Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
11:09:06 (3577300): wrapper (7.7.26015): starting
11:09:06 (3577300): wrapper: running run_atlas (--nthreads 4)
[2025-10-25 11:09:06] Arguments: --nthreads 4
[2025-10-25 11:09:06] Threads: 4
[2025-10-25 11:09:06] Checking for CVMFS
[2025-10-25 11:09:06] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-25 11:09:06] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-25 11:09:06] Running cvmfs_config stat atlas.cern.ch
[2025-10-25 11:09:07] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-25 11:09:07] 2.9.2.0 1545554 6347 96612 152111 2 57 31254728 36864001 0 130560 0 5233331 99.990 237458 1028 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-10-25 11:09:07] CVMFS is ok
[2025-10-25 11:09:07] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-25 11:09:07] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-25 11:09:07] Further information can be found at the LHC@home message board.
[2025-10-25 11:09:07] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-25 11:09:07] Checking for apptainer binary...
[2025-10-25 11:09:07] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-25 11:09:07] Running /usr/bin/apptainer --version
[2025-10-25 11:09:07] apptainer version 1.4.1-1.1
[2025-10-25 11:09:07] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-25 11:09:07] thA309
[2025-10-25 11:09:07] apptainer works
[2025-10-25 11:09:07] Set ATHENA_PROC_NUMBER=4
[2025-10-25 11:09:07] Set ATHENA_CORE_NUMBER=4
[2025-10-25 11:09:07] Starting ATLAS job with PandaID=6855926005
[2025-10-25 11:09:07] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-25 12:27:27]  *** The last 200 lines of the pilot log: ***
[2025-10-25 12:27:27] 2025-10-25 10:26:32,764 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-25 12:27:27] 2025-10-25 10:26:33,420 | INFO     | all data control threads have been joined
[2025-10-25 12:27:27] 2025-10-25 10:26:33,631 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-25 12:27:27] 2025-10-25 10:26:33,631 | INFO     | aborting loop
[2025-10-25 12:27:27] 2025-10-25 10:26:33,712 | INFO     | all job control threads have been joined
[2025-10-25 12:27:27] 2025-10-25 10:26:33,769 | INFO     | [job] retrieve thread has finished
[2025-10-25 12:27:27] 2025-10-25 10:26:33,770 | INFO     | [job] queue monitor thread has finished
[2025-10-25 12:27:27] 2025-10-25 10:26:33,817 | INFO     | [payload] validate_pre thread has finished
[2025-10-25 12:27:27] 2025-10-25 10:26:33,849 | INFO     | [payload] failed_post thread has finished
[2025-10-25 12:27:27] 2025-10-25 10:26:33,878 | INFO     | all payload control threads have been joined
[2025-10-25 12:27:27] 2025-10-25 10:26:34,260 | INFO     | [payload] execute_payloads thread has finished
[2025-10-25 12:27:27] 2025-10-25 10:26:34,342 | INFO     | [data] copytool_in thread has finished
[2025-10-25 12:27:27] 2025-10-25 10:26:34,426 | INFO     | [data] control thread has finished
[2025-10-25 12:27:27] 2025-10-25 10:26:34,637 | INFO     | [job] job monitor thread has finished
[2025-10-25 12:27:27] 2025-10-25 10:26:34,718 | INFO     | [job] control thread has finished
[2025-10-25 12:27:27] 2025-10-25 10:26:34,770 | INFO     | [data] copytool_out thread has finished
[2025-10-25 12:27:27] 2025-10-25 10:26:34,884 | INFO     | [payload] control thread has finished
