Stderr output

<core_client_version>8.0.4</core_client_version>
<![CDATA[
<stderr_txt>
14:05:41 (3448044): wrapper (7.7.26015): starting
14:05:41 (3448044): wrapper: running run_atlas (--nthreads 3)
[2025-10-25 14:05:41] Arguments: --nthreads 3
[2025-10-25 14:05:41] Threads: 3
[2025-10-25 14:05:41] Checking for CVMFS
[2025-10-25 14:05:41] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-25 14:05:42] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-25 14:05:42] Running cvmfs_config stat atlas.cern.ch
[2025-10-25 14:05:42] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-25 14:05:42] 2.9.2.0 1615638 6346 87488 152117 3 57 24755184 36864001 0 130560 0 4809083 99.989 239214 939 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-10-25 14:05:42] CVMFS is ok
[2025-10-25 14:05:42] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-25 14:05:42] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-25 14:05:42] Further information can be found at the LHC@home message board.
[2025-10-25 14:05:42] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-25 14:05:42] Checking for apptainer binary...
[2025-10-25 14:05:42] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-25 14:05:42] Running /usr/bin/apptainer --version
[2025-10-25 14:05:42] apptainer version 1.3.6-4.2
[2025-10-25 14:05:42] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-25 14:05:42] thA325b
[2025-10-25 14:05:42] apptainer works
[2025-10-25 14:05:42] Set ATHENA_PROC_NUMBER=3
[2025-10-25 14:05:42] Set ATHENA_CORE_NUMBER=3
[2025-10-25 14:05:42] Starting ATLAS job with PandaID=6858037342
[2025-10-25 14:05:42] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-25 15:33:17]  *** The last 200 lines of the pilot log: ***
[2025-10-25 15:33:17]  protocol_id=None
[2025-10-25 15:33:17]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-10-25 15:33:17]  replicas=None
[2025-10-25 15:33:17]  scope=mc23_13p6TeV
[2025-10-25 15:33:17]  status=None
[2025-10-25 15:33:17]  status_code=0
[2025-10-25 15:33:17]  storage_token=
[2025-10-25 15:33:17]  surl=/local/data/boinc/slots/0/PanDA_Pilot-6858037342/log.46965159._000854.job.log.tgz.1
[2025-10-25 15:33:17]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/fa/9d/log.46965159._000854.job.log.tgz.1
[2025-10-25 15:33:17]  workdir=None
[2025-10-25 15:33:17] ]
[2025-10-25 15:33:17] 2025-10-25 13:32:39,561 | INFO     | transferring file log.46965159._000854.job.log.tgz.1 from /local/data/boinc/slots/0/PanDA_Pilot-6858037342/log.46965159._000854.job.log.tgz.1 to /local/data/boinc/
[2025-10-25 15:33:17] 2025-10-25 13:32:39,561 | INFO     | executing command: /usr/bin/env mv /local/data/boinc/slots/0/PanDA_Pilot-6858037342/log.46965159._000854.job.log.tgz.1 /local/data/boinc/slots/0/log.46965159._0008
[2025-10-25 15:33:17] 2025-10-25 13:32:39,573 | INFO     | adding to output.list: log.46965159._000854.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/fa/9d/log.46965159._000854.job.log.tg
[2025-10-25 15:33:17] 2025-10-25 13:32:39,573 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-10-25 15:33:17] 2025-10-25 13:32:39,574 | INFO     | summary of transferred files:
[2025-10-25 15:33:17] 2025-10-25 13:32:39,574 | INFO     |  -- lfn=log.46965159._000854.job.log.tgz.1, status_code=0, status=transferred
[2025-10-25 15:33:17] 2025-10-25 13:32:39,574 | INFO     | stage-out finished correctly
[2025-10-25 15:33:17] 2025-10-25 13:32:39,605 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-10-25 15:33:17] 2025-10-25 13:32:39,906 | INFO     | time since job start (5212s) is within the limit (172800.0s)
[2025-10-25 15:33:17] 2025-10-25 13:32:40,638 | INFO     | job 6858037342 has state=finished
