Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
12:06:04 (16457): wrapper (7.7.26015): starting
12:06:04 (16457): wrapper: running run_atlas (--nthreads 8)
[2025-10-25 12:06:04] Arguments: --nthreads 8
[2025-10-25 12:06:04] Threads: 8
[2025-10-25 12:06:04] Checking for CVMFS
[2025-10-25 12:06:05] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-25 12:06:06] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-25 12:06:06] Running cvmfs_config stat atlas.cern.ch
[2025-10-25 12:06:07] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-25 12:06:07] 2.11.2.0 20954 239128 144204 152113 3 61 17832764 25165825 4632 130560 0 113653915 99.887 66492847 3215 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-10-25 12:06:07] CVMFS is ok
[2025-10-25 12:06:07] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-25 12:06:07] Checking for apptainer binary...
[2025-10-25 12:06:07] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-25 12:06:07] Running /usr/bin/apptainer --version
[2025-10-25 12:06:07] apptainer version 1.3.2-1.el7
[2025-10-25 12:06:07] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-25 12:06:23] cg-vwn319.simple-grid.lan
[2025-10-25 12:06:23] apptainer works
[2025-10-25 12:06:23] Set ATHENA_PROC_NUMBER=8
[2025-10-25 12:06:23] Set ATHENA_CORE_NUMBER=8
[2025-10-25 12:06:23] Starting ATLAS job with PandaID=6855849841
[2025-10-25 12:06:23] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/14 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-25 16:55:38]  *** The last 200 lines of the pilot log: ***
[2025-10-25 16:55:38] 2025-10-25 14:54:57,085 | INFO     | mean y: 2498115.364661654
[2025-10-25 16:55:38] 2025-10-25 14:54:57,085 | INFO     | -- intersect: -14919455334.597792
[2025-10-25 16:55:38] 2025-10-25 14:54:57,085 | INFO     | intersect: -14919455334.597792
[2025-10-25 16:55:38] 2025-10-25 14:54:57,085 | INFO     | chi2: 4.710990200493438
[2025-10-25 16:55:38] 2025-10-25 14:54:57,086 | INFO     | current chi2=4.710990200493438 (change=13.444055896677334 %)
[2025-10-25 16:55:38] 2025-10-25 14:54:57,086 | INFO     | right removable region: 265
[2025-10-25 16:55:38] 2025-10-25 14:54:57,086 | INFO     | sum of square deviations: 5836025702.5
[2025-10-25 16:55:38] 2025-10-25 14:54:57,088 | INFO     | sum of deviations: -56560515038.00001
[2025-10-25 16:55:38] 2025-10-25 14:54:57,089 | INFO     | mean x: 1761395869.5
[2025-10-25 16:55:38] 2025-10-25 14:54:57,089 | INFO     | mean y: 2530470.3759398498
[2025-10-25 16:55:38] 2025-10-25 14:54:57,089 | INFO     | -- intersect: 17073301341.389912
[2025-10-25 16:55:38] 2025-10-25 14:54:57,089 | INFO     | intersect: 17073301341.389912
[2025-10-25 16:55:38] 2025-10-25 14:54:57,089 | INFO     | chi2: 1.3772317433584802
[2025-10-25 16:55:38] 2025-10-25 14:54:57,090 | INFO     | current chi2=1.3772317433584802 (change=74.69585188630359 %)
[2025-10-25 16:55:38] 2025-10-25 14:54:57,090 | INFO     | sum of square deviations: 5513070810.0
[2025-10-25 16:55:38] 2025-10-25 14:54:57,110 | INFO     | sum of deviations: -75969808517.00002
[2025-10-25 16:55:38] 2025-10-25 14:54:57,111 | INFO     | mean x: 1761396022.0