[2025-10-25 12:27:27] 2025-10-25 10:26:35,088 | INFO     | [job] validate thread has finished
[2025-10-25 12:27:27] 2025-10-25 10:26:35,103 | INFO     | [payload] validate_post thread has finished
[2025-10-25 12:27:27] 2025-10-25 10:26:35,241 | INFO     | [job] create_data_payload thread has finished
[2025-10-25 12:27:27] 2025-10-25 10:26:36,771 | INFO     | [data] queue_monitor thread has finished
[2025-10-25 12:27:27] 2025-10-25 10:26:43,707 | INFO     | job.realtimelogging is not enabled
[2025-10-25 12:27:27] 2025-10-25 10:26:44,713 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-25 12:27:27] 2025-10-25 10:27:03,744 | INFO     | PID=3581084 has CPU usage=2.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-25 12:27:27] 2025-10-25 10:27:03,744 | INFO     | found 0 job(s) in 20 queues
[2025-10-25 12:27:27] 2025-10-25 10:27:03,745 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-25 12:27:27] 2025-10-25 10:27:03,745 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-25 12:27:27] 2025-10-25 10:27:20,597 | INFO     | [monitor] cgroup control has ended
[2025-10-25 12:27:27] 2025-10-25 10:27:22,401 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139827158247232)>', '<ExcThread(monitor, started 139825990584064)>']
[2025-10-25 12:27:27] 2025-10-25 10:27:22,847 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-25 12:27:27] 2025-10-25 10:27:22,847 | INFO     | [monitor] control thread has ended
[2025-10-25 12:27:27] 2025-10-25 10:27:27,427 | INFO     | all workflow threads have been joined
[2025-10-25 12:27:27] 2025-10-25 10:27:27,427 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-25 12:27:27] 2025-10-25 10:27:27,428 | INFO     | traces error code: 0
[2025-10-25 12:27:27] 2025-10-25 10:27:27,428 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-25 12:27:27] 2025-10-25 10:27:27,512 [wrapper] ==== pilot stdout END ====
[2025-10-25 12:27:27] 2025-10-25 10:27:27,516 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-25 12:27:27] 2025-10-25 10:27:27,520 [wrapper] pilotpid: 3581084
[2025-10-25 12:27:27] 2025-10-25 10:27:27,525 [wrapper] Pilot exit status: 0
[2025-10-25 12:27:27] 2025-10-25 10:27:27,537 [wrapper] pandaids: 6855926005
[2025-10-25 12:27:27] 2025-10-25 10:27:27,562 [wrapper] cleanup supervisor_pilot 3600255 3581085
[2025-10-25 12:27:27] 2025-10-25 10:27:27,566 [wrapper] Test setup, not cleaning
[2025-10-25 12:27:27] 2025-10-25 10:27:27,570 [wrapper] apfmon messages muted
[2025-10-25 12:27:27] 2025-10-25 10:27:27,574 [wrapper] ==== wrapper stdout END ====
[2025-10-25 12:27:27] 2025-10-25 10:27:27,578 [wrapper] ==== wrapper stderr END ====
[2025-10-25 12:27:27]  *** Error codes and diagnostics ***
[2025-10-25 12:27:27]     "exeErrorCode": 0,
[2025-10-25 12:27:27]     "exeErrorDiag": "",
[2025-10-25 12:27:27]     "pilotErrorCode": 0,
[2025-10-25 12:27:27]     "pilotErrorDiag": "",
[2025-10-25 12:27:27]  *** Listing of results directory ***
[2025-10-25 12:27:27] total 423036
[2025-10-25 12:27:27] -rw-r--r-- 1 boinc boinc      5112 Oct 24 22:33 queuedata.json
[2025-10-25 12:27:27] -rwx------ 1 boinc boinc     36292 Oct 24 22:36 runpilot2-wrapper.sh
[2025-10-25 12:27:27] -rw-r--r-- 1 boinc boinc    557409 Oct 24 22:36 pilot3.tar.gz
[2025-10-25 12:27:27] -rw-r--r-- 1 boinc boinc       100 Oct 25 11:09 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-25 12:27:27] -rwxr-xr-x 1 boinc boinc      7986 Oct 25 11:09 run_atlas