[2025-10-25 15:33:17] 2025-10-25 13:32:40,638 | INFO     | preparing for final server update for job 6858037342 in state='finished'
[2025-10-25 15:33:17] 2025-10-25 13:32:40,638 | INFO     | this job has now completed (state=finished)
[2025-10-25 15:33:17] 2025-10-25 13:32:40,638 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-10-25 15:33:17] 2025-10-25 13:32:40,639 | INFO     | log transfer has been attempted: DONE
[2025-10-25 15:33:17] 2025-10-25 13:32:40,639 | INFO     | job 6858037342 has finished - writing final server update
[2025-10-25 15:33:17] 2025-10-25 13:32:40,639 | INFO     | total number of processed events: 400 (read)
[2025-10-25 15:33:17] 2025-10-25 13:32:40,639 | INFO     | executing command: lscpu
[2025-10-25 15:33:17] 2025-10-25 13:32:40,653 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-10-25 15:33:17] 2025-10-25 13:32:41,912 | INFO     | time since job start (5214s) is within the limit (172800.0s)
[2025-10-25 15:33:17] 2025-10-25 13:32:43,917 | INFO     | time since job start (5216s) is within the limit (172800.0s)
[2025-10-25 15:33:17] 2025-10-25 13:32:44,252 | WARNING  | process 3458210 can no longer be monitored (due to stat problems) - aborting
[2025-10-25 15:33:17] 2025-10-25 13:32:44,252 | INFO     | using path: /local/data/boinc/slots/0/PanDA_Pilot-6858037342/memory_monitor_summary.json (trf name=prmon)
[2025-10-25 15:33:17] 2025-10-25 13:32:44,290 | INFO     | number of running child processes to parent process 3458210: 1
[2025-10-25 15:33:17] 2025-10-25 13:32:44,290 | INFO     | maximum number of monitored processes: 6
[2025-10-25 15:33:17] 2025-10-25 13:32:44,995 | INFO     | PID=3451771 has CPU usage=3.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-25 15:33:17] 2025-10-25 13:32:45,247 | INFO     | CPU arch script returned: x86-64-v3
[2025-10-25 15:33:17] 2025-10-25 13:32:45,248 | INFO     | found 6 cores (6 cores per socket, 1 socket) HT, CPU MHz: 3484.9197500000005
[2025-10-25 15:33:17] 2025-10-25 13:32:45,249 | INFO     | using path: /local/data/boinc/slots/0/PanDA_Pilot-6858037342/memory_monitor_summary.json (trf name=prmon)
[2025-10-25 15:33:17] 2025-10-25 13:32:45,250 | INFO     | extracted standard info from prmon json
[2025-10-25 15:33:17] 2025-10-25 13:32:45,250 | INFO     | extracted standard memory fields from prmon json
[2025-10-25 15:33:17] 2025-10-25 13:32:45,250 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-25 15:33:17] 2025-10-25 13:32:45,250 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-25 15:33:17] 2025-10-25 13:32:45,250 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-25 15:33:17] 2025-10-25 13:32:45,250 | INFO     | fitting pss+swap vs Time
[2025-10-25 15:33:17] 2025-10-25 13:32:45,251 | INFO     | sum of square deviations: 152858680.0
[2025-10-25 15:33:17] 2025-10-25 13:32:45,251 | INFO     | sum of deviations: -999374650.9999999
[2025-10-25 15:33:17] 2025-10-25 13:32:45,251 | INFO     | mean x: 1761396650.0
[2025-10-25 15:33:17] 2025-10-25 13:32:45,251 | INFO     | mean y: 2377592.2025316455
[2025-10-25 15:33:17] 2025-10-25 13:32:45,251 | INFO     | -- intersect: 11518211448.45668
[2025-10-25 15:33:17] 2025-10-25 13:32:45,251 | INFO     | intersect: 11518211448.45668
[2025-10-25 15:33:17] 2025-10-25 13:32:45,251 | INFO     | chi2: 0.05347623284640181
[2025-10-25 15:33:17] 2025-10-25 13:32:45,251 | INFO     | -- intersect: 11518211448.45668
[2025-10-25 15:33:17] 2025-10-25 13:32:45,251 | INFO     | current memory leak: -6.54 B/s (using 79 data points, chi2=0.05)
[2025-10-25 15:33:17] 2025-10-25 13:32:45,251 | INFO     | could have reported an average CPU frequency of 3755 MHz (6 samples)
[2025-10-25 15:33:17] 2025-10-25 13:32:45,251 | INFO     | ..............................