[2025-10-25 16:55:38] 2025-10-25 14:54:57,111 | INFO     | mean y: 2539559.0383141763
[2025-10-25 16:55:38] 2025-10-25 14:54:57,111 | INFO     | -- intersect: 24274478579.1623
[2025-10-25 16:55:38] 2025-10-25 14:54:57,111 | INFO     | intersect: 24274478579.1623
[2025-10-25 16:55:38] 2025-10-25 14:54:57,112 | INFO     | chi2: 1.0182015407463527
[2025-10-25 16:55:38] 2025-10-25 14:54:57,112 | INFO     | current chi2=1.0182015407463527 (change=26.068975271845396 %)
[2025-10-25 16:55:38] 2025-10-25 14:54:57,112 | INFO     | sum of square deviations: 5202255680.0
[2025-10-25 16:55:38] 2025-10-25 14:54:57,114 | INFO     | sum of deviations: -71397822527.0
[2025-10-25 16:55:38] 2025-10-25 14:54:57,115 | INFO     | mean x: 1761396174.5
[2025-10-25 16:55:38] 2025-10-25 14:54:57,115 | INFO     | mean y: 2537296.28125
[2025-10-25 16:55:38] 2025-10-25 14:54:57,115 | INFO     | -- intersect: 24176637763.92449
[2025-10-25 16:55:38] 2025-10-25 14:54:57,115 | INFO     | intersect: 24176637763.92449
[2025-10-25 16:55:38] 2025-10-25 14:54:57,115 | INFO     | chi2: 1.0080064278108631
[2025-10-25 16:55:38] 2025-10-25 14:54:57,115 | INFO     | current chi2=1.0080064278108631 (change=1.001286339442823 %)
[2025-10-25 16:55:38] 2025-10-25 14:54:57,115 | INFO     | left removable region: 30
[2025-10-25 16:55:38] 2025-10-25 14:54:57,116 | INFO     | sum of square deviations: 4024149870.0
[2025-10-25 16:55:38] 2025-10-25 14:54:57,118 | INFO     | sum of deviations: -27579989536.0
[2025-10-25 16:55:38] 2025-10-25 14:54:57,118 | INFO     | mean x: 1761396449.0
[2025-10-25 16:55:38] 2025-10-25 14:54:57,118 | INFO     | mean y: 2532537.5659574466
[2025-10-25 16:55:38] 2025-10-25 14:54:57,118 | INFO     | -- intersect: 12074472500.420164
[2025-10-25 16:55:38] 2025-10-25 14:54:57,118 | INFO     | intersect: 12074472500.420164
[2025-10-25 16:55:38] 2025-10-25 14:54:57,119 | INFO     | chi2: 0.16513841733977985
[2025-10-25 16:55:38] 2025-10-25 14:54:57,119 | INFO     | -- intersect: 12074472500.420164
[2025-10-25 16:55:38] 2025-10-25 14:54:57,119 | INFO     | current memory leak: -6.85 B/s (using 235 data points, chi2=0.17)
[2025-10-25 16:55:38] 2025-10-25 14:54:57,120 | INFO     | could have reported an average CPU frequency of 1999 MHz (12 samples)
[2025-10-25 16:55:38] 2025-10-25 14:54:57,120 | INFO     | ..............................
[2025-10-25 16:55:38] 2025-10-25 14:54:57,120 | INFO     | . Timing measurements:
[2025-10-25 16:55:38] 2025-10-25 14:54:57,120 | INFO     | . get job = 0 s
[2025-10-25 16:55:38] 2025-10-25 14:54:57,120 | INFO     | . initial setup = 9 s
[2025-10-25 16:55:38] 2025-10-25 14:54:57,121 | INFO     | . payload setup = 138 s
[2025-10-25 16:55:38] 2025-10-25 14:54:57,121 | INFO     | . stage-in = 0 s
[2025-10-25 16:55:38] 2025-10-25 14:54:57,121 | INFO     | . payload execution = 16673 s
[2025-10-25 16:55:38] 2025-10-25 14:54:57,121 | INFO     | . stage-out = 3 s
[2025-10-25 16:55:38] 2025-10-25 14:54:57,121 | INFO     | . log creation = 0 s
[2025-10-25 16:55:38] 2025-10-25 14:54:57,121 | INFO     | ..............................
