finished
[2025-10-25 17:37:17] 2025-10-25 15:36:43,125 | INFO     | [payload] validate_post thread has finished
[2025-10-25 17:37:17] 2025-10-25 15:36:44,924 | INFO     | [data] queue_monitor thread has finished
[2025-10-25 17:37:17] 2025-10-25 15:36:50,983 | INFO     | job.realtimelogging is not enabled
[2025-10-25 17:37:17] 2025-10-25 15:36:51,989 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-25 17:37:17] 2025-10-25 15:37:10,863 | INFO     | PID=1888369 has CPU usage=1.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-25 17:37:17] 2025-10-25 15:37:10,863 | INFO     | found 0 job(s) in 20 queues
[2025-10-25 17:37:17] 2025-10-25 15:37:10,863 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-25 17:37:17] 2025-10-25 15:37:10,863 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-25 17:37:17] 2025-10-25 15:37:12,341 | INFO     | [monitor] cgroup control has ended
[2025-10-25 17:37:17] 2025-10-25 15:37:12,754 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139629082912576)>', '<ExcThread(monitor, started 139628212369152)>']
[2025-10-25 17:37:17] 2025-10-25 15:37:12,874 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-25 17:37:17] 2025-10-25 15:37:12,875 | INFO     | [monitor] control thread has ended
[2025-10-25 17:37:17] 2025-10-25 15:37:17,780 | INFO     | all workflow threads have been joined
[2025-10-25 17:37:17] 2025-10-25 15:37:17,780 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-25 17:37:17] 2025-10-25 15:37:17,781 | INFO     | traces error code: 0
[2025-10-25 17:37:17] 2025-10-25 15:37:17,781 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-25 17:37:17] 2025-10-25 15:37:17,848 [wrapper] ==== pilot stdout END ====
[2025-10-25 17:37:17] 2025-10-25 15:37:17,852 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-25 17:37:17] 2025-10-25 15:37:17,856 [wrapper] pilotpid: 1888369
[2025-10-25 17:37:17] 2025-10-25 15:37:17,860 [wrapper] Pilot exit status: 0
[2025-10-25 17:37:17] 2025-10-25 15:37:17,870 [wrapper] pandaids: 6856130825
[2025-10-25 17:37:17] 2025-10-25 15:37:17,890 [wrapper] cleanup supervisor_pilot 1907043 1888370
[2025-10-25 17:37:17] 2025-10-25 15:37:17,893 [wrapper] Test setup, not cleaning
[2025-10-25 17:37:17] 2025-10-25 15:37:17,897 [wrapper] apfmon messages muted
[2025-10-25 17:37:17] 2025-10-25 15:37:17,901 [wrapper] ==== wrapper stdout END ====
[2025-10-25 17:37:17] 2025-10-25 15:37:17,904 [wrapper] ==== wrapper stderr END ====
[2025-10-25 17:37:17]  *** Error codes and diagnostics ***
[2025-10-25 17:37:17]     "exeErrorCode": 0,
[2025-10-25 17:37:17]     "exeErrorDiag": "",
[2025-10-25 17:37:17]     "pilotErrorCode": 0,
[2025-10-25 17:37:17]     "pilotErrorDiag": "",
[2025-10-25 17:37:17]  *** Listing of results directory ***
[2025-10-25 17:37:17] total 439352
[2025-10-25 17:37:17] -rw-r--r-- 1 boinc boinc    557409 Oct 25 00:35 pilot3.tar.gz
[2025-10-25 17:37:17] -rw-r--r-- 1 boinc boinc      5112 Oct 25 00:38 queuedata.json
[2025-10-25 17:37:17] -rwx------ 1 boinc boinc     36292 Oct 25 00:42 runpilot2-wrapper.sh
[2025-10-25 17:37:17] -rw-r--r-- 1 boinc boinc       100 Oct 25 16:14 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-25 17:37:17] -rwxr-xr-x 1 boinc boinc      7986 Oct 25 16:14 run_atlas
[2025-10-25 17:37:17] -rw-r--r-- 1 boinc boinc       105 Oct 25 16:14 job.xml
