Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
09:51:26 (3552086): wrapper (7.7.26015): starting
09:51:26 (3552086): wrapper: running run_atlas (--nthreads 4)
[2025-10-25 09:51:26] Arguments: --nthreads 4
[2025-10-25 09:51:26] Threads: 4
[2025-10-25 09:51:26] Checking for CVMFS
[2025-10-25 09:51:26] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-25 09:51:26] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-25 09:51:26] Running cvmfs_config stat atlas.cern.ch
[2025-10-25 09:51:26] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-25 09:51:26] 2.9.2.0 1545554 6269 96548 152110 3 57 31239473 36864001 0 130560 0 5167746 99.990 236087 1027 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-10-25 09:51:26] CVMFS is ok
[2025-10-25 09:51:26] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-25 09:51:26] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-25 09:51:26] Further information can be found at the LHC@home message board.
[2025-10-25 09:51:26] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-25 09:51:26] Checking for apptainer binary...
[2025-10-25 09:51:26] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-25 09:51:26] Running /usr/bin/apptainer --version
[2025-10-25 09:51:26] apptainer version 1.4.1-1.1
[2025-10-25 09:51:26] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-25 09:51:26] thA309
[2025-10-25 09:51:26] apptainer works
[2025-10-25 09:51:26] Set ATHENA_PROC_NUMBER=4
[2025-10-25 09:51:26] Set ATHENA_CORE_NUMBER=4
[2025-10-25 09:51:26] Starting ATLAS job with PandaID=6855794109
[2025-10-25 09:51:26] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-25 11:08:45]  *** The last 200 lines of the pilot log: ***
[2025-10-25 11:08:45] 2025-10-25 09:08:08,895 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-25 11:08:45] 2025-10-25 09:08:08,895 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-25 11:08:45] 2025-10-25 09:08:08,895 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-25 11:08:45] 2025-10-25 09:08:08,895 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-25 11:08:45] 2025-10-25 09:08:08,895 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-25 11:08:45] 2025-10-25 09:08:08,895 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-25 11:08:45] 2025-10-25 09:08:08,895 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-25 11:08:45] 2025-10-25 09:08:08,895 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-25 11:08:45] 2025-10-25 09:08:08,895 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-25 11:08:45] 2025-10-25 09:08:08,895 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-25 11:08:45] 2025-10-25 09:08:08,895 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-25 11:08:45] 2025-10-25 09:08:08,896 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-25 11:08:45] 2025-10-25 09:08:08,896 | INFO     | job 6855794109 has completed (purged errors)
[2025-10-25 11:08:45] 2025-10-25 09:08:08,896 | INFO     | overall cleanup function is called
[2025-10-25 11:08:45] 2025-10-25 09:08:09,903 | INFO     | --- collectZombieJob: --- 10, [3562450]
[2025-10-25 11:08:45] 2025-10-25 09:08:09,903 | INFO     | zombie collector waiting for pid 3562450
[2025-10-25 11:08:45] 2025-10-25 09:08:09,903 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-25 11:08:45] 2025-10-25 09:08:09,903 | INFO     | collected zombie processes
[2025-10-25 11:08:45] 2025-10-25 09:08:09,903 | INFO     | will attempt to kill all subprocesses of pid=3562450
[2025-10-25 11:08:45] 2025-10-25 09:08:09,953 | INFO     | process IDs to be killed: [3562450] (in reverse order)
[2025-10-25 11:08:45] 2025-10-25 09:08:09,990 | WARNING  | found no corresponding commands to process id(s)
[2025-10-25 11:08:45] 2025-10-25 09:08:09,990 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-25 11:08:45] 2025-10-25 09:08:09,992 | INFO     | did not find any defunct processes belonging to 3562450
[2025-10-25 11:08:45] 2025-10-25 09:08:09,994 | INFO     | did not find any defunct processes belonging to 3562450
[2025-10-25 11:08:45] 2025-10-25 09:08:09,994 | INFO     | ready for new job
[2025-10-25 11:08:45] 2025-10-25 09:08:09,994 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-25 11:08:45] 2025-10-25 09:08:09,995 | INFO     | ***************************************
[2025-10-25 11:08:45] 2025-10-25 09:08:09,995 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-25 11:08:45] 2025-10-25 09:08:09,995 | INFO     | ***************************************
[2025-10-25 11:08:45] 2025-10-25 09:08:09,995 | INFO     | 
[2025-10-25 11:08:45] 2025-10-25 09:08:09,995 | INFO     | architecture information:
[2025-10-25 11:08:45] 2025-10-25 09:08:09,996 | INFO     | executing command: cat /etc/os-release