[2025-10-25 16:55:38] 2025-10-25 14:54:57,243 | INFO     | 
[2025-10-25 16:55:38] 2025-10-25 14:54:57,243 | INFO     | job summary report
[2025-10-25 16:55:38] 2025-10-25 14:54:57,243 | INFO     | --------------------------------------------------
[2025-10-25 16:55:38] 2025-10-25 14:54:57,244 | INFO     | PanDA job id: 6855849841
[2025-10-25 16:55:38] 2025-10-25 14:54:57,244 | INFO     | task id: 46771637
[2025-10-25 16:55:38] 2025-10-25 14:54:57,244 | INFO     | errors: (none)
[2025-10-25 16:55:38] 2025-10-25 14:54:57,244 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-25 16:55:38] 2025-10-25 14:54:57,244 | INFO     | pilot state: finished 
[2025-10-25 16:55:38] 2025-10-25 14:54:57,244 | INFO     | transexitcode: 0
[2025-10-25 16:55:38] 2025-10-25 14:54:57,244 | INFO     | exeerrorcode: 0
[2025-10-25 16:55:38] 2025-10-25 14:54:57,244 | INFO     | exeerrordiag: 
[2025-10-25 16:55:38] 2025-10-25 14:54:57,244 | INFO     | exitcode: 0
[2025-10-25 16:55:38] 2025-10-25 14:54:57,244 | INFO     | exitmsg: OK
[2025-10-25 16:55:38] 2025-10-25 14:54:57,245 | INFO     | cpuconsumptiontime: 63248 s
[2025-10-25 16:55:38] 2025-10-25 14:54:57,245 | INFO     | nevents: 400
[2025-10-25 16:55:38] 2025-10-25 14:54:57,245 | INFO     | neventsw: 0
[2025-10-25 16:55:38] 2025-10-25 14:54:57,245 | INFO     | pid: 26788
[2025-10-25 16:55:38] 2025-10-25 14:54:57,245 | INFO     | pgrp: 26788
[2025-10-25 16:55:38] 2025-10-25 14:54:57,245 | INFO     | corecount: 8
[2025-10-25 16:55:38] 2025-10-25 14:54:57,245 | INFO     | event service: False
[2025-10-25 16:55:38] 2025-10-25 14:54:57,245 | INFO     | sizes: {0: 2348709, 1: 2348964, 2: 2348964, 12: 2348992, 23: 2349020, 34: 2349048, 44: 2349204, 55: 2349232, 66: 2349260, 77: 2349288, 86: 2349606, 87: 2349914, 16
[2025-10-25 16:55:38] 2025-10-25 14:54:57,245 | INFO     | --------------------------------------------------
[2025-10-25 16:55:38] 2025-10-25 14:54:57,245 | INFO     | 
[2025-10-25 16:55:38] 2025-10-25 14:54:57,246 | INFO     | executing command: ls -lF /var/lib/boinc/slots/14
[2025-10-25 16:55:38] 2025-10-25 14:54:57,374 | INFO     | sufficient remaining disk space (496235446272 B)
[2025-10-25 16:55:38] 2025-10-25 14:54:57,374 | INFO     | work directory size check will use 2537553920 B as a max limit (10% grace limit added)
[2025-10-25 16:55:38] 2025-10-25 14:54:57,375 | INFO     | size of work directory /var/lib/boinc/slots/14/PanDA_Pilot-6855849841: 4153074 B (within 2537553920 B limit)
[2025-10-25 16:55:38] 2025-10-25 14:54:57,375 | INFO     | pfn file=/var/lib/boinc/slots/14/PanDA_Pilot-6855849841/HITS.46771637._122389.pool.root.1 does not exist (skip from workdir size calculation)
[2025-10-25 16:55:38] 2025-10-25 14:54:57,375 | INFO     | total size of present files: 0 B (workdir size: 4153074 B)
[2025-10-25 16:55:38] 2025-10-25 14:54:57,376 | INFO     | output file size check: skipping output file /var/lib/boinc/slots/14/PanDA_Pilot-6855849841/HITS.46771637._122389.pool.root.1 since it does not exist
[2025-10-25 16:55:38] 2025-10-25 14:54:57,493 | INFO     | number of running child processes to parent process 26788: 1
[2025-10-25 16:55:38] 2025-10-25 14:54:57,493 | INFO     | maximum number of monitored processes: 8
[2025-10-25 16:55:38] 2025-10-25 14:54:57,494 | INFO     | aborting job monitoring since job object (job id=6855849841) has expired
[2025-10-25 16:55:38] 2025-10-25 14:54:57,739 | INFO     | time since job start (17097s) is within the limit (172800.0s)
