Stderr output

<core_client_version>8.0.4</core_client_version>
<![CDATA[
<stderr_txt>
12:35:02 (3423232): wrapper (7.7.26015): starting
12:35:02 (3423232): wrapper: running run_atlas (--nthreads 3)
[2025-10-25 12:35:02] Arguments: --nthreads 3
[2025-10-25 12:35:02] Threads: 3
[2025-10-25 12:35:02] Checking for CVMFS
[2025-10-25 12:35:02] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-25 12:35:02] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-25 12:35:02] Running cvmfs_config stat atlas.cern.ch
[2025-10-25 12:35:02] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-25 12:35:02] 2.9.2.0 1615638 6255 87544 152115 2 57 24731536 36864000 0 130560 0 4743286 99.989 236536 935 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-10-25 12:35:02] CVMFS is ok
[2025-10-25 12:35:02] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-25 12:35:02] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-25 12:35:02] Further information can be found at the LHC@home message board.
[2025-10-25 12:35:02] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-25 12:35:02] Checking for apptainer binary...
[2025-10-25 12:35:02] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-25 12:35:02] Running /usr/bin/apptainer --version
[2025-10-25 12:35:02] apptainer version 1.3.6-4.2
[2025-10-25 12:35:02] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-25 12:35:02] thA325b
[2025-10-25 12:35:02] apptainer works
[2025-10-25 12:35:02] Set ATHENA_PROC_NUMBER=3
[2025-10-25 12:35:02] Set ATHENA_CORE_NUMBER=3
[2025-10-25 12:35:02] Starting ATLAS job with PandaID=6855849773
[2025-10-25 12:35:02] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-25 14:05:37]  *** The last 200 lines of the pilot log: ***
[2025-10-25 14:05:37]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-10-25 14:05:37]  replicas=None
[2025-10-25 14:05:37]  scope=mc23_13p6TeV
[2025-10-25 14:05:37]  status=None
[2025-10-25 14:05:37]  status_code=0
[2025-10-25 14:05:37]  storage_token=
[2025-10-25 14:05:37]  surl=/local/data/boinc/slots/0/PanDA_Pilot-6855849773/log.46771637._122321.job.log.tgz.1
[2025-10-25 14:05:37]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/4f/1f/log.46771637._122321.job.log.tgz.1
[2025-10-25 14:05:37]  workdir=None
[2025-10-25 14:05:37] ]
[2025-10-25 14:05:37] 2025-10-25 12:04:59,972 | INFO     | transferring file log.46771637._122321.job.log.tgz.1 from /local/data/boinc/slots/0/PanDA_Pilot-6855849773/log.46771637._122321.job.log.tgz.1 to /local/data/boinc/
[2025-10-25 14:05:37] 2025-10-25 12:04:59,972 | INFO     | executing command: /usr/bin/env mv /local/data/boinc/slots/0/PanDA_Pilot-6855849773/log.46771637._122321.job.log.tgz.1 /local/data/boinc/slots/0/log.46771637._1223
[2025-10-25 14:05:37] 2025-10-25 12:04:59,984 | INFO     | adding to output.list: log.46771637._122321.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/4f/1f/log.46771637._122321.job.log.tg
[2025-10-25 14:05:37] 2025-10-25 12:04:59,985 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-10-25 14:05:37] 2025-10-25 12:04:59,985 | INFO     | summary of transferred files:
[2025-10-25 14:05:37] 2025-10-25 12:04:59,985 | INFO     |  -- lfn=log.46771637._122321.job.log.tgz.1, status_code=0, status=transferred
[2025-10-25 14:05:37] 2025-10-25 12:04:59,985 | INFO     | stage-out finished correctly
[2025-10-25 14:05:37] 2025-10-25 12:05:00,014 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-10-25 14:05:37] 2025-10-25 12:05:00,621 | INFO     | time since job start (5393s) is within the limit (172800.0s)
[2025-10-25 14:05:37] 2025-10-25 12:05:00,747 | INFO     | monitor loop #415: job 0:6855849773 is in state 'finished'
