Stderr output

<core_client_version>8.2.5</core_client_version>
<![CDATA[
<stderr_txt>
17:19:33 (2221984): wrapper (7.7.26015): starting
17:19:33 (2221984): wrapper: running run_atlas (--nthreads 4)
[2025-10-24 17:19:33] Arguments: --nthreads 4
[2025-10-24 17:19:33] Threads: 4
[2025-10-24 17:19:33] Checking for CVMFS
[2025-10-24 17:19:33] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-24 17:19:33] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-24 17:19:33] Running cvmfs_config stat atlas.cern.ch
[2025-10-24 17:19:34] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-24 17:19:34] 2.13.2.0 2134115 48 46940 152100 3 3 1611744 4096000 3655 130560 0 203293 96.782 648608 847 http://s1fnal-cvmfs.openhtc.io:8080/cvmfs/atlas.cern.ch DIRECT 1
[2025-10-24 17:19:34] CVMFS is ok
[2025-10-24 17:19:34] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-24 17:19:34] Small home clusters do not require a local http proxy but it is suggested if
[2025-10-24 17:19:34] more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
[2025-10-24 17:19:34] Further information can be found at the LHC@home message board.
[2025-10-24 17:19:34] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-24 17:19:34] Checking for apptainer binary...
[2025-10-24 17:19:34] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-24 17:19:34] Running /usr/bin/apptainer --version
[2025-10-24 17:19:34] apptainer version 1.4.2
[2025-10-24 17:19:34] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-24 17:19:34] 3950x-linux
[2025-10-24 17:19:34] apptainer works
[2025-10-24 17:19:34] Set ATHENA_PROC_NUMBER=4
[2025-10-24 17:19:34] Set ATHENA_CORE_NUMBER=4
[2025-10-24 17:19:34] Starting ATLAS job with PandaID=6856129676
[2025-10-24 17:19:34] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/multiboinc/boinc202/slots/2 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-24 17:27:57]  *** The last 200 lines of the pilot log: ***
[2025-10-24 17:27:57] 2025-10-25 00:27:22,738 | INFO     | ..............................
[2025-10-24 17:27:57] 2025-10-25 00:27:22,739 | INFO     | . Timing measurements:
[2025-10-24 17:27:57] 2025-10-25 00:27:22,739 | INFO     | . get job = 0 s
[2025-10-24 17:27:57] 2025-10-25 00:27:22,739 | INFO     | . initial setup = 8 s
[2025-10-24 17:27:57] 2025-10-25 00:27:22,739 | INFO     | . payload setup = 4 s
[2025-10-24 17:27:57] 2025-10-25 00:27:22,739 | INFO     | . stage-in = 0 s
[2025-10-24 17:27:57] 2025-10-25 00:27:22,739 | INFO     | . payload execution = 305 s
[2025-10-24 17:27:57] 2025-10-25 00:27:22,739 | INFO     | . stage-out = 0 s
[2025-10-24 17:27:57] 2025-10-25 00:27:22,739 | INFO     | . log creation = 0 s
[2025-10-24 17:27:57] 2025-10-25 00:27:22,739 | INFO     | ..............................
[2025-10-24 17:27:57] 2025-10-25 00:27:22,739 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-10-24 17:27:57] 2025-10-25 00:27:22,739 | INFO     | executing command: tail -n 20 /var/lib/multiboinc/boinc202/slots/2/PanDA_Pilot-6856129676/pilotlog.txt
[2025-10-24 17:27:57] 2025-10-25 00:27:22,752 | WARNING  | detected the following tail of warning/fatal messages in the pilot log:
[2025-10-24 17:27:57] - Log from pilotlog.txt -
[2025-10-24 17:27:57] 2025-10-25 00:27:22,736 | INFO     | using path: /var/lib/multiboinc/boinc202/slots/2/PanDA_Pilot-6856129676/memory_monitor_summary.json (trf name=prmon)
[2025-10-24 17:27:57] 2025-10-25 00:27:22,737 | INFO     | extracted standard info from prmon json
[2025-10-24 17:27:57] 2025-10-25 00:27:22,737 | INFO     | extracted standard memory fields from prmon json
[2025-10-24 17:27:57] 2025-10-25 00:27:22,737 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-24 17:27:57] 2025-10-25 00:27:22,737 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-24 17:27:57] 2025-10-25 00:27:22,737 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-24 17:27:57] 2025-10-25 00:27:22,738 | WARNING  | wrong length of table data, x=[1761351614.0, 1761351675.0, 1761351736.0, 1761351797.0, 1761351858.0], y=[1641.0, 979910.0, 1763725.0, 2028564.0, 2194952.0] (must b
[2025-10-24 17:27:57] 2025-10-25 00:27:22,738 | INFO     | could have reported an average CPU frequency of 3508 MHz (4 samples)
[2025-10-24 17:27:57] 2025-10-25 00:27:22,738 | INFO     | ..............................