[2025-10-25 16:55:38] 2025-10-25 14:54:57,819 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-25 16:55:38] 2025-10-25 14:54:57,820 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-25 16:55:38] 2025-10-25 14:54:57,820 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-25 16:55:38] 2025-10-25 14:54:57,820 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-25 16:55:38] 2025-10-25 14:54:57,820 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-25 16:55:38] 2025-10-25 14:54:57,820 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-25 16:55:38] 2025-10-25 14:54:57,820 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-25 16:55:38] 2025-10-25 14:54:57,820 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-25 16:55:38] 2025-10-25 14:54:57,820 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-25 16:55:38] 2025-10-25 14:54:57,820 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-25 16:55:38] 2025-10-25 14:54:57,820 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-25 16:55:38] 2025-10-25 14:54:57,821 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-25 16:55:38] 2025-10-25 14:54:57,821 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-25 16:55:38] 2025-10-25 14:54:57,821 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-25 16:55:38] 2025-10-25 14:54:57,821 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-25 16:55:38] 2025-10-25 14:54:57,821 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-25 16:55:38] 2025-10-25 14:54:57,821 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-25 16:55:38] 2025-10-25 14:54:57,821 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-25 16:55:38] 2025-10-25 14:54:57,821 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-25 16:55:38] 2025-10-25 14:54:57,821 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-25 16:55:38] 2025-10-25 14:54:57,821 | INFO     | job 6855849841 has completed (purged errors)
[2025-10-25 16:55:38] 2025-10-25 14:54:57,822 | INFO     | overall cleanup function is called
[2025-10-25 16:55:38] 2025-10-25 14:54:58,844 | INFO     | --- collectZombieJob: --- 10, [26788]
[2025-10-25 16:55:38] 2025-10-25 14:54:58,844 | INFO     | zombie collector waiting for pid 26788
[2025-10-25 16:55:38] 2025-10-25 14:54:58,844 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-25 16:55:38] 2025-10-25 14:54:58,844 | INFO     | collected zombie processes
[2025-10-25 16:55:38] 2025-10-25 14:54:58,845 | INFO     | will attempt to kill all subprocesses of pid=26788
[2025-10-25 16:55:38] 2025-10-25 14:54:58,956 | INFO     | PID=20243 has CPU usage=2.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-10-25 16:55:38] 2025-10-25 14:54:58,956 | INFO     | .. there are 9 such processes running
[2025-10-25 16:55:38] 2025-10-25 14:54:59,050 | INFO     | process IDs to be killed: [26788] (in reverse order)
[2025-10-25 16:55:38] 2025-10-25 14:55:00,109 | WARNING  | found no corresponding commands to process id(s)
[2025-10-25 16:55:38] 2025-10-25 14:55:00,109 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-25 16:55:38] 2025-10-25 14:55:00,113 | INFO     | did not find any defunct processes belonging to 26788
[2025-10-25 16:55:38] 2025-10-25 14:55:00,116 | INFO     | did not find any defunct processes belonging to 26788
[2025-10-25 16:55:38] 2025-10-25 14:55:00,117 | INFO     | ready for new job
[2025-10-25 16:55:38] 2025-10-25 14:55:00,117 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-25 16:55:38] 2025-10-25 14:55:00,119 | INFO     | ***************************************