[2025-10-25 14:05:37] 2025-10-25 12:05:00,747 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-25 14:05:37] 2025-10-25 12:05:01,035 | INFO     | job 6855849773 has state=finished
[2025-10-25 14:05:37] 2025-10-25 12:05:01,036 | INFO     | preparing for final server update for job 6855849773 in state='finished'
[2025-10-25 14:05:37] 2025-10-25 12:05:01,036 | INFO     | this job has now completed (state=finished)
[2025-10-25 14:05:37] 2025-10-25 12:05:01,036 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-10-25 14:05:37] 2025-10-25 12:05:01,036 | INFO     | log transfer has been attempted: DONE
[2025-10-25 14:05:37] 2025-10-25 12:05:01,036 | INFO     | job 6855849773 has finished - writing final server update
[2025-10-25 14:05:37] 2025-10-25 12:05:01,037 | INFO     | total number of processed events: 400 (read)
[2025-10-25 14:05:37] 2025-10-25 12:05:01,037 | INFO     | executing command: lscpu
[2025-10-25 14:05:37] 2025-10-25 12:05:01,051 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-10-25 14:05:37] 2025-10-25 12:05:01,679 | INFO     | PID=3426958 has CPU usage=2.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-25 14:05:37] 2025-10-25 12:05:02,680 | INFO     | time since job start (5395s) is within the limit (172800.0s)
[2025-10-25 14:05:37] 2025-10-25 12:05:03,250 | INFO     | monitor loop #416: job 0:6855849773 is in state 'finished'
[2025-10-25 14:05:37] 2025-10-25 12:05:03,250 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-25 14:05:37] 2025-10-25 12:05:04,685 | INFO     | time since job start (5397s) is within the limit (172800.0s)
[2025-10-25 14:05:37] 2025-10-25 12:05:04,860 | INFO     | CPU arch script returned: x86-64-v3
[2025-10-25 14:05:37] 2025-10-25 12:05:04,861 | INFO     | found 6 cores (6 cores per socket, 1 socket) HT, CPU MHz: 3573.1389166666663
[2025-10-25 14:05:37] 2025-10-25 12:05:04,862 | INFO     | using path: /local/data/boinc/slots/0/PanDA_Pilot-6855849773/memory_monitor_summary.json (trf name=prmon)
[2025-10-25 14:05:37] 2025-10-25 12:05:04,863 | INFO     | extracted standard info from prmon json
[2025-10-25 14:05:37] 2025-10-25 12:05:04,863 | INFO     | extracted standard memory fields from prmon json
[2025-10-25 14:05:37] 2025-10-25 12:05:04,863 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-25 14:05:37] 2025-10-25 12:05:04,863 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-25 14:05:37] 2025-10-25 12:05:04,863 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-25 14:05:37] 2025-10-25 12:05:04,864 | INFO     | fitting pss+swap vs Time
[2025-10-25 14:05:37] 2025-10-25 12:05:04,864 | INFO     | sum of square deviations: 170944600.5
[2025-10-25 14:05:37] 2025-10-25 12:05:04,864 | INFO     | sum of deviations: -9660006360.0
[2025-10-25 14:05:37] 2025-10-25 12:05:04,864 | INFO     | mean x: 1761391302.5
[2025-10-25 14:05:37] 2025-10-25 12:05:04,864 | INFO     | mean y: 2426782.6097560977
[2025-10-25 14:05:37] 2025-10-25 12:05:04,864 | INFO     | -- intersect: 99537896957.33858
[2025-10-25 14:05:37] 2025-10-25 12:05:04,864 | INFO     | intersect: 99537896957.33858
[2025-10-25 14:05:37] 2025-10-25 12:05:04,864 | INFO     | chi2: 0.06372285620382126
[2025-10-25 14:05:37] 2025-10-25 12:05:04,864 | INFO     | -- intersect: 99537896957.33858
[2025-10-25 14:05:37] 2025-10-25 12:05:04,864 | INFO     | current memory leak: -56.51 B/s (using 82 data points, chi2=0.06)
[2025-10-25 14:05:37] 2025-10-25 12:05:04,864 | INFO     | could have reported an average CPU frequency of 3799 MHz (6 samples)
[2025-10-25 14:05:37] 2025-10-25 12:05:04,864 | INFO     | ..............................
