Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
10:52:01 (1784088): wrapper (7.7.26015): starting
10:52:01 (1784088): wrapper: running run_atlas (--nthreads 4)
[2025-10-25 10:52:01] Arguments: --nthreads 4
[2025-10-25 10:52:01] Threads: 4
[2025-10-25 10:52:01] Checking for CVMFS
[2025-10-25 10:52:02] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-25 10:52:02] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-25 10:52:02] Running cvmfs_config stat atlas.cern.ch
[2025-10-25 10:52:02] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-25 10:52:02] 2.9.2.0 3052 5431 98624 152111 0 57 32066551 36864000 0 130560 0 4624086 99.990 206517 885 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-10-25 10:52:02] CVMFS is ok
[2025-10-25 10:52:02] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-25 10:52:02] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-25 10:52:02] Further information can be found at the LHC@home message board.
[2025-10-25 10:52:02] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-25 10:52:02] Checking for apptainer binary...
[2025-10-25 10:52:02] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-25 10:52:02] Running /usr/bin/apptainer --version
[2025-10-25 10:52:02] apptainer version 1.4.1-1.1
[2025-10-25 10:52:02] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-25 10:52:02] thA334
[2025-10-25 10:52:02] apptainer works
[2025-10-25 10:52:02] Set ATHENA_PROC_NUMBER=4
[2025-10-25 10:52:02] Set ATHENA_CORE_NUMBER=4
[2025-10-25 10:52:02] Starting ATLAS job with PandaID=6858020195
[2025-10-25 10:52:02] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-25 12:07:27]  *** The last 200 lines of the pilot log: ***
[2025-10-25 12:07:27] 2025-10-25 10:06:55,370 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-25 12:07:27] 2025-10-25 10:06:55,370 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-25 12:07:27] 2025-10-25 10:06:55,371 | INFO     | job 6858020195 has completed (purged errors)
[2025-10-25 12:07:27] 2025-10-25 10:06:55,371 | INFO     | overall cleanup function is called
[2025-10-25 12:07:27] 2025-10-25 10:06:56,377 | INFO     | --- collectZombieJob: --- 10, [1794460]
[2025-10-25 12:07:27] 2025-10-25 10:06:56,377 | INFO     | zombie collector waiting for pid 1794460
[2025-10-25 12:07:27] 2025-10-25 10:06:56,378 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-25 12:07:27] 2025-10-25 10:06:56,378 | INFO     | collected zombie processes
[2025-10-25 12:07:27] 2025-10-25 10:06:56,378 | INFO     | will attempt to kill all subprocesses of pid=1794460
[2025-10-25 12:07:27] 2025-10-25 10:06:56,421 | INFO     | process IDs to be killed: [1794460] (in reverse order)
[2025-10-25 12:07:27] 2025-10-25 10:06:56,452 | WARNING  | found no corresponding commands to process id(s)
[2025-10-25 12:07:27] 2025-10-25 10:06:56,452 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-25 12:07:27] 2025-10-25 10:06:56,454 | INFO     | did not find any defunct processes belonging to 1794460
[2025-10-25 12:07:27] 2025-10-25 10:06:56,455 | INFO     | did not find any defunct processes belonging to 1794460
[2025-10-25 12:07:27] 2025-10-25 10:06:56,455 | INFO     | ready for new job
[2025-10-25 12:07:27] 2025-10-25 10:06:56,455 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-25 12:07:27] 2025-10-25 10:06:56,456 | INFO     | ***************************************
[2025-10-25 12:07:27] 2025-10-25 10:06:56,456 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-25 12:07:27] 2025-10-25 10:06:56,456 | INFO     | ***************************************