[2025-10-25 15:33:17] 2025-10-25 13:32:45,251 | INFO     | . Timing measurements:
[2025-10-25 15:33:17] 2025-10-25 13:32:45,251 | INFO     | . get job = 0 s
[2025-10-25 15:33:17] 2025-10-25 13:32:45,251 | INFO     | . initial setup = 1 s
[2025-10-25 15:33:17] 2025-10-25 13:32:45,251 | INFO     | . payload setup = 2 s
[2025-10-25 15:33:17] 2025-10-25 13:32:45,251 | INFO     | . stage-in = 0 s
[2025-10-25 15:33:17] 2025-10-25 13:32:45,251 | INFO     | . payload execution = 5192 s
[2025-10-25 15:33:17] 2025-10-25 13:32:45,251 | INFO     | . stage-out = 0 s
[2025-10-25 15:33:17] 2025-10-25 13:32:45,251 | INFO     | . log creation = 0 s
[2025-10-25 15:33:17] 2025-10-25 13:32:45,251 | INFO     | ..............................
[2025-10-25 15:33:17] 2025-10-25 13:32:45,281 | INFO     | 
[2025-10-25 15:33:17] 2025-10-25 13:32:45,281 | INFO     | job summary report
[2025-10-25 15:33:17] 2025-10-25 13:32:45,281 | INFO     | --------------------------------------------------
[2025-10-25 15:33:17] 2025-10-25 13:32:45,281 | INFO     | PanDA job id: 6858037342
[2025-10-25 15:33:17] 2025-10-25 13:32:45,281 | INFO     | task id: 46965159
[2025-10-25 15:33:17] 2025-10-25 13:32:45,281 | INFO     | errors: (none)
[2025-10-25 15:33:17] 2025-10-25 13:32:45,281 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-25 15:33:17] 2025-10-25 13:32:45,281 | INFO     | pilot state: finished 
[2025-10-25 15:33:17] 2025-10-25 13:32:45,281 | INFO     | transexitcode: 0
[2025-10-25 15:33:17] 2025-10-25 13:32:45,281 | INFO     | exeerrorcode: 0
[2025-10-25 15:33:17] 2025-10-25 13:32:45,281 | INFO     | exeerrordiag: 
[2025-10-25 15:33:17] 2025-10-25 13:32:45,281 | INFO     | exitcode: 0
[2025-10-25 15:33:17] 2025-10-25 13:32:45,281 | INFO     | exitmsg: OK
[2025-10-25 15:33:17] 2025-10-25 13:32:45,281 | INFO     | cpuconsumptiontime: 14990 s
[2025-10-25 15:33:17] 2025-10-25 13:32:45,281 | INFO     | nevents: 400
[2025-10-25 15:33:17] 2025-10-25 13:32:45,281 | INFO     | neventsw: 0
[2025-10-25 15:33:17] 2025-10-25 13:32:45,281 | INFO     | pid: 3458210
[2025-10-25 15:33:17] 2025-10-25 13:32:45,281 | INFO     | pgrp: 3458210
[2025-10-25 15:33:17] 2025-10-25 13:32:45,281 | INFO     | corecount: 3
[2025-10-25 15:33:17] 2025-10-25 13:32:45,281 | INFO     | event service: False
[2025-10-25 15:33:17] 2025-10-25 13:32:45,281 | INFO     | sizes: {0: 2348919, 2: 2349181, 11: 2349209, 5198: 2375850, 5199: 2384909, 5205: 2385047}
[2025-10-25 15:33:17] 2025-10-25 13:32:45,281 | INFO     | --------------------------------------------------
[2025-10-25 15:33:17] 2025-10-25 13:32:45,281 | INFO     | 
[2025-10-25 15:33:17] 2025-10-25 13:32:45,281 | INFO     | executing command: ls -lF /local/data/boinc/slots/0
[2025-10-25 15:33:17] 2025-10-25 13:32:45,293 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-25 15:33:17] 2025-10-25 13:32:45,293 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-25 15:33:17] 2025-10-25 13:32:45,294 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-25 15:33:17] 2025-10-25 13:32:45,294 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-25 15:33:17] 2025-10-25 13:32:45,294 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-25 15:33:17] 2025-10-25 13:32:45,294 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-25 15:33:17] 2025-10-25 13:32:45,294 