[2025-10-25 14:05:37] 2025-10-25 12:05:04,864 | INFO     | . Timing measurements:
[2025-10-25 14:05:37] 2025-10-25 12:05:04,864 | INFO     | . get job = 0 s
[2025-10-25 14:05:37] 2025-10-25 12:05:04,864 | INFO     | . initial setup = 1 s
[2025-10-25 14:05:37] 2025-10-25 12:05:04,864 | INFO     | . payload setup = 2 s
[2025-10-25 14:05:37] 2025-10-25 12:05:04,864 | INFO     | . stage-in = 0 s
[2025-10-25 14:05:37] 2025-10-25 12:05:04,864 | INFO     | . payload execution = 5372 s
[2025-10-25 14:05:37] 2025-10-25 12:05:04,864 | INFO     | . stage-out = 0 s
[2025-10-25 14:05:37] 2025-10-25 12:05:04,865 | INFO     | . log creation = 0 s
[2025-10-25 14:05:37] 2025-10-25 12:05:04,865 | INFO     | ..............................
[2025-10-25 14:05:37] 2025-10-25 12:05:05,299 | INFO     | 
[2025-10-25 14:05:37] 2025-10-25 12:05:05,299 | INFO     | job summary report
[2025-10-25 14:05:37] 2025-10-25 12:05:05,299 | INFO     | --------------------------------------------------
[2025-10-25 14:05:37] 2025-10-25 12:05:05,299 | INFO     | PanDA job id: 6855849773
[2025-10-25 14:05:37] 2025-10-25 12:05:05,299 | INFO     | task id: 46771637
[2025-10-25 14:05:37] 2025-10-25 12:05:05,299 | INFO     | errors: (none)
[2025-10-25 14:05:37] 2025-10-25 12:05:05,299 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-25 14:05:37] 2025-10-25 12:05:05,299 | INFO     | pilot state: finished 
[2025-10-25 14:05:37] 2025-10-25 12:05:05,299 | INFO     | transexitcode: 0
[2025-10-25 14:05:37] 2025-10-25 12:05:05,299 | INFO     | exeerrorcode: 0
[2025-10-25 14:05:37] 2025-10-25 12:05:05,299 | INFO     | exeerrordiag: 
[2025-10-25 14:05:37] 2025-10-25 12:05:05,299 | INFO     | exitcode: 0
[2025-10-25 14:05:37] 2025-10-25 12:05:05,300 | INFO     | exitmsg: OK
[2025-10-25 14:05:37] 2025-10-25 12:05:05,300 | INFO     | cpuconsumptiontime: 15518 s
[2025-10-25 14:05:37] 2025-10-25 12:05:05,300 | INFO     | nevents: 400
[2025-10-25 14:05:37] 2025-10-25 12:05:05,300 | INFO     | neventsw: 0
[2025-10-25 14:05:37] 2025-10-25 12:05:05,300 | INFO     | pid: 3433395
[2025-10-25 14:05:37] 2025-10-25 12:05:05,300 | INFO     | pgrp: 3433395
[2025-10-25 14:05:37] 2025-10-25 12:05:05,300 | INFO     | corecount: 3
[2025-10-25 14:05:37] 2025-10-25 12:05:05,300 | INFO     | event service: False
[2025-10-25 14:05:37] 2025-10-25 12:05:05,300 | INFO     | sizes: {0: 2348938, 3: 2349200, 11: 2349228, 5379: 2384939, 5384: 2385077}
[2025-10-25 14:05:37] 2025-10-25 12:05:05,300 | INFO     | --------------------------------------------------
[2025-10-25 14:05:37] 2025-10-25 12:05:05,300 | INFO     | 
[2025-10-25 14:05:37] 2025-10-25 12:05:05,300 | INFO     | executing command: ls -lF /local/data/boinc/slots/0
[2025-10-25 14:05:37] 2025-10-25 12:05:05,313 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-25 14:05:37] 2025-10-25 12:05:05,313 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-25 14:05:37] 2025-10-25 12:05:05,313 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-25 14:05:37] 2025-10-25 12:05:05,313 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-25 14:05:37] 2025-10-25 12:05:05,313 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-25 14:05:37] 2025-10-25 12:05:05,313 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-25 14:05:37] 2025-10-25 12:05:05,313 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-25 