[2025-10-25 16:55:38] 2025-10-25 14:55:00,119 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-25 16:55:38] 2025-10-25 14:55:00,119 | INFO     | ***************************************
[2025-10-25 16:55:38] 2025-10-25 14:55:00,119 | INFO     | 
[2025-10-25 16:55:38] 2025-10-25 14:55:00,120 | INFO     | pilot is running in a VM
[2025-10-25 16:55:38] 2025-10-25 14:55:00,120 | INFO     | architecture information:
[2025-10-25 16:55:38] 2025-10-25 14:55:00,128 | INFO     | executing command: cat /etc/os-release
[2025-10-25 16:55:38] 2025-10-25 14:55:00,447 | INFO     | cat /etc/os-release:
[2025-10-25 16:55:38] NAME="CentOS Linux"
[2025-10-25 16:55:38] VERSION="7 (Core)"
[2025-10-25 16:55:38] ID="centos"
[2025-10-25 16:55:38] ID_LIKE="rhel fedora"
[2025-10-25 16:55:38] VERSION_ID="7"
[2025-10-25 16:55:38] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-25 16:55:38] ANSI_COLOR="0;31"
[2025-10-25 16:55:38] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-25 16:55:38] HOME_URL="https://www.centos.org/"
[2025-10-25 16:55:38] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-25 16:55:38] 
[2025-10-25 16:55:38] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-25 16:55:38] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-25 16:55:38] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-25 16:55:38] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-25 16:55:38] 
[2025-10-25 16:55:38] 2025-10-25 14:55:00,448 | INFO     | ***************************************
[2025-10-25 16:55:38] 2025-10-25 14:55:00,950 | INFO     | executing command: df -mP /var/lib/boinc/slots/14
[2025-10-25 16:55:38] 2025-10-25 14:55:01,187 | INFO     | sufficient remaining disk space (496242786304 B)
[2025-10-25 16:55:38] 2025-10-25 14:55:01,187 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-25 16:55:38] 2025-10-25 14:55:01,188 | INFO     | current server update state: UPDATING_FINAL
[2025-10-25 16:55:38] 2025-10-25 14:55:01,188 | INFO     | update_server=False
[2025-10-25 16:55:38] 2025-10-25 14:55:01,188 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-25 16:55:38] 2025-10-25 14:55:01,188 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-25 16:55:38] 2025-10-25 14:55:01,188 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-25 16:55:38] 2025-10-25 14:55:01,188 | INFO     | aborting loop
[2025-10-25 16:55:38] 2025-10-25 14:55:01,648 | INFO     | all data control threads have been joined
[2025-10-25 16:55:38] 2025-10-25 14:55:01,793 | INFO     | all payload control threads have been joined
[2025-10-25 16:55:38] 2025-10-25 14:55:01,797 | INFO     | all job control threads have been joined
[2025-10-25 16:55:38] 2025-10-25 14:55:02,194 | INFO     | [job] retrieve thread has finished
[2025-10-25 16:55:38] 2025-10-25 14:55:02,195 | INFO     | [job] job monitor thread has finished
[2025-10-25 16:55:38] 2025-10-25 14:55:02,200 | INFO     | [job] create_data_payload thread has finished
[2025-10-25 16:55:38] 2025-10-25 14:55:02,261 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-25 16:55:38] 2025-10-25 14:55:02,431 | INFO     | [payload] validate_post thread has finished
[2025-10-25 16:55:38] 2025-10-25 14:55:02,654 | INFO     | [data] control thread has finished
[2025-10-25 16:55:38] 2025-10-25 14:55:02,799 | INFO     | [payload] control thread has finished
[2025-10-25 16:55:38] 2025-10-25 14:55:02,804 | INFO     | [job] control thread has finished
[2025-10-25 16:55:38] 2025-10-25 14:55:02,934 | INFO     | [data] copytool_in thread has finished
[2025-10-25 16:55:38] 2025-10-25 14:55:02,947 | INFO     | [payload] validate_pre thread has finished