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-25 15:33:17] 2025-10-25 13:32:45,294 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-25 15:33:17] 2025-10-25 13:32:45,294 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-25 15:33:17] 2025-10-25 13:32:45,294 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-25 15:33:17] 2025-10-25 13:32:45,294 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-25 15:33:17] 2025-10-25 13:32:45,294 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-25 15:33:17] 2025-10-25 13:32:45,294 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-25 15:33:17] 2025-10-25 13:32:45,294 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-25 15:33:17] 2025-10-25 13:32:45,294 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-25 15:33:17] 2025-10-25 13:32:45,294 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-25 15:33:17] 2025-10-25 13:32:45,294 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-25 15:33:17] 2025-10-25 13:32:45,294 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-25 15:33:17] 2025-10-25 13:32:45,294 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-25 15:33:17] 2025-10-25 13:32:45,294 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-25 15:33:17] 2025-10-25 13:32:45,294 | INFO     | job 6858037342 has completed (purged errors)
[2025-10-25 15:33:17] 2025-10-25 13:32:45,294 | INFO     | overall cleanup function is called
[2025-10-25 15:33:17] 2025-10-25 13:32:46,301 | INFO     | --- collectZombieJob: --- 10, [3458210]
[2025-10-25 15:33:17] 2025-10-25 13:32:46,301 | INFO     | zombie collector waiting for pid 3458210
[2025-10-25 15:33:17] 2025-10-25 13:32:46,301 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-25 15:33:17] 2025-10-25 13:32:46,301 | INFO     | collected zombie processes
[2025-10-25 15:33:17] 2025-10-25 13:32:46,301 | INFO     | will attempt to kill all subprocesses of pid=3458210
[2025-10-25 15:33:17] 2025-10-25 13:32:46,340 | INFO     | process IDs to be killed: [3458210] (in reverse order)
[2025-10-25 15:33:17] 2025-10-25 13:32:46,364 | WARNING  | found no corresponding commands to process id(s)
[2025-10-25 15:33:17] 2025-10-25 13:32:46,364 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-25 15:33:17] 2025-10-25 13:32:46,365 | INFO     | did not find any defunct processes belonging to 3458210
[2025-10-25 15:33:17] 2025-10-25 13:32:46,366 | INFO     | did not find any defunct processes belonging to 3458210
[2025-10-25 15:33:17] 2025-10-25 13:32:46,366 | INFO     | ready for new job
[2025-10-25 15:33:17] 2025-10-25 13:32:46,366 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-25 15:33:17] 2025-10-25 13:32:46,367 | INFO     | ***************************************
[2025-10-25 15:33:17] 2025-10-25 13:32:46,367 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-25 15:33:17] 2025-10-25 13:32:46,367 | INFO     | ***************************************
[2025-10-25 15:33:17] 2025-10-25 13:32:46,367 | INFO     | 
[2025-10-25 15:33:17] 2025-10-25 13:32:46,367 | INFO     | architecture information:
[2025-10-25 15:33:17] 2025-10-25 13:32:46,367 | INFO     | executing command: cat /etc/os-release
[2025-10-25 15:33:17] 2025-10-25 13:32:46,376 | INFO     | cat /etc/os-release:
[2025-10-25 15:33:17] NAME="CentOS Linux"
[2025-10-25 15:33:17] VERSION="7 (Core)"