14:05:37] 2025-10-25 12:05:05,313 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-25 14:05:37] 2025-10-25 12:05:05,313 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-25 14:05:37] 2025-10-25 12:05:05,314 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-25 14:05:37] 2025-10-25 12:05:05,314 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-25 14:05:37] 2025-10-25 12:05:05,314 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-25 14:05:37] 2025-10-25 12:05:05,314 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-25 14:05:37] 2025-10-25 12:05:05,314 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-25 14:05:37] 2025-10-25 12:05:05,314 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-25 14:05:37] 2025-10-25 12:05:05,314 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-25 14:05:37] 2025-10-25 12:05:05,314 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-25 14:05:37] 2025-10-25 12:05:05,314 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-25 14:05:37] 2025-10-25 12:05:05,314 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-25 14:05:37] 2025-10-25 12:05:05,314 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-25 14:05:37] 2025-10-25 12:05:05,314 | INFO     | job 6855849773 has completed (purged errors)
[2025-10-25 14:05:37] 2025-10-25 12:05:05,314 | INFO     | overall cleanup function is called
[2025-10-25 14:05:37] 2025-10-25 12:05:06,320 | INFO     | --- collectZombieJob: --- 10, [3433395]
[2025-10-25 14:05:37] 2025-10-25 12:05:06,321 | INFO     | zombie collector waiting for pid 3433395
[2025-10-25 14:05:37] 2025-10-25 12:05:06,321 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-25 14:05:37] 2025-10-25 12:05:06,321 | INFO     | collected zombie processes
[2025-10-25 14:05:37] 2025-10-25 12:05:06,321 | INFO     | will attempt to kill all subprocesses of pid=3433395
[2025-10-25 14:05:37] 2025-10-25 12:05:06,359 | INFO     | process IDs to be killed: [3433395] (in reverse order)
[2025-10-25 14:05:37] 2025-10-25 12:05:06,382 | WARNING  | found no corresponding commands to process id(s)
[2025-10-25 14:05:37] 2025-10-25 12:05:06,383 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-25 14:05:37] 2025-10-25 12:05:06,384 | INFO     | did not find any defunct processes belonging to 3433395
[2025-10-25 14:05:37] 2025-10-25 12:05:06,385 | INFO     | did not find any defunct processes belonging to 3433395
[2025-10-25 14:05:37] 2025-10-25 12:05:06,385 | INFO     | ready for new job
[2025-10-25 14:05:37] 2025-10-25 12:05:06,385 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-25 14:05:37] 2025-10-25 12:05:06,385 | INFO     | ***************************************
[2025-10-25 14:05:37] 2025-10-25 12:05:06,386 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-25 14:05:37] 2025-10-25 12:05:06,386 | INFO     | ***************************************
[2025-10-25 14:05:37] 2025-10-25 12:05:06,386 | INFO     | 
[2025-10-25 14:05:37] 2025-10-25 12:05:06,386 | INFO     | architecture information:
[2025-10-25 14:05:37] 2025-10-25 12:05:06,386 | INFO     | executing command: cat /etc/os-release
[2025-10-25 14:05:37] 2025-10-25 12:05:06,395 | INFO     | cat /etc/os-release:
[2025-10-25 14:05:37] NAME="CentOS Linux"
[2025-10-25 14:05:37] VERSION="7 (Core)"
[2025-10-25 14:05:37] ID="centos"