[2025-10-25 16:55:38] 2025-10-25 14:55:02,952 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-25 16:55:38] 2025-10-25 14:55:03,070 | INFO     | [payload] failed_post thread has finished
[2025-10-25 16:55:38] 2025-10-25 14:55:03,122 | INFO     | [payload] execute_payloads thread has finished
[2025-10-25 16:55:38] 2025-10-25 14:55:03,191 | INFO     | [job] validate thread has finished
[2025-10-25 16:55:38] 2025-10-25 14:55:03,199 | INFO     | [data] copytool_out thread has finished
[2025-10-25 16:55:38] 2025-10-25 14:55:03,267 | INFO     | [job] queue monitor thread has finished
[2025-10-25 16:55:38] 2025-10-25 14:55:06,961 | INFO     | [data] queue_monitor thread has finished
[2025-10-25 16:55:38] 2025-10-25 14:55:11,734 | INFO     | job.realtimelogging is not enabled
[2025-10-25 16:55:38] 2025-10-25 14:55:12,740 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-25 16:55:38] 2025-10-25 14:55:28,905 | INFO     | [monitor] cgroup control has ended
[2025-10-25 16:55:38] 2025-10-25 14:55:30,479 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140397347895104)>', '<ExcThread(monitor, started 140396768257792)>']
[2025-10-25 16:55:38] 2025-10-25 14:55:31,101 | INFO     | PID=20243 has CPU usage=1.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-10-25 16:55:38] 2025-10-25 14:55:31,102 | INFO     | .. there are 9 such processes running
[2025-10-25 16:55:38] 2025-10-25 14:55:31,102 | INFO     | found 0 job(s) in 20 queues
[2025-10-25 16:55:38] 2025-10-25 14:55:31,102 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-25 16:55:38] 2025-10-25 14:55:31,102 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-25 16:55:38] 2025-10-25 14:55:31,102 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-25 16:55:38] 2025-10-25 14:55:31,102 | INFO     | [monitor] control thread has ended
[2025-10-25 16:55:38] 2025-10-25 14:55:35,505 | INFO     | all workflow threads have been joined
[2025-10-25 16:55:38] 2025-10-25 14:55:35,505 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-25 16:55:38] 2025-10-25 14:55:35,506 | INFO     | traces error code: 0
[2025-10-25 16:55:38] 2025-10-25 14:55:35,506 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-25 16:55:38] 2025-10-25 14:55:35,851 [wrapper] ==== pilot stdout END ====
[2025-10-25 16:55:38] 2025-10-25 14:55:35,903 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-25 16:55:38] 2025-10-25 14:55:36,008 [wrapper] pilotpid: 20243
[2025-10-25 16:55:38] 2025-10-25 14:55:36,110 [wrapper] Pilot exit status: 0
[2025-10-25 16:55:38] 2025-10-25 14:55:36,589 [wrapper] pandaids: 6855849841
[2025-10-25 16:55:38] 2025-10-25 14:55:37,365 [wrapper] cleanup supervisor_pilot 26503 20244
[2025-10-25 16:55:38] 2025-10-25 14:55:37,440 [wrapper] Test setup, not cleaning
[2025-10-25 16:55:38] 2025-10-25 14:55:37,576 [wrapper] apfmon messages muted
[2025-10-25 16:55:38] 2025-10-25 14:55:37,681 [wrapper] ==== wrapper stdout END ====
[2025-10-25 16:55:38] 2025-10-25 14:55:37,748 [wrapper] ==== wrapper stderr END ====
[2025-10-25 16:55:38]  *** Error codes and diagnostics ***
[2025-10-25 16:55:38]     "exeErrorCode": 0,
[2025-10-25 16:55:38]     "exeErrorDiag": "",
[2025-10-25 16:55:38]     "pilotErrorCode": 0,
[2025-10-25 16:55:38]     "pilotErrorDiag": "",
[2025-10-25 16:55:38]  *** Listing of results directory ***
[2025-10-25 16:55:38] total 440796
[2025-10-25 16:55:38] -rw-r--r--. 1 boinc boinc    557409 Oct 24 18:34 pilot3.tar.gz
[2025-10-25 16:55:38] -rw-r--r--. 1 boinc boinc      5112 Oct 24 19:28 queuedata.json