[2025-10-25 15:33:17] ID="centos"
[2025-10-25 15:33:17] ID_LIKE="rhel fedora"
[2025-10-25 15:33:17] VERSION_ID="7"
[2025-10-25 15:33:17] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-25 15:33:17] ANSI_COLOR="0;31"
[2025-10-25 15:33:17] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-25 15:33:17] HOME_URL="https://www.centos.org/"
[2025-10-25 15:33:17] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-25 15:33:17] 
[2025-10-25 15:33:17] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-25 15:33:17] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-25 15:33:17] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-25 15:33:17] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-25 15:33:17] 
[2025-10-25 15:33:17] 2025-10-25 13:32:46,376 | INFO     | ***************************************
[2025-10-25 15:33:17] 2025-10-25 13:32:46,879 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-10-25 15:33:17] 2025-10-25 13:32:46,890 | INFO     | sufficient remaining disk space (234480467968 B)
[2025-10-25 15:33:17] 2025-10-25 13:32:46,891 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-25 15:33:17] 2025-10-25 13:32:46,891 | INFO     | current server update state: UPDATING_FINAL
[2025-10-25 15:33:17] 2025-10-25 13:32:46,891 | INFO     | update_server=False
[2025-10-25 15:33:17] 2025-10-25 13:32:46,891 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-25 15:33:17] 2025-10-25 13:32:46,891 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-25 15:33:17] 2025-10-25 13:32:47,494 | INFO     | all payload control threads have been joined
[2025-10-25 15:33:17] 2025-10-25 13:32:47,616 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-25 15:33:17] 2025-10-25 13:32:47,653 | INFO     | all data control threads have been joined
[2025-10-25 15:33:17] 2025-10-25 13:32:47,799 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-25 15:33:17] 2025-10-25 13:32:47,799 | INFO     | aborting loop
[2025-10-25 15:33:17] 2025-10-25 13:32:47,896 | INFO     | [job] retrieve thread has finished
[2025-10-25 15:33:17] 2025-10-25 13:32:47,897 | INFO     | [job] queue monitor thread has finished
[2025-10-25 15:33:17] 2025-10-25 13:32:48,163 | INFO     | all job control threads have been joined
[2025-10-25 15:33:17] 2025-10-25 13:32:48,192 | INFO     | [data] copytool_in thread has finished
[2025-10-25 15:33:17] 2025-10-25 13:32:48,316 | INFO     | [payload] validate_post thread has finished
[2025-10-25 15:33:17] 2025-10-25 13:32:48,499 | INFO     | [payload] control thread has finished
[2025-10-25 15:33:17] 2025-10-25 13:32:48,659 | INFO     | [data] control thread has finished
[2025-10-25 15:33:17] 2025-10-25 13:32:48,698 | INFO     | [job] validate thread has finished
[2025-10-25 15:33:17] 2025-10-25 13:32:48,698 | INFO     | [job] create_data_payload thread has finished
[2025-10-25 15:33:17] 2025-10-25 13:32:48,805 | INFO     | [job] job monitor thread has finished
[2025-10-25 15:33:17] 2025-10-25 13:32:48,830 | INFO     | [payload] validate_pre thread has finished
[2025-10-25 15:33:17] 2025-10-25 13:32:49,082 | INFO     | [payload] execute_payloads thread has finished
[2025-10-25 15:33:17] 2025-10-25 13:32:49,169 | INFO     | [job] control thread has finished
[2025-10-25 15:33:17] 2025-10-25 13:32:49,392 | INFO     | [payload] failed_post thread has finished