[2025-10-24 17:27:57] 2025-10-25 00:27:22,739 | INFO     | . Timing measurements:
[2025-10-24 17:27:57] 2025-10-25 00:27:22,739 | INFO     | . get job = 0 s
[2025-10-24 17:27:57] 2025-10-25 00:27:22,739 | INFO     | . initial setup = 8 s
[2025-10-24 17:27:57] 2025-10-25 00:27:22,739 | INFO     | . payload setup = 4 s
[2025-10-24 17:27:57] 2025-10-25 00:27:22,739 | INFO     | . stage-in = 0 s
[2025-10-24 17:27:57] 2025-10-25 00:27:22,739 | INFO     | . payload execution = 305 s
[2025-10-24 17:27:57] 2025-10-25 00:27:22,739 | INFO     | . stage-out = 0 s
[2025-10-24 17:27:57] 2025-10-25 00:27:22,739 | INFO     | . log creation = 0 s
[2025-10-24 17:27:57] 2025-10-25 00:27:22,739 | INFO     | ..............................
[2025-10-24 17:27:57] 2025-10-25 00:27:22,739 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-10-24 17:27:57] 2025-10-25 00:27:22,739 | INFO     | executing command: tail -n 20 /var/lib/multiboinc/boinc202/slots/2/PanDA_Pilot-6856129676/pilotlog.txt
[2025-10-24 17:27:57] 2025-10-25 00:27:22,753 | WARNING  | 
[2025-10-24 17:27:57] [begin log extracts]
[2025-10-24 17:27:57] - Log from pilotlog.txt -
[2025-10-24 17:27:57] 2025-10-25 00:27:22,736 | INFO     | using path: /var/lib/multiboinc/boinc202/slots/2/PanDA_Pilot-6856129676/memory_monitor_summary.json (trf name=prmon)
[2025-10-24 17:27:57] 2025-10-25 00:27:22,737 | INFO     | extracted standard info from prmon json
[2025-10-24 17:27:57] 2025-10-25 00:27:22,737 | INFO     | extracted standard memory fields from prmon json
[2025-10-24 17:27:57] 2025-10-25 00:27:22,737 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-24 17:27:57] 2025-10-25 00:27:22,737 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-24 17:27:57] 2025-10-25 00:27:22,737 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-24 17:27:57] 2025-10-25 00:27:22,738 | WARNING  | wrong length of table data, x=[1761351614.0, 1761351675.0, 1761351736.0, 1761351797.0, 1761351858.0], y=[1641.0, 979910.0, 1763725.0, 2028564.0, 2194952.0] (must b
[2025-10-24 17:27:57] 2025-10-25 00:27:22,738 | INFO     | could have reported an average CPU frequency of 3508 MHz (4 samples)
[2025-10-24 17:27:57] 2025-10-25 00:27:22,738 | INFO     | ..............................
[2025-10-24 17:27:57] 2025-10-25 00:27:22,739 | INFO     | . Timing measurements:
[2025-10-24 17:27:57] 2025-10-25 00:27:22,739 | INFO     | . get job = 0 s
[2025-10-24 17:27:57] 2025-10-25 00:27:22,739 | INFO     | . initial setup = 8 s
[2025-10-24 17:27:57] 2025-10-25 00:27:22,739 | INFO     | . payload setup = 4 s
[2025-10-24 17:27:57] 2025-10-25 00:27:22,739 | INFO     | . stage-in = 0 s
[2025-10-24 17:27:57] 2025-10-25 00:27:22,739 | INFO     | . payload execution = 305 s
[2025-10-24 17:27:57] 2025-10-25 00:27:22,739 | INFO     | . stage-out = 0 s
[2025-10-24 17:27:57] 2025-10-25 00:27:22,739 | INFO     | . log creation = 0 s
[2025-10-24 17:27:57] 2025-10-25 00:27:22,739 | INFO     | ..............................