[2025-10-25 12:27:27] -rw-r--r-- 1 boinc boinc       105 Oct 25 11:09 job.xml
[2025-10-25 12:27:27] -rw-r--r-- 2 boinc boinc 226503796 Oct 25 11:09 EVNT.46771634._004951.pool.root.1
[2025-10-25 12:27:27] -rw-r--r-- 2 boinc boinc    569685 Oct 25 11:09 input.tar.gz
[2025-10-25 12:27:27] -rw-r--r-- 2 boinc boinc     15120 Oct 25 11:09 start_atlas.sh
[2025-10-25 12:27:27] drwxrwx--x 2 boinc boinc      4096 Oct 25 11:09 shared
[2025-10-25 12:27:27] -rw-r--r-- 1 boinc boinc         0 Oct 25 11:09 boinc_setup_complete
[2025-10-25 12:27:27] -rw-r--r-- 1 boinc boinc      6377 Oct 25 11:09 init_data.xml
[2025-10-25 12:27:27] -rw-r--r-- 1 boinc boinc         0 Oct 25 11:09 boinc_lockfile
[2025-10-25 12:27:27] -rw-r--r-- 1 boinc boinc      2561 Oct 25 11:09 pandaJob.out
[2025-10-25 12:27:27] -rw------- 1 boinc boinc    978605 Oct 25 11:09 agis_schedconf.cvmfs.json
[2025-10-25 12:27:27] -rw------- 1 boinc boinc   1560772 Oct 25 11:09 agis_ddmendpoints.agis.ALL.json
[2025-10-25 12:27:27] drwx------ 5 boinc boinc      4096 Oct 25 11:09 pilot3
[2025-10-25 12:27:27] -rw------- 1 boinc boinc 200905552 Oct 25 12:26 HITS.46771637._124154.pool.root.1
[2025-10-25 12:27:27] -rw-r--r-- 1 boinc boinc       529 Oct 25 12:26 boinc_task_state.xml
[2025-10-25 12:27:27] -rw------- 1 boinc boinc      1024 Oct 25 12:26 memory_monitor_summary.json
[2025-10-25 12:27:27] -rw------- 1 boinc boinc    262960 Oct 25 12:26 log.46771637._124154.job.log.tgz.1
[2025-10-25 12:27:27] -rw------- 1 boinc boinc      7761 Oct 25 12:26 heartbeat.json
[2025-10-25 12:27:27] -rw------- 1 boinc boinc        95 Oct 25 12:27 pilot_heartbeat.json
[2025-10-25 12:27:27] -rw-r--r-- 1 boinc boinc        27 Oct 25 12:27 wrapper_checkpoint.txt
[2025-10-25 12:27:27] -rw-r--r-- 1 boinc boinc      8192 Oct 25 12:27 boinc_mmap_file
[2025-10-25 12:27:27] -rw------- 1 boinc boinc      4824 Oct 25 12:27 pilotlog.txt
[2025-10-25 12:27:27] -rw------- 1 boinc boinc    683483 Oct 25 12:27 log.46771637._124154.job.log.1
[2025-10-25 12:27:27] -rw------- 1 boinc boinc       357 Oct 25 12:27 output.list
[2025-10-25 12:27:27] -rw-r--r-- 1 boinc boinc       620 Oct 25 12:27 runtime_log
[2025-10-25 12:27:27] -rw------- 1 boinc boinc    962560 Oct 25 12:27 result.tar.gz
[2025-10-25 12:27:27] -rw-r--r-- 1 boinc boinc      8777 Oct 25 12:27 runtime_log.err
[2025-10-25 12:27:27] -rw------- 1 boinc boinc       658 Oct 25 12:27 IqUKDm5hdW8n9Rq4apOajLDm4fhM0noT9bVof3QYDmQ7lMDmMWpcJo.diag
[2025-10-25 12:27:27] -rw-r--r-- 1 boinc boinc      7027 Oct 25 12:27 stderr.txt
[2025-10-25 12:27:27] HITS file was successfully produced:
[2025-10-25 12:27:27] -rw------- 1 boinc boinc 200905552 Oct 25 12:26 shared/HITS.pool.root.1
[2025-10-25 12:27:27]  *** Contents of shared directory: ***
[2025-10-25 12:27:27] total 418920
[2025-10-25 12:27:27] -rw-r--r-- 2 boinc boinc 226503796 Oct 25 11:09 ATLAS.root_0
[2025-10-25 12:27:27] -rw-r--r-- 2 boinc boinc    569685 Oct 25 11:09 input.tar.gz
[2025-10-25 12:27:27] -rw-r--r-- 2 boinc boinc     15120 Oct 25 11:09 start_atlas.sh
[2025-10-25 12:27:27] -rw------- 1 boinc boinc 200905552 Oct 25 12:26 HITS.pool.root.1
[2025-10-25 12:27:27] -rw------- 1 boinc boinc    962560 Oct 25 12:27 result.tar.gz
12:27:29 (3577300): run_atlas exited; CPU time 17579.760545
12:27:29 (3577300): called boinc_finish(0)

</stderr_txt>
]]>

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