[2025-10-25 15:33:17] 2025-10-25 13:32:49,396 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-25 15:33:17] 2025-10-25 13:32:49,617 | INFO     | [data] copytool_out thread has finished
[2025-10-25 15:33:17] 2025-10-25 13:32:50,145 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-25 15:33:17] 2025-10-25 13:32:52,817 | INFO     | [monitor] cgroup control has ended
[2025-10-25 15:33:17] 2025-10-25 13:32:54,152 | INFO     | [data] queue_monitor thread has finished
[2025-10-25 15:33:17] 2025-10-25 13:32:54,188 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140201226913600)>', '<ExcThread(monitor, started 140200743266048)>']
[2025-10-25 15:33:17] 2025-10-25 13:32:59,192 | INFO     | all workflow threads have been joined
[2025-10-25 15:33:17] 2025-10-25 13:32:59,192 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-25 15:33:17] 2025-10-25 13:32:59,192 | INFO     | traces error code: 0
[2025-10-25 15:33:17] 2025-10-25 13:32:59,192 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-25 15:33:17] 2025-10-25 13:33:17,102 | INFO     | PID=3451771 has CPU usage=0.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-25 15:33:17] 2025-10-25 13:33:17,102 | INFO     | found 0 job(s) in 20 queues
[2025-10-25 15:33:17] 2025-10-25 13:33:17,102 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-25 15:33:17] 2025-10-25 13:33:17,103 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-25 15:33:17] 2025-10-25 13:33:17,103 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-25 15:33:17] 2025-10-25 13:33:17,103 | CRITICAL | thread 'MainThread' is not alive
[2025-10-25 15:33:17] 2025-10-25 13:33:17,103 | INFO     | [monitor] control thread has ended
[2025-10-25 15:33:17] 2025-10-25 13:33:17,149 [wrapper] ==== pilot stdout END ====
[2025-10-25 15:33:17] 2025-10-25 13:33:17,151 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-25 15:33:17] 2025-10-25 13:33:17,154 [wrapper] pilotpid: 3451771
[2025-10-25 15:33:17] 2025-10-25 13:33:17,156 [wrapper] Pilot exit status: 0
[2025-10-25 15:33:17] 2025-10-25 13:33:17,163 [wrapper] pandaids: 6858037342
[2025-10-25 15:33:17] 2025-10-25 13:33:17,177 [wrapper] cleanup supervisor_pilot 3470443 3451772
[2025-10-25 15:33:17] 2025-10-25 13:33:17,180 [wrapper] Test setup, not cleaning
[2025-10-25 15:33:17] 2025-10-25 13:33:17,182 [wrapper] apfmon messages muted
[2025-10-25 15:33:17] 2025-10-25 13:33:17,184 [wrapper] ==== wrapper stdout END ====
[2025-10-25 15:33:17] 2025-10-25 13:33:17,186 [wrapper] ==== wrapper stderr END ====
[2025-10-25 15:33:17]  *** Error codes and diagnostics ***
[2025-10-25 15:33:17]     "exeErrorCode": 0,
[2025-10-25 15:33:17]     "exeErrorDiag": "",
[2025-10-25 15:33:17]     "pilotErrorCode": 0,
[2025-10-25 15:33:17]     "pilotErrorDiag": "",
[2025-10-25 15:33:17]  *** Listing of results directory ***
[2025-10-25 15:33:17] total 453932
[2025-10-25 15:33:17] -rw-r--r-- 1 boinc boinc    557409 Oct 24 19:39 pilot3.tar.gz
[2025-10-25 15:33:17] -rw-r--r-- 1 boinc boinc      5112 Oct 24 20:02 queuedata.json
[2025-10-25 15:33:17] -rwx------ 1 boinc boinc     36292 Oct 24 20:04 runpilot2-wrapper.sh
[2025-10-25 15:33:17] -rw-r--r-- 1 boinc boinc       100 Oct 25 14:05 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-25 15:33:17] -rwxr-xr-x 1 boinc boinc      7986 Oct 25 14:05 run_atlas