[2025-10-24 17:27:57] 2025-10-25 00:27:22,739 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-10-24 17:27:57] 2025-10-25 00:27:22,739 | INFO     | executing command: tail -n 20 /var/lib/multiboinc/boinc202/slots/2/PanDA_Pilot-6856129676/pilotlog.txt
[2025-10-24 17:27:57] [end log extracts]
[2025-10-24 17:27:57] 2025-10-25 00:27:22,753 | WARNING  | pilotErrorCodes = [1305, 1328] (will report primary/first error code)
[2025-10-24 17:27:57] 2025-10-25 00:27:22,753 | WARNING  | pilotErrorDiags = ["Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: EVNTtoHITS got a 
[2025-10-24 17:27:57] 2025-10-25 00:27:22,829 | INFO     | 
[2025-10-24 17:27:57] 2025-10-25 00:27:22,829 | INFO     | job summary report
[2025-10-24 17:27:57] 2025-10-25 00:27:22,829 | INFO     | --------------------------------------------------
[2025-10-24 17:27:57] 2025-10-25 00:27:22,829 | INFO     | PanDA job id: 6856129676
[2025-10-24 17:27:57] 2025-10-25 00:27:22,829 | INFO     | task id: 46771637
[2025-10-24 17:27:57] 2025-10-25 00:27:22,829 | INFO     | error 1/2: 1305: Failed to execute payload:PyJobTransforms.transform.execute 2025-10-25 00:25:11,405 CRITICAL Transform executor raised TransformValidationExceptio
[2025-10-24 17:27:57] 2025-10-25 00:27:22,829 | INFO     | error 2/2: 1328: Invalid memory reference or a segmentation fault in payload: EVNTtoHITS got a SIGSEGV signal (exit code 139); Possible memory leak: 'pss' slope: 8
[2025-10-24 17:27:57] 2025-10-25 00:27:22,829 | INFO     | pilot error code: 1328
[2025-10-24 17:27:57] 2025-10-25 00:27:22,830 | INFO     | pilot error diag: Invalid memory reference or a segmentation fault in payload: EVNTtoHITS got a SIGSEGV signal (exit code 139); Possible memory leak: 'pss' slope: 
[2025-10-24 17:27:57] 2025-10-25 00:27:22,830 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-24 17:27:57] 2025-10-25 00:27:22,830 | INFO     | pilot state: failed 
[2025-10-24 17:27:57] 2025-10-25 00:27:22,830 | INFO     | transexitcode: 65
[2025-10-24 17:27:57] 2025-10-25 00:27:22,830 | INFO     | exeerrorcode: 0
[2025-10-24 17:27:57] 2025-10-25 00:27:22,830 | INFO     | exeerrordiag: 
[2025-10-24 17:27:57] 2025-10-25 00:27:22,830 | INFO     | exitcode: 65
[2025-10-24 17:27:57] 2025-10-25 00:27:22,830 | INFO     | exitmsg: EVNTtoHITS got a SIGSEGV signal (exit code 139); Possible memory leak: 'pss' slope: 8419.72 KB/s
[2025-10-24 17:27:57] 2025-10-25 00:27:22,830 | INFO     | cpuconsumptiontime: 270 s
[2025-10-24 17:27:57] 2025-10-25 00:27:22,830 | INFO     | nevents: 0
[2025-10-24 17:27:57] 2025-10-25 00:27:22,830 | INFO     | neventsw: 0
[2025-10-24 17:27:57] 2025-10-25 00:27:22,830 | INFO     | pid: 2237442
[2025-10-24 17:27:57] 2025-10-25 00:27:22,830 | INFO     | pgrp: 2237442
[2025-10-24 17:27:57] 2025-10-25 00:27:22,830 | INFO     | corecount: 4
[2025-10-24 17:27:57] 2025-10-25 00:27:22,830 | INFO     | event service: False
[2025-10-24 17:27:57] 2025-10-25 00:27:22,830 | INFO     | sizes: {0: 2348107, 1: 2348977, 4: 2349239, 12: 2349267, 315: 2378139, 316: 2378139, 438: 2378461}
[2025-10-24 17:27:57] 2025-10-25 00:27:22,830 | INFO     | --------------------------------------------------
[2025-10-24 17:27:57] 2025-10-25 00:27:22,831 | INFO     | 
[2025-10-24 17:27:57] 2025-10-25 00:27:22,831 | INFO     | executing command: ls -lF /var/lib/multiboinc/boinc202/slots/2