[2025-10-25 14:05:37] ID_LIKE="rhel fedora"
[2025-10-25 14:05:37] VERSION_ID="7"
[2025-10-25 14:05:37] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-25 14:05:37] ANSI_COLOR="0;31"
[2025-10-25 14:05:37] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-25 14:05:37] HOME_URL="https://www.centos.org/"
[2025-10-25 14:05:37] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-25 14:05:37] 
[2025-10-25 14:05:37] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-25 14:05:37] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-25 14:05:37] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-25 14:05:37] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-25 14:05:37] 
[2025-10-25 14:05:37] 2025-10-25 12:05:06,395 | INFO     | ***************************************
[2025-10-25 14:05:37] 2025-10-25 12:05:06,575 [wrapper] supervise_pilot (15 min periods counter: 7)
[2025-10-25 14:05:37] 2025-10-25 12:05:06,896 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-10-25 14:05:37] 2025-10-25 12:05:06,908 | INFO     | sufficient remaining disk space (234518216704 B)
[2025-10-25 14:05:37] 2025-10-25 12:05:06,908 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-25 14:05:37] 2025-10-25 12:05:06,908 | INFO     | current server update state: UPDATING_FINAL
[2025-10-25 14:05:37] 2025-10-25 12:05:06,908 | INFO     | update_server=False
[2025-10-25 14:05:37] 2025-10-25 12:05:06,908 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-25 14:05:37] 2025-10-25 12:05:06,908 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-25 14:05:37] 2025-10-25 12:05:06,908 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-25 14:05:37] 2025-10-25 12:05:06,908 | INFO     | aborting loop
[2025-10-25 14:05:37] 2025-10-25 12:05:07,598 | INFO     | all job control threads have been joined
[2025-10-25 14:05:37] 2025-10-25 12:05:07,780 | INFO     | all data control threads have been joined
[2025-10-25 14:05:37] 2025-10-25 12:05:07,913 | INFO     | [job] retrieve thread has finished
[2025-10-25 14:05:37] 2025-10-25 12:05:07,914 | INFO     | [job] job monitor thread has finished
[2025-10-25 14:05:37] 2025-10-25 12:05:07,974 | INFO     | [payload] execute_payloads thread has finished
[2025-10-25 14:05:37] 2025-10-25 12:05:07,989 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-25 14:05:37] 2025-10-25 12:05:08,025 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-25 14:05:37] 2025-10-25 12:05:08,230 | INFO     | all payload control threads have been joined
[2025-10-25 14:05:37] 2025-10-25 12:05:08,501 | INFO     | [payload] validate_post thread has finished
[2025-10-25 14:05:37] 2025-10-25 12:05:08,604 | INFO     | [job] control thread has finished
[2025-10-25 14:05:37] 2025-10-25 12:05:08,666 | INFO     | [data] copytool_in thread has finished
[2025-10-25 14:05:37] 2025-10-25 12:05:08,785 | INFO     | [data] control thread has finished
[2025-10-25 14:05:37] 2025-10-25 12:05:09,211 | INFO     | [payload] failed_post thread has finished
[2025-10-25 14:05:37] 2025-10-25 12:05:09,236 | INFO     | [payload] control thread has finished
[2025-10-25 14:05:37] 2025-10-25 12:05:09,296 | INFO     | [job] validate thread has finished
[2025-10-25 14:05:37] 2025-10-25 12:05:09,369 | INFO     | [job] create_data_payload thread has finished
[2025-10-25 14:05:37] 2025-10-25 12:05:09,397 | INFO     | [payload] validate_pre thread has finished