[2025-10-25 15:33:17] -rw-r--r-- 1 boinc boinc       105 Oct 25 14:05 job.xml
[2025-10-25 15:33:17] -rw-r--r-- 2 boinc boinc 273017594 Oct 25 14:05 EVNT.46965150._000035.pool.root.1
[2025-10-25 15:33:17] -rw-r--r-- 1 boinc boinc      6919 Oct 25 14:05 init_data.xml
[2025-10-25 15:33:17] drwxrwx--x 2 boinc boinc      4096 Oct 25 14:05 shared
[2025-10-25 15:33:17] -rw-r--r-- 2 boinc boinc    569678 Oct 25 14:05 input.tar.gz
[2025-10-25 15:33:17] -rw-r--r-- 2 boinc boinc     15120 Oct 25 14:05 start_atlas.sh
[2025-10-25 15:33:17] -rw-r--r-- 1 boinc boinc         0 Oct 25 14:05 boinc_lockfile
[2025-10-25 15:33:17] -rw-r--r-- 1 boinc boinc      2554 Oct 25 14:05 pandaJob.out
[2025-10-25 15:33:17] -rw------- 1 boinc boinc    978288 Oct 25 14:05 agis_schedconf.cvmfs.json
[2025-10-25 15:33:17] -rw------- 1 boinc boinc   1560772 Oct 25 14:05 agis_ddmendpoints.agis.ALL.json
[2025-10-25 15:33:17] drwx------ 5 boinc boinc      4096 Oct 25 14:05 pilot3
[2025-10-25 15:33:17] -rw------- 1 boinc boinc 185900985 Oct 25 15:32 HITS.46965159._000854.pool.root.1
[2025-10-25 15:33:17] -rw-r--r-- 1 boinc boinc       529 Oct 25 15:32 boinc_task_state.xml
[2025-10-25 15:33:17] -rw------- 1 boinc boinc      1021 Oct 25 15:32 memory_monitor_summary.json
[2025-10-25 15:33:17] -rw------- 1 boinc boinc    239861 Oct 25 15:32 log.46965159._000854.job.log.tgz.1
[2025-10-25 15:33:17] -rw------- 1 boinc boinc      7751 Oct 25 15:32 heartbeat.json
[2025-10-25 15:33:17] -rw-r--r-- 1 boinc boinc      8192 Oct 25 15:33 boinc_mmap_file
[2025-10-25 15:33:17] -rw-r--r-- 1 boinc boinc        27 Oct 25 15:33 wrapper_checkpoint.txt
[2025-10-25 15:33:17] -rw------- 1 boinc boinc       817 Oct 25 15:33 pilotlog.txt
[2025-10-25 15:33:17] -rw------- 1 boinc boinc        95 Oct 25 15:33 pilot_heartbeat.json
[2025-10-25 15:33:17] -rw------- 1 boinc boinc    763597 Oct 25 15:33 log.46965159._000854.job.log.1
[2025-10-25 15:33:17] -rw------- 1 boinc boinc       357 Oct 25 15:33 output.list
[2025-10-25 15:33:17] -rw-r--r-- 1 boinc boinc       620 Oct 25 15:33 runtime_log
[2025-10-25 15:33:17] -rw------- 1 boinc boinc   1024000 Oct 25 15:33 result.tar.gz
[2025-10-25 15:33:17] -rw------- 1 boinc boinc       659 Oct 25 15:33 xC3NDmYKbW8n9Rq4apOajLDm4fhM0noT9bVof3QYDmgmlMDmQZWcsn.diag
[2025-10-25 15:33:17] -rw-r--r-- 1 boinc boinc      8782 Oct 25 15:33 runtime_log.err
[2025-10-25 15:33:17] -rw-r--r-- 1 boinc boinc     21857 Oct 25 15:33 stderr.txt
[2025-10-25 15:33:17] HITS file was successfully produced:
[2025-10-25 15:33:17] -rw------- 1 boinc boinc 185900985 Oct 25 15:32 shared/HITS.pool.root.1
[2025-10-25 15:33:17]  *** Contents of shared directory: ***
[2025-10-25 15:33:17] total 449748
[2025-10-25 15:33:17] -rw-r--r-- 2 boinc boinc 273017594 Oct 25 14:05 ATLAS.root_0
[2025-10-25 15:33:17] -rw-r--r-- 2 boinc boinc    569678 Oct 25 14:05 input.tar.gz
[2025-10-25 15:33:17] -rw-r--r-- 2 boinc boinc     15120 Oct 25 14:05 start_atlas.sh
[2025-10-25 15:33:17] -rw------- 1 boinc boinc 185900985 Oct 25 15:32 HITS.pool.root.1
[2025-10-25 15:33:17] -rw------- 1 boinc boinc   1024000 Oct 25 15:33 result.tar.gz
15:33:18 (3448044): run_atlas exited; CPU time 15009.112679
15:33:18 (3448044): called boinc_finish(0)

</stderr_txt>
]]>

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