[2025-10-24 17:27:57] 2025-10-25 00:27:22,853 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-24 17:27:57] 2025-10-25 00:27:22,854 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-24 17:27:57] 2025-10-25 00:27:22,854 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-24 17:27:57] 2025-10-25 00:27:22,854 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-24 17:27:57] 2025-10-25 00:27:22,854 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-24 17:27:57] 2025-10-25 00:27:22,854 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-24 17:27:57] 2025-10-25 00:27:22,854 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-24 17:27:57] 2025-10-25 00:27:22,854 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-24 17:27:57] 2025-10-25 00:27:22,854 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-24 17:27:57] 2025-10-25 00:27:22,854 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-24 17:27:57] 2025-10-25 00:27:22,854 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-24 17:27:57] 2025-10-25 00:27:22,854 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-24 17:27:57] 2025-10-25 00:27:22,854 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-24 17:27:57] 2025-10-25 00:27:22,855 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-24 17:27:57] 2025-10-25 00:27:22,855 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-24 17:27:57] 2025-10-25 00:27:22,855 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-24 17:27:57] 2025-10-25 00:27:22,855 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-24 17:27:57] 2025-10-25 00:27:22,855 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-24 17:27:57] 2025-10-25 00:27:22,855 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-24 17:27:57] 2025-10-25 00:27:22,855 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-24 17:27:57] 2025-10-25 00:27:22,855 | INFO     | job 6856129676 has completed (purged errors)
[2025-10-24 17:27:57] 2025-10-25 00:27:22,855 | INFO     | overall cleanup function is called
[2025-10-24 17:27:57] 2025-10-25 00:27:23,863 | INFO     | --- collectZombieJob: --- 10, [2237442]
[2025-10-24 17:27:57] 2025-10-25 00:27:23,864 | INFO     | zombie collector waiting for pid 2237442
[2025-10-24 17:27:57] 2025-10-25 00:27:23,864 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-24 17:27:57] 2025-10-25 00:27:23,864 | INFO     | collected zombie processes
[2025-10-24 17:27:57] 2025-10-25 00:27:23,864 | INFO     | will attempt to kill all subprocesses of pid=2237442
[2025-10-24 17:27:57] 2025-10-25 00:27:24,072 | INFO     | process IDs to be killed: [2237442] (in reverse order)
[2025-10-24 17:27:57] 2025-10-25 00:27:24,177 | WARNING  | found no corresponding commands to process id(s)
[2025-10-24 17:27:57] 2025-10-25 00:27:24,177 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-24 17:27:57] 2025-10-25 00:27:24,183 | INFO     | did not find any defunct processes belonging to 2237442
[2025-10-24 17:27:57] 2025-10-25 00:27:24,195 | INFO     | did not find any defunct processes belonging to 2237442
[2025-10-24 17:27:57] 2025-10-25 00:27:24,196 | INFO     | ready for new job
[2025-10-24 17:27:57] 2025-10-25 00:27:24,196 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-24 17:27:57] 2025-10-25 00:27:24,197 | INFO     | ***************************************
[2025-10-24 17:27:57] 2025-10-25 00:27:24,197 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-24 17:27:57] 2025-10-25 00:27:24,197 | INFO     | ***************************************