[2025-10-25 14:05:37] 2025-10-25 12:05:09,906 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-25 14:05:37] 2025-10-25 12:05:10,031 | INFO     | [data] copytool_out thread has finished
[2025-10-25 14:05:37] 2025-10-25 12:05:10,912 | INFO     | [job] queue monitor thread has finished
[2025-10-25 14:05:37] 2025-10-25 12:05:10,912 | INFO     | [data] queue_monitor thread has finished
[2025-10-25 14:05:37] 2025-10-25 12:05:15,147 | INFO     | [monitor] cgroup control has ended
[2025-10-25 14:05:37] 2025-10-25 12:05:17,248 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140454468491072)>', '<ExcThread(monitor, started 140454112765696)>']
[2025-10-25 14:05:37] 2025-10-25 12:05:22,274 | INFO     | all workflow threads have been joined
[2025-10-25 14:05:37] 2025-10-25 12:05:22,274 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-25 14:05:37] 2025-10-25 12:05:22,274 | INFO     | traces error code: 0
[2025-10-25 14:05:37] 2025-10-25 12:05:22,275 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-25 14:05:37] 2025-10-25 12:05:37,797 | INFO     | PID=3426958 has CPU usage=0.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-25 14:05:37] 2025-10-25 12:05:37,797 | INFO     | found 0 job(s) in 20 queues
[2025-10-25 14:05:37] 2025-10-25 12:05:37,797 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-25 14:05:37] 2025-10-25 12:05:37,797 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-25 14:05:37] 2025-10-25 12:05:37,797 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-25 14:05:37] 2025-10-25 12:05:37,797 | CRITICAL | thread 'MainThread' is not alive
[2025-10-25 14:05:37] 2025-10-25 12:05:37,797 | INFO     | [monitor] control thread has ended
[2025-10-25 14:05:37] 2025-10-25 12:05:37,845 [wrapper] ==== pilot stdout END ====
[2025-10-25 14:05:37] 2025-10-25 12:05:37,847 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-25 14:05:37] 2025-10-25 12:05:37,849 [wrapper] pilotpid: 3426958
[2025-10-25 14:05:37] 2025-10-25 12:05:37,851 [wrapper] Pilot exit status: 0
[2025-10-25 14:05:37] 2025-10-25 12:05:37,858 [wrapper] pandaids: 6855849773
[2025-10-25 14:05:37] 2025-10-25 12:05:37,873 [wrapper] cleanup supervisor_pilot 3447984 3426959
[2025-10-25 14:05:37] 2025-10-25 12:05:37,875 [wrapper] Test setup, not cleaning
[2025-10-25 14:05:37] 2025-10-25 12:05:37,878 [wrapper] apfmon messages muted
[2025-10-25 14:05:37] 2025-10-25 12:05:37,880 [wrapper] ==== wrapper stdout END ====
[2025-10-25 14:05:37] 2025-10-25 12:05:37,882 [wrapper] ==== wrapper stderr END ====
[2025-10-25 14:05:37]  *** Error codes and diagnostics ***
[2025-10-25 14:05:37]     "exeErrorCode": 0,
[2025-10-25 14:05:37]     "exeErrorDiag": "",
[2025-10-25 14:05:37]     "pilotErrorCode": 0,
[2025-10-25 14:05:37]     "pilotErrorDiag": "",
[2025-10-25 14:05:37]  *** Listing of results directory ***
[2025-10-25 14:05:37] total 432016
[2025-10-25 14:05:37] -rw-r--r-- 1 boinc boinc    557409 Oct 24 18:34 pilot3.tar.gz
[2025-10-25 14:05:37] -rw-r--r-- 1 boinc boinc      5112 Oct 24 19:23 queuedata.json
[2025-10-25 14:05:37] -rwx------ 1 boinc boinc     36292 Oct 24 19:24 runpilot2-wrapper.sh
[2025-10-25 14:05:37] -rw-r--r-- 1 boinc boinc       100 Oct 25 12:35 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-25 14:05:37] -rwxr-xr-x 1 boinc boinc      7986 Oct 25 12:35 run_atlas