[2025-10-25 12:07:27] 2025-10-25 10:06:56,456 | INFO     | 
[2025-10-25 12:07:27] 2025-10-25 10:06:56,456 | INFO     | architecture information:
[2025-10-25 12:07:27] 2025-10-25 10:06:56,457 | INFO     | executing command: cat /etc/os-release
[2025-10-25 12:07:27] 2025-10-25 10:06:56,469 | INFO     | cat /etc/os-release:
[2025-10-25 12:07:27] NAME="CentOS Linux"
[2025-10-25 12:07:27] VERSION="7 (Core)"
[2025-10-25 12:07:27] ID="centos"
[2025-10-25 12:07:27] ID_LIKE="rhel fedora"
[2025-10-25 12:07:27] VERSION_ID="7"
[2025-10-25 12:07:27] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-25 12:07:27] ANSI_COLOR="0;31"
[2025-10-25 12:07:27] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-25 12:07:27] HOME_URL="https://www.centos.org/"
[2025-10-25 12:07:27] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-25 12:07:27] 
[2025-10-25 12:07:27] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-25 12:07:27] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-25 12:07:27] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-25 12:07:27] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-25 12:07:27] 
[2025-10-25 12:07:27] 2025-10-25 10:06:56,469 | INFO     | ***************************************
[2025-10-25 12:07:27] 2025-10-25 10:06:56,973 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-10-25 12:07:27] 2025-10-25 10:06:56,990 | INFO     | sufficient remaining disk space (226926526464 B)
[2025-10-25 12:07:27] 2025-10-25 10:06:56,990 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-25 12:07:27] 2025-10-25 10:06:56,990 | INFO     | current server update state: UPDATING_FINAL
[2025-10-25 12:07:27] 2025-10-25 10:06:56,990 | INFO     | update_server=False
[2025-10-25 12:07:27] 2025-10-25 10:06:56,990 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-25 12:07:27] 2025-10-25 10:06:56,990 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-25 12:07:27] 2025-10-25 10:06:57,613 | INFO     | all payload control threads have been joined
[2025-10-25 12:07:27] 2025-10-25 10:06:57,625 | INFO     | all data control threads have been joined
[2025-10-25 12:07:27] 2025-10-25 10:06:57,770 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-25 12:07:27] 2025-10-25 10:06:57,770 | INFO     | aborting loop
[2025-10-25 12:07:27] 2025-10-25 10:06:57,925 | INFO     | all job control threads have been joined
[2025-10-25 12:07:27] 2025-10-25 10:06:57,996 | INFO     | [job] retrieve thread has finished
[2025-10-25 12:07:27] 2025-10-25 10:06:58,001 | INFO     | [job] create_data_payload thread has finished
[2025-10-25 12:07:27] 2025-10-25 10:06:58,103 | INFO     | [payload] validate_pre thread has finished
[2025-10-25 12:07:27] 2025-10-25 10:06:58,143 | INFO     | [payload] execute_payloads thread has finished
[2025-10-25 12:07:27] 2025-10-25 10:06:58,363 | INFO     | [data] copytool_in thread has finished
[2025-10-25 12:07:27] 2025-10-25 10:06:58,391 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-25 12:07:27] 2025-10-25 10:06:58,619 | INFO     | [payload] control thread has finished
[2025-10-25 12:07:27] 2025-10-25 10:06:58,631 | INFO     | [data] control thread has finished
[2025-10-25 12:07:27] 2025-10-25 10:06:58,776 | INFO     | [job] job monitor thread has finished
[2025-10-25 12:07:27] 2025-10-25 10:06:58,931 | INFO     | [job] control thread has finished
[2025-10-25 12:07:27] 2025-10-25 10:06:58,988 | INFO     | [payload] validate_post thread has finished