[2025-10-24 17:27:57] 2025-10-25 00:27:24,197 | INFO     | 
[2025-10-24 17:27:57] 2025-10-25 00:27:24,199 | INFO     | architecture information:
[2025-10-24 17:27:57] 2025-10-25 00:27:24,199 | INFO     | executing command: cat /etc/os-release
[2025-10-24 17:27:57] 2025-10-25 00:27:24,220 | INFO     | cat /etc/os-release:
[2025-10-24 17:27:57] NAME="CentOS Linux"
[2025-10-24 17:27:57] VERSION="7 (Core)"
[2025-10-24 17:27:57] ID="centos"
[2025-10-24 17:27:57] ID_LIKE="rhel fedora"
[2025-10-24 17:27:57] VERSION_ID="7"
[2025-10-24 17:27:57] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-24 17:27:57] ANSI_COLOR="0;31"
[2025-10-24 17:27:57] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-24 17:27:57] HOME_URL="https://www.centos.org/"
[2025-10-24 17:27:57] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-24 17:27:57] 
[2025-10-24 17:27:57] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-24 17:27:57] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-24 17:27:57] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-24 17:27:57] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-24 17:27:57] 
[2025-10-24 17:27:57] 2025-10-25 00:27:24,220 | INFO     | ***************************************
[2025-10-24 17:27:57] 2025-10-25 00:27:24,724 | INFO     | executing command: df -mP /var/lib/multiboinc/boinc202/slots/2
[2025-10-24 17:27:57] 2025-10-25 00:27:24,743 | INFO     | sufficient remaining disk space (191243485184 B)
[2025-10-24 17:27:57] 2025-10-25 00:27:24,743 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-24 17:27:57] 2025-10-25 00:27:24,743 | INFO     | current server update state: UPDATING_FINAL
[2025-10-24 17:27:57] 2025-10-25 00:27:24,743 | INFO     | update_server=False
[2025-10-24 17:27:57] 2025-10-25 00:27:24,743 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-24 17:27:57] 2025-10-25 00:27:24,744 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-24 17:27:57] 2025-10-25 00:27:24,744 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-24 17:27:57] 2025-10-25 00:27:24,789 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-10-24 17:27:57] 2025-10-25 00:27:24,790 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-10-24 17:27:57] 2025-10-25 00:27:24,790 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-24 17:27:57] 2025-10-25 00:27:24,790 | INFO     | will abort loop
[2025-10-24 17:27:57] 2025-10-25 00:27:24,881 | INFO     | all payload control threads have been joined
[2025-10-24 17:27:57] 2025-10-25 00:27:25,171 | INFO     | all data control threads have been joined
[2025-10-24 17:27:57] 2025-10-25 00:27:25,749 | INFO     | [job] queue monitor thread has finished
[2025-10-24 17:27:57] 2025-10-25 00:27:25,749 | INFO     | [job] retrieve thread has finished
[2025-10-24 17:27:57] 2025-10-25 00:27:25,777 | INFO     | [payload] validate_pre thread has finished
[2025-10-24 17:27:57] 2025-10-25 00:27:25,794 | INFO     | [job] job monitor thread has finished
[2025-10-24 17:27:57] 2025-10-25 00:27:25,886 | INFO     | [payload] control thread has finished
[2025-10-24 17:27:57] 2025-10-25 00:27:25,920 | INFO     | [payload] failed_post thread has finished
[2025-10-24 17:27:57] 2025-10-25 00:27:25,952 | INFO     | all job control threads have been joined
[2025-10-24 17:27:57] 2025-10-25 00:27:26,122 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-24 17:27:57] 2025-10-25 00:27:26,177 | INFO     | [data] control thread has finished