[2025-10-25 14:05:37] -rw-r--r-- 1 boinc boinc       105 Oct 25 12:35 job.xml
[2025-10-25 14:05:37] -rw-r--r-- 2 boinc boinc 230726311 Oct 25 12:35 EVNT.46771634._004879.pool.root.1
[2025-10-25 14:05:37] -rw-r--r-- 1 boinc boinc      6919 Oct 25 12:35 init_data.xml
[2025-10-25 14:05:37] drwxrwx--x 2 boinc boinc      4096 Oct 25 12:35 shared
[2025-10-25 14:05:37] -rw-r--r-- 2 boinc boinc    569688 Oct 25 12:35 input.tar.gz
[2025-10-25 14:05:37] -rw-r--r-- 2 boinc boinc     15120 Oct 25 12:35 start_atlas.sh
[2025-10-25 14:05:37] -rw-r--r-- 1 boinc boinc         0 Oct 25 12:35 boinc_lockfile
[2025-10-25 14:05:37] -rw-r--r-- 1 boinc boinc      2562 Oct 25 12:35 pandaJob.out
[2025-10-25 14:05:37] -rw------- 1 boinc boinc    978296 Oct 25 12:35 agis_schedconf.cvmfs.json
[2025-10-25 14:05:37] -rw------- 1 boinc boinc   1560772 Oct 25 12:35 agis_ddmendpoints.agis.ALL.json
[2025-10-25 14:05:37] drwx------ 5 boinc boinc      4096 Oct 25 12:35 pilot3
[2025-10-25 14:05:37] -rw-r--r-- 1 boinc boinc       530 Oct 25 14:04 boinc_task_state.xml
[2025-10-25 14:05:37] -rw------- 1 boinc boinc 205678108 Oct 25 14:04 HITS.46771637._122321.pool.root.1
[2025-10-25 14:05:37] -rw------- 1 boinc boinc      1019 Oct 25 14:04 memory_monitor_summary.json
[2025-10-25 14:05:37] -rw------- 1 boinc boinc    250795 Oct 25 14:04 log.46771637._122321.job.log.tgz.1
[2025-10-25 14:05:37] -rw------- 1 boinc boinc      7770 Oct 25 14:05 heartbeat.json
[2025-10-25 14:05:37] -rw-r--r-- 1 boinc boinc      8192 Oct 25 14:05 boinc_mmap_file
[2025-10-25 14:05:37] -rw-r--r-- 1 boinc boinc        27 Oct 25 14:05 wrapper_checkpoint.txt
[2025-10-25 14:05:37] -rw------- 1 boinc boinc       817 Oct 25 14:05 pilotlog.txt
[2025-10-25 14:05:37] -rw------- 1 boinc boinc        95 Oct 25 14:05 pilot_heartbeat.json
[2025-10-25 14:05:37] -rw------- 1 boinc boinc    787724 Oct 25 14:05 log.46771637._122321.job.log.1
[2025-10-25 14:05:37] -rw------- 1 boinc boinc       357 Oct 25 14:05 output.list
[2025-10-25 14:05:37] -rw-r--r-- 1 boinc boinc       620 Oct 25 14:05 runtime_log
[2025-10-25 14:05:37] -rw------- 1 boinc boinc   1054720 Oct 25 14:05 result.tar.gz
[2025-10-25 14:05:37] -rw------- 1 boinc boinc       659 Oct 25 14:05 s6HLDmUhaW8n9Rq4apOajLDm4fhM0noT9bVof3QYDmlhlMDmhFBaem.diag
[2025-10-25 14:05:37] -rw-r--r-- 1 boinc boinc      8782 Oct 25 14:05 runtime_log.err
[2025-10-25 14:05:37] -rw-r--r-- 1 boinc boinc     21889 Oct 25 14:05 stderr.txt
[2025-10-25 14:05:37] HITS file was successfully produced:
[2025-10-25 14:05:37] -rw------- 1 boinc boinc 205678108 Oct 25 14:04 shared/HITS.pool.root.1
[2025-10-25 14:05:37]  *** Contents of shared directory: ***
[2025-10-25 14:05:37] total 427796
[2025-10-25 14:05:37] -rw-r--r-- 2 boinc boinc 230726311 Oct 25 12:35 ATLAS.root_0
[2025-10-25 14:05:37] -rw-r--r-- 2 boinc boinc    569688 Oct 25 12:35 input.tar.gz
[2025-10-25 14:05:37] -rw-r--r-- 2 boinc boinc     15120 Oct 25 12:35 start_atlas.sh
[2025-10-25 14:05:37] -rw------- 1 boinc boinc 205678108 Oct 25 14:04 HITS.pool.root.1
[2025-10-25 14:05:37] -rw------- 1 boinc boinc   1054720 Oct 25 14:05 result.tar.gz
14:05:39 (3423232): run_atlas exited; CPU time 15537.912397
14:05:39 (3423232): called boinc_finish(0)

</stderr_txt>
]]>

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