[2025-10-25 12:07:27] 2025-10-25 10:06:58,996 | INFO     | [data] copytool_out thread has finished
[2025-10-25 12:07:27] 2025-10-25 10:06:59,331 | INFO     | [payload] failed_post thread has finished
[2025-10-25 12:07:27] 2025-10-25 10:06:59,396 | INFO     | [job] validate thread has finished
[2025-10-25 12:07:27] 2025-10-25 10:06:59,881 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-25 12:07:27] 2025-10-25 10:07:00,887 | INFO     | [job] queue monitor thread has finished
[2025-10-25 12:07:27] 2025-10-25 10:07:02,398 | INFO     | [data] queue_monitor thread has finished
[2025-10-25 12:07:27] 2025-10-25 10:07:07,385 | INFO     | job.realtimelogging is not enabled
[2025-10-25 12:07:27] 2025-10-25 10:07:08,194 [wrapper] supervise_pilot (15 min periods counter: 6)
[2025-10-25 12:07:27] 2025-10-25 10:07:08,391 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-25 12:07:27] 2025-10-25 10:07:14,739 | INFO     | [monitor] cgroup control has ended
[2025-10-25 12:07:27] 2025-10-25 10:07:15,338 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140275295680320)>', '<ExcThread(monitor, started 140274261010176)>']
[2025-10-25 12:07:27] 2025-10-25 10:07:20,364 | INFO     | all workflow threads have been joined
[2025-10-25 12:07:27] 2025-10-25 10:07:20,364 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-25 12:07:27] 2025-10-25 10:07:20,364 | INFO     | traces error code: 0
[2025-10-25 12:07:27] 2025-10-25 10:07:20,364 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-25 12:07:27] 2025-10-25 10:07:27,111 | INFO     | PID=1787879 has CPU usage=1.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-25 12:07:27] 2025-10-25 10:07:27,111 | INFO     | found 0 job(s) in 20 queues
[2025-10-25 12:07:27] 2025-10-25 10:07:27,112 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-25 12:07:27] 2025-10-25 10:07:27,112 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-25 12:07:27] 2025-10-25 10:07:27,112 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-25 12:07:27] 2025-10-25 10:07:27,112 | INFO     | [monitor] control thread has ended
[2025-10-25 12:07:27] 2025-10-25 10:07:27,175 [wrapper] ==== pilot stdout END ====
[2025-10-25 12:07:27] 2025-10-25 10:07:27,179 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-25 12:07:27] 2025-10-25 10:07:27,183 [wrapper] pilotpid: 1787879
[2025-10-25 12:07:27] 2025-10-25 10:07:27,187 [wrapper] Pilot exit status: 0
[2025-10-25 12:07:27] 2025-10-25 10:07:27,198 [wrapper] pandaids: 6858020195
[2025-10-25 12:07:27] 2025-10-25 10:07:27,218 [wrapper] cleanup supervisor_pilot 1809010 1787880
[2025-10-25 12:07:27] 2025-10-25 10:07:27,222 [wrapper] Test setup, not cleaning
[2025-10-25 12:07:27] 2025-10-25 10:07:27,225 [wrapper] apfmon messages muted
[2025-10-25 12:07:27] 2025-10-25 10:07:27,229 [wrapper] ==== wrapper stdout END ====
[2025-10-25 12:07:27] 2025-10-25 10:07:27,232 [wrapper] ==== wrapper stderr END ====
[2025-10-25 12:07:27]  *** Error codes and diagnostics ***
[2025-10-25 12:07:27]     "exeErrorCode": 0,
[2025-10-25 12:07:27]     "exeErrorDiag": "",
[2025-10-25 12:07:27]     "pilotErrorCode": 0,
[2025-10-25 12:07:27]     "pilotErrorDiag": "",
[2025-10-25 12:07:27]  *** Listing of results directory ***
[2025-10-25 12:07:27] total 454512
[2025-10-25 12:07:27] -rw-r--r-- 1 boinc boinc      5112 Oct 24 19:39 queuedata.json
[2025-10-25 12:07:27] -rw-r--r-- 1 boinc boinc    557409 Oct 24 19:39 pilot3.tar.gz
[2025-10-25 12:07:27] -rwx------ 1 boinc boinc     36292 Oct 24 19:40 runpilot2-wrapper.sh