[2025-10-25 17:37:17] -rw-r--r-- 2 boinc boinc 229495379 Oct 25 16:14 EVNT.46771634._005032.pool.root.1
[2025-10-25 17:37:17] -rw-r--r-- 2 boinc boinc    569691 Oct 25 16:14 input.tar.gz
[2025-10-25 17:37:17] -rw-r--r-- 2 boinc boinc     15120 Oct 25 16:14 start_atlas.sh
[2025-10-25 17:37:17] drwxrwx--x 2 boinc boinc      4096 Oct 25 16:14 shared
[2025-10-25 17:37:17] -rw-r--r-- 1 boinc boinc         0 Oct 25 16:14 boinc_setup_complete
[2025-10-25 17:37:17] -rw-r--r-- 1 boinc boinc      6368 Oct 25 16:14 init_data.xml
[2025-10-25 17:37:17] -rw-r--r-- 1 boinc boinc         0 Oct 25 16:14 boinc_lockfile
[2025-10-25 17:37:17] -rw-r--r-- 1 boinc boinc      2562 Oct 25 16:14 pandaJob.out
[2025-10-25 17:37:17] -rw------- 1 boinc boinc    978288 Oct 25 16:15 agis_schedconf.cvmfs.json
[2025-10-25 17:37:17] -rw------- 1 boinc boinc   1560772 Oct 25 16:15 agis_ddmendpoints.agis.ALL.json
[2025-10-25 17:37:17] drwx------ 5 boinc boinc      4096 Oct 25 16:15 pilot3
[2025-10-25 17:37:17] -rw------- 1 boinc boinc 214513675 Oct 25 17:36 HITS.46771637._126293.pool.root.1
[2025-10-25 17:37:17] -rw-r--r-- 1 boinc boinc       529 Oct 25 17:36 boinc_task_state.xml
[2025-10-25 17:37:17] -rw------- 1 boinc boinc      1019 Oct 25 17:36 memory_monitor_summary.json
[2025-10-25 17:37:17] -rw------- 1 boinc boinc    277491 Oct 25 17:36 log.46771637._126293.job.log.tgz.1
[2025-10-25 17:37:17] -rw------- 1 boinc boinc        95 Oct 25 17:36 pilot_heartbeat.json
[2025-10-25 17:37:17] -rw------- 1 boinc boinc      7765 Oct 25 17:36 heartbeat.json
[2025-10-25 17:37:17] -rw-r--r-- 1 boinc boinc        27 Oct 25 17:36 wrapper_checkpoint.txt
[2025-10-25 17:37:17] -rw-r--r-- 1 boinc boinc      8192 Oct 25 17:36 boinc_mmap_file
[2025-10-25 17:37:17] -rw------- 1 boinc boinc      4824 Oct 25 17:37 pilotlog.txt
[2025-10-25 17:37:17] -rw------- 1 boinc boinc    719695 Oct 25 17:37 log.46771637._126293.job.log.1
[2025-10-25 17:37:17] -rw------- 1 boinc boinc       357 Oct 25 17:37 output.list
[2025-10-25 17:37:17] -rw-r--r-- 1 boinc boinc       620 Oct 25 17:37 runtime_log
[2025-10-25 17:37:17] -rw------- 1 boinc boinc   1013760 Oct 25 17:37 result.tar.gz
[2025-10-25 17:37:17] -rw-r--r-- 1 boinc boinc      8777 Oct 25 17:37 runtime_log.err
[2025-10-25 17:37:17] -rw------- 1 boinc boinc       658 Oct 25 17:37 YSxMDm6efW8n9Rq4apOajLDm4fhM0noT9bVof3QYDmROmMDmECa7nn.diag
[2025-10-25 17:37:17] -rw-r--r-- 1 boinc boinc     12273 Oct 25 17:37 stderr.txt
[2025-10-25 17:37:17] HITS file was successfully produced:
[2025-10-25 17:37:17] -rw------- 1 boinc boinc 214513675 Oct 25 17:36 shared/HITS.pool.root.1
[2025-10-25 17:37:17]  *** Contents of shared directory: ***
[2025-10-25 17:37:17] total 435184
[2025-10-25 17:37:17] -rw-r--r-- 2 boinc boinc 229495379 Oct 25 16:14 ATLAS.root_0
[2025-10-25 17:37:17] -rw-r--r-- 2 boinc boinc    569691 Oct 25 16:14 input.tar.gz
[2025-10-25 17:37:17] -rw-r--r-- 2 boinc boinc     15120 Oct 25 16:14 start_atlas.sh
[2025-10-25 17:37:17] -rw------- 1 boinc boinc 214513675 Oct 25 17:36 HITS.pool.root.1
[2025-10-25 17:37:17] -rw------- 1 boinc boinc   1013760 Oct 25 17:37 result.tar.gz
17:37:19 (1884579): run_atlas exited; CPU time 18341.529793
17:37:19 (1884579): called boinc_finish(0)

</stderr_txt>
]]>

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