[2025-10-25 16:55:38] -rwx------. 1 boinc boinc     36292 Oct 24 19:28 runpilot2-wrapper.sh
[2025-10-25 16:55:38] -rw-r--r--. 1 boinc boinc       100 Oct 25 12:06 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-25 16:55:38] -rwxr-xr-x. 1 boinc boinc      7986 Oct 25 12:06 run_atlas
[2025-10-25 16:55:38] -rw-r--r--. 1 boinc boinc       105 Oct 25 12:06 job.xml
[2025-10-25 16:55:38] -rw-r--r--. 2 boinc boinc 229664580 Oct 25 12:06 EVNT.46771634._004881.pool.root.1
[2025-10-25 16:55:38] -rw-r--r--. 2 boinc boinc     15120 Oct 25 12:06 start_atlas.sh
[2025-10-25 16:55:38] drwxrwx--x. 2 boinc boinc        68 Oct 25 12:06 shared
[2025-10-25 16:55:38] -rw-r--r--. 2 boinc boinc    569690 Oct 25 12:06 input.tar.gz
[2025-10-25 16:55:38] -rw-r--r--. 1 boinc boinc      6390 Oct 25 12:06 init_data.xml
[2025-10-25 16:55:38] -rw-r--r--. 1 boinc boinc         0 Oct 25 12:06 boinc_lockfile
[2025-10-25 16:55:38] -rw-r--r--. 1 boinc boinc      2562 Oct 25 12:06 pandaJob.out
[2025-10-25 16:55:38] -rw-------. 1 boinc boinc    978304 Oct 25 12:09 agis_schedconf.cvmfs.json
[2025-10-25 16:55:38] drwx------. 5 boinc boinc      4096 Oct 25 12:10 pilot3
[2025-10-25 16:55:38] -rw-------. 1 boinc boinc 212266361 Oct 25 16:51 HITS.46771637._122389.pool.root.1
[2025-10-25 16:55:38] -rw-r--r--. 1 boinc boinc       531 Oct 25 16:52 boinc_task_state.xml
[2025-10-25 16:55:38] -rw-------. 1 boinc boinc      1015 Oct 25 16:53 memory_monitor_summary.json
[2025-10-25 16:55:38] -rw-------. 1 boinc boinc   1560772 Oct 25 16:53 agis_ddmendpoints.agis.ALL.json
[2025-10-25 16:55:38] -rw-------. 1 boinc boinc    507498 Oct 25 16:53 log.46771637._122389.job.log.tgz.1
[2025-10-25 16:55:38] -rw-------. 1 boinc boinc        95 Oct 25 16:54 pilot_heartbeat.json
[2025-10-25 16:55:38] -rw-------. 1 boinc boinc      7786 Oct 25 16:54 heartbeat.json
[2025-10-25 16:55:38] -rw-r--r--. 1 boinc boinc      8192 Oct 25 16:55 boinc_mmap_file
[2025-10-25 16:55:38] -rw-r--r--. 1 boinc boinc        28 Oct 25 16:55 wrapper_checkpoint.txt
[2025-10-25 16:55:38] -rw-------. 1 boinc boinc      4957 Oct 25 16:55 pilotlog.txt
[2025-10-25 16:55:38] -rw-------. 1 boinc boinc   2270771 Oct 25 16:55 log.46771637._122389.job.log.1
[2025-10-25 16:55:38] -rw-------. 1 boinc boinc       357 Oct 25 16:55 output.list
[2025-10-25 16:55:38] -rw-r--r--. 1 boinc boinc       620 Oct 25 16:55 runtime_log
[2025-10-25 16:55:38] -rw-------. 1 boinc boinc   2795520 Oct 25 16:55 result.tar.gz
[2025-10-25 16:55:38] -rw-------. 1 boinc boinc       657 Oct 25 16:55 wWYMDm6laW8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmsXCODmQ6cnon.diag
[2025-10-25 16:55:38] -rw-r--r--. 1 boinc boinc      8717 Oct 25 16:55 runtime_log.err
[2025-10-25 16:55:38] -rw-r--r--. 1 boinc boinc     21263 Oct 25 16:55 stderr.txt
[2025-10-25 16:55:38] HITS file was successfully produced:
[2025-10-25 16:55:38] -rw-------. 1 boinc boinc 212266361 Oct 25 16:51 shared/HITS.pool.root.1
[2025-10-25 16:55:38]  *** Contents of shared directory: ***
[2025-10-25 16:55:38] total 434884
[2025-10-25 16:55:38] -rw-r--r--. 2 boinc boinc 229664580 Oct 25 12:06 ATLAS.root_0
[2025-10-25 16:55:38] -rw-r--r--. 2 boinc boinc     15120 Oct 25 12:06 start_atlas.sh
[2025-10-25 16:55:38] -rw-r--r--. 2 boinc boinc    569690 Oct 25 12:06 input.tar.gz
[2025-10-25 16:55:38] -rw-------. 1 boinc boinc 212266361 Oct 25 16:51 HITS.pool.root.1
[2025-10-25 16:55:38] -rw-------. 1 boinc boinc   2795520 Oct 25 16:55 result.tar.gz
16:55:40 (16457): run_atlas exited; CPU time 63488.433037
16:55:40 (16457): called boinc_finish(0)

</stderr_txt>
]]>

©2025 CERN