[2025-10-25 12:07:27] -rw-r--r-- 1 boinc boinc       100 Oct 25 10:52 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-25 12:07:27] -rwxr-xr-x 1 boinc boinc      7986 Oct 25 10:52 run_atlas
[2025-10-25 12:07:27] -rw-r--r-- 1 boinc boinc       105 Oct 25 10:52 job.xml
[2025-10-25 12:07:27] -rw-r--r-- 2 boinc boinc 272462825 Oct 25 10:52 EVNT.46965150._000023.pool.root.1
[2025-10-25 12:07:27] -rw-r--r-- 2 boinc boinc    569680 Oct 25 10:52 input.tar.gz
[2025-10-25 12:07:27] -rw-r--r-- 2 boinc boinc     15120 Oct 25 10:52 start_atlas.sh
[2025-10-25 12:07:27] drwxrwx--x 2 boinc boinc      4096 Oct 25 10:52 shared
[2025-10-25 12:07:27] -rw-r--r-- 1 boinc boinc         0 Oct 25 10:52 boinc_setup_complete
[2025-10-25 12:07:27] -rw-r--r-- 1 boinc boinc      6368 Oct 25 10:52 init_data.xml
[2025-10-25 12:07:27] -rw-r--r-- 1 boinc boinc         0 Oct 25 10:52 boinc_lockfile
[2025-10-25 12:07:27] -rw-r--r-- 1 boinc boinc      2556 Oct 25 10:52 pandaJob.out
[2025-10-25 12:07:27] -rw------- 1 boinc boinc    978605 Oct 25 10:52 agis_schedconf.cvmfs.json
[2025-10-25 12:07:27] -rw------- 1 boinc boinc   1560772 Oct 25 10:52 agis_ddmendpoints.agis.ALL.json
[2025-10-25 12:07:27] drwx------ 5 boinc boinc      4096 Oct 25 10:52 pilot3
[2025-10-25 12:07:27] -rw------- 1 boinc boinc 187242358 Oct 25 12:06 HITS.46965159._000557.pool.root.1
[2025-10-25 12:07:27] -rw------- 1 boinc boinc        95 Oct 25 12:06 pilot_heartbeat.json
[2025-10-25 12:07:27] -rw-r--r-- 1 boinc boinc       530 Oct 25 12:06 boinc_task_state.xml
[2025-10-25 12:07:27] -rw------- 1 boinc boinc      1019 Oct 25 12:06 memory_monitor_summary.json
[2025-10-25 12:07:27] -rw------- 1 boinc boinc    249300 Oct 25 12:06 log.46965159._000557.job.log.tgz.1
[2025-10-25 12:07:27] -rw------- 1 boinc boinc      7766 Oct 25 12:06 heartbeat.json
[2025-10-25 12:07:27] -rw-r--r-- 1 boinc boinc      8192 Oct 25 12:07 boinc_mmap_file
[2025-10-25 12:07:27] -rw-r--r-- 1 boinc boinc        27 Oct 25 12:07 wrapper_checkpoint.txt
[2025-10-25 12:07:27] -rw------- 1 boinc boinc       747 Oct 25 12:07 pilotlog.txt
[2025-10-25 12:07:27] -rw------- 1 boinc boinc    663107 Oct 25 12:07 log.46965159._000557.job.log.1
[2025-10-25 12:07:27] -rw------- 1 boinc boinc       357 Oct 25 12:07 output.list
[2025-10-25 12:07:27] -rw-r--r-- 1 boinc boinc       620 Oct 25 12:07 runtime_log
[2025-10-25 12:07:27] -rw------- 1 boinc boinc    931840 Oct 25 12:07 result.tar.gz
[2025-10-25 12:07:27] -rw-r--r-- 1 boinc boinc      8777 Oct 25 12:07 runtime_log.err
[2025-10-25 12:07:27] -rw------- 1 boinc boinc       658 Oct 25 12:07 R8KNDmvwaW8n9Rq4apOajLDm4fhM0noT9bVof3QYDmHklMDmctjDcn.diag
[2025-10-25 12:07:27] -rw-r--r-- 1 boinc boinc     11206 Oct 25 12:07 stderr.txt
[2025-10-25 12:07:27] HITS file was successfully produced:
[2025-10-25 12:07:27] -rw------- 1 boinc boinc 187242358 Oct 25 12:06 shared/HITS.pool.root.1
[2025-10-25 12:07:27]  *** Contents of shared directory: ***
[2025-10-25 12:07:27] total 450432
[2025-10-25 12:07:27] -rw-r--r-- 2 boinc boinc 272462825 Oct 25 10:52 ATLAS.root_0
[2025-10-25 12:07:27] -rw-r--r-- 2 boinc boinc    569680 Oct 25 10:52 input.tar.gz
[2025-10-25 12:07:27] -rw-r--r-- 2 boinc boinc     15120 Oct 25 10:52 start_atlas.sh
[2025-10-25 12:07:27] -rw------- 1 boinc boinc 187242358 Oct 25 12:06 HITS.pool.root.1
[2025-10-25 12:07:27] -rw------- 1 boinc boinc    931840 Oct 25 12:07 result.tar.gz
12:07:28 (1784088): run_atlas exited; CPU time 16928.076852
12:07:28 (1784088): called boinc_finish(0)

</stderr_txt>
]]>

©2025 CERN