[2025-10-24 17:27:57] 2025-10-25 00:27:26,270 | INFO     | [data] copytool_in thread has finished
[2025-10-24 17:27:57] 2025-10-25 00:27:26,351 | INFO     | [payload] validate_post thread has finished
[2025-10-24 17:27:57] 2025-10-25 00:27:26,861 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-24 17:27:57] 2025-10-25 00:27:26,958 | INFO     | [job] control thread has finished
[2025-10-24 17:27:57] 2025-10-25 00:27:26,980 | INFO     | [job] validate thread has finished
[2025-10-24 17:27:57] 2025-10-25 00:27:26,981 | INFO     | [payload] execute_payloads thread has finished
[2025-10-24 17:27:57] 2025-10-25 00:27:27,137 | INFO     | [job] create_data_payload thread has finished
[2025-10-24 17:27:57] 2025-10-25 00:27:28,127 | INFO     | [data] copytool_out thread has finished
[2025-10-24 17:27:57] 2025-10-25 00:27:28,751 | INFO     | [data] queue_monitor thread has finished
[2025-10-24 17:27:57] 2025-10-25 00:27:50,818 | INFO     | [monitor] cgroup control has ended
[2025-10-24 17:27:57] 2025-10-25 00:27:52,440 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 133389495211840)>', '<ExcThread(monitor, started 133388715415296)>']
[2025-10-24 17:27:57] 2025-10-25 00:27:55,342 | INFO     | PID=2225816 has CPU usage=1.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-24 17:27:57] 2025-10-25 00:27:55,342 | INFO     | .. there are 9 such processes running
[2025-10-24 17:27:57] 2025-10-25 00:27:55,342 | INFO     | found 0 job(s) in 20 queues
[2025-10-24 17:27:57] 2025-10-25 00:27:55,342 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-24 17:27:57] 2025-10-25 00:27:55,343 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-24 17:27:57] 2025-10-25 00:27:55,343 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-24 17:27:57] 2025-10-25 00:27:55,343 | INFO     | [monitor] control thread has ended
[2025-10-24 17:27:57] 2025-10-25 00:27:57,466 | INFO     | all workflow threads have been joined
[2025-10-24 17:27:57] 2025-10-25 00:27:57,467 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-24 17:27:57] 2025-10-25 00:27:57,467 | INFO     | traces error code: 0
[2025-10-24 17:27:57] 2025-10-25 00:27:57,467 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-24 17:27:57] 2025-10-25 00:27:57,623 [wrapper] ==== pilot stdout END ====
[2025-10-24 17:27:57] 2025-10-25 00:27:57,627 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-24 17:27:57] 2025-10-25 00:27:57,635 [wrapper] pilotpid: 2225816
[2025-10-24 17:27:57] 2025-10-25 00:27:57,642 [wrapper] Pilot exit status: 0
[2025-10-24 17:27:57] 2025-10-25 00:27:57,716 [wrapper] pandaids: 6856129676
[2025-10-24 17:27:57] 2025-10-25 00:27:57,801 [wrapper] cleanup supervisor_pilot 2225822 2225817
[2025-10-24 17:27:57] 2025-10-25 00:27:57,809 [wrapper] Test setup, not cleaning
[2025-10-24 17:27:57] 2025-10-25 00:27:57,813 [wrapper] apfmon messages muted
[2025-10-24 17:27:57] 2025-10-25 00:27:57,821 [wrapper] ==== wrapper stdout END ====
[2025-10-24 17:27:57] 2025-10-25 00:27:57,826 [wrapper] ==== wrapper stderr END ====
[2025-10-24 17:27:57]  *** Error codes and diagnostics ***
[2025-10-24 17:27:57]     "exeErrorCode": 0,
[2025-10-24 17:27:57]     "exeErrorDiag": "",
[2025-10-24 17:27:57]     "pilotErrorCode": 1305,
[2025-10-24 17:27:57]     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: EVNTtoHITS got a SIGSEGV signal (exit code 139); Possible memory leak: 'pss' slope: 8419.72 KB/s",
[2025-10-24 17:27:57]  *** Listing of results directory ***
[2025-10-24 17:27:57] total 225140
[2025-10-24 17:27:57] -rw-r--r-- 1 root root    557409 Oct 24 14:37 pilot3.tar.gz
[2025-10-24 17:27:57] -rwx------ 1 4871 1028     36292 Oct 24 15:27 runpilot2-wrapper.sh
[2025-10-24 17:27:57] -rw-r--r-- 1 root root      5112 Oct 24 15:27 queuedata.json
[2025-10-24 17:27:57] -rw-r--r-- 1 root root       100 Oct 24 17:19 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-24 17:27:57] -rwxr-xr-x 1 root root      7986 Oct 24 17:19 run_atlas
[2025-10-24 17:27:57] -rw-r--r-- 1 root root       105 Oct 24 17:19 job.xml
[2025-10-24 17:27:57] -rw-r--r-- 2 root root 226068671 Oct 24 17:19 EVNT.46771634._005022.pool.root.1
[2025-10-24 17:27:57] -rw-r--r-- 2 root root    569683 Oct 24 17:19 input.tar.gz
[2025-10-24 17:27:57] -rw-r--r-- 2 root root     15120 Oct 24 17:19 start_atlas.sh
[2025-10-24 17:27:57] drwxrwx--x 2 root root      4096 Oct 24 17:19 shared
[2025-10-24 17:27:57] -rw-r--r-- 1 root root         0 Oct 24 17:19 boinc_setup_complete
[2025-10-24 17:27:57] -rw-r--r-- 1 root root      7435 Oct 24 17:19 init_data.xml
[2025-10-24 17:27:57] -rw-r--r-- 1 root root         0 Oct 24 17:19 boinc_lockfile
[2025-10-24 17:27:57] -rw-r--r-- 1 root root      2562 Oct 24 17:19 pandaJob.out
[2025-10-24 17:27:57] -rw------- 1 root root    978589 Oct 24 17:19 agis_schedconf.cvmfs.json
[2025-10-24 17:27:57] -rw------- 1 root root   1560772 Oct 24 17:19 agis_ddmendpoints.agis.ALL.json
[2025-10-24 17:27:57] drwxr-xr-x 5  320  320      4096 Oct 24 17:19 pilot3
[2025-10-24 17:27:57] -rw-r--r-- 1 root root       526 Oct 24 17:25 boinc_task_state.xml
[2025-10-24 17:27:57] -rw------- 1 root root      1008 Oct 24 17:25 memory_monitor_summary.json
[2025-10-24 17:27:57] -rw------- 1 root root    162752 Oct 24 17:25 log.46771637._126054.job.log.tgz.1
[2025-10-24 17:27:57] -rw------- 1 root root      8642 Oct 24 17:27 heartbeat.json
[2025-10-24 17:27:57] -rw-r--r-- 1 root root        24 Oct 24 17:27 wrapper_checkpoint.txt
[2025-10-24 17:27:57] -rw-r--r-- 1 root root      8192 Oct 24 17:27 boinc_mmap_file
[2025-10-24 17:27:57] -rw------- 1 root root        95 Oct 24 17:27 pilot_heartbeat.json
[2025-10-24 17:27:57] -rw------- 1 root root      5024 Oct 24 17:27 pilotlog.txt
[2025-10-24 17:27:57] -rw------- 1 root root    125060 Oct 24 17:27 log.46771637._126054.job.log.1
[2025-10-24 17:27:57] -rw------- 1 root root       188 Oct 24 17:27 output.list
[2025-10-24 17:27:57] -rw-r--r-- 1 root root       620 Oct 24 17:27 runtime_log
[2025-10-24 17:27:57] -rw------- 1 root root    307200 Oct 24 17:27 result.tar.gz
[2025-10-24 17:27:57] -rw-r--r-- 1 root root      8723 Oct 24 17:27 runtime_log.err
[2025-10-24 17:27:57] -rw------- 1 root root       640 Oct 24 17:27 eziMDmTRfW8n9Rq4apOajLDm4fhM0noT9bVof3QYDmMLmMDmUVb6gm.diag
[2025-10-24 17:27:57] -rw-r--r-- 1 root root     22333 Oct 24 17:27 stderr.txt
[2025-10-24 17:27:57] No HITS result produced
[2025-10-24 17:27:57]  *** Contents of shared directory: ***
[2025-10-24 17:27:57] total 221648
[2025-10-24 17:27:57] -rw-r--r-- 2 root root 226068671 Oct 24 17:19 ATLAS.root_0
[2025-10-24 17:27:57] -rw-r--r-- 2 root root    569683 Oct 24 17:19 input.tar.gz
[2025-10-24 17:27:57] -rw-r--r-- 2 root root     15120 Oct 24 17:19 start_atlas.sh
[2025-10-24 17:27:57] -rw------- 1 root root    307200 Oct 24 17:27 result.tar.gz
17:27:59 (2221984): run_atlas exited; CPU time 267.836105
17:27:59 (2221984): called boinc_finish(0)

</stderr_txt>
]]>

©2025 CERN