[2025-10-25 11:08:45] 2025-10-25 09:08:10,011 | INFO     | cat /etc/os-release:
[2025-10-25 11:08:45] NAME="CentOS Linux"
[2025-10-25 11:08:45] VERSION="7 (Core)"
[2025-10-25 11:08:45] ID="centos"
[2025-10-25 11:08:45] ID_LIKE="rhel fedora"
[2025-10-25 11:08:45] VERSION_ID="7"
[2025-10-25 11:08:45] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-25 11:08:45] ANSI_COLOR="0;31"
[2025-10-25 11:08:45] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-25 11:08:45] HOME_URL="https://www.centos.org/"
[2025-10-25 11:08:45] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-25 11:08:45] 
[2025-10-25 11:08:45] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-25 11:08:45] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-25 11:08:45] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-25 11:08:45] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-25 11:08:45] 
[2025-10-25 11:08:45] 2025-10-25 09:08:10,011 | INFO     | ***************************************
[2025-10-25 11:08:45] 2025-10-25 09:08:10,514 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-10-25 11:08:45] 2025-10-25 09:08:10,533 | INFO     | sufficient remaining disk space (227919527936 B)
[2025-10-25 11:08:45] 2025-10-25 09:08:10,533 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-25 11:08:45] 2025-10-25 09:08:10,533 | INFO     | current server update state: UPDATING_FINAL
[2025-10-25 11:08:45] 2025-10-25 09:08:10,533 | INFO     | update_server=False
[2025-10-25 11:08:45] 2025-10-25 09:08:10,533 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-25 11:08:45] 2025-10-25 09:08:10,533 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-25 11:08:45] 2025-10-25 09:08:10,927 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-10-25 11:08:45] 2025-10-25 09:08:10,927 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-10-25 11:08:45] 2025-10-25 09:08:10,928 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-25 11:08:45] 2025-10-25 09:08:10,928 | INFO     | will abort loop
[2025-10-25 11:08:45] 2025-10-25 09:08:10,992 | INFO     | all job control threads have been joined
[2025-10-25 11:08:45] 2025-10-25 09:08:11,377 | INFO     | all data control threads have been joined
[2025-10-25 11:08:45] 2025-10-25 09:08:11,538 | INFO     | [job] retrieve thread has finished
[2025-10-25 11:08:45] 2025-10-25 09:08:11,551 | INFO     | all payload control threads have been joined
[2025-10-25 11:08:45] 2025-10-25 09:08:11,621 | INFO     | [payload] validate_pre thread has finished
[2025-10-25 11:08:45] 2025-10-25 09:08:11,796 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-25 11:08:45] 2025-10-25 09:08:11,933 | INFO     | [job] job monitor thread has finished
[2025-10-25 11:08:45] 2025-10-25 09:08:11,998 | INFO     | [job] control thread has finished
[2025-10-25 11:08:45] 2025-10-25 09:08:12,106 | INFO     | [payload] failed_post thread has finished
[2025-10-25 11:08:45] 2025-10-25 09:08:12,216 | INFO     | [data] copytool_in thread has finished
[2025-10-25 11:08:45] 2025-10-25 09:08:12,240 | INFO     | [payload] execute_payloads thread has finished
[2025-10-25 11:08:45] 2025-10-25 09:08:12,383 | INFO     | [data] control thread has finished
[2025-10-25 11:08:45] 2025-10-25 09:08:12,540 | INFO     | [data] copytool_out thread has finished
[2025-10-25 11:08:45] 2025-10-25 09:08:12,557 | INFO     | [payload] control thread has finished
[2025-10-25 11:08:45] 2025-10-25 09:08:12,926 | INFO     | [job] validate thread has finished
[2025-10-25 11:08:45] 2025-10-25 09:08:13,036 | INFO     | [job] create_data_payload thread has finished
[2025-10-25 11:08:45] 2025-10-25 09:08:13,086 | INFO     | [payload] validate_post thread has finished
[2025-10-25 11:08:45] 2025-10-25 09:08:13,383 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-25 11:08:45] 2025-10-25 09:08:14,389 | INFO     | [job] queue monitor thread has finished
[2025-10-25 11:08:45] 2025-10-25 09:08:15,803 | INFO     | [data] queue_monitor thread has finished
[2025-10-25 11:08:45] 2025-10-25 09:08:20,856 | INFO     | job.realtimelogging is not enabled
[2025-10-25 11:08:45] 2025-10-25 09:08:21,862 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-25 11:08:45] 2025-10-25 09:08:39,784 | INFO     | [monitor] cgroup control has ended
[2025-10-25 11:08:45] 2025-10-25 09:08:39,972 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140139746469696)>', '<ExcThread(monitor, started 140138793391872)>']
[2025-10-25 11:08:45] 2025-10-25 09:08:41,360 | INFO     | PID=3555880 has CPU usage=2.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-25 11:08:45] 2025-10-25 09:08:41,360 | INFO     | found 0 job(s) in 20 queues
[2025-10-25 11:08:45] 2025-10-25 09:08:41,360 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-25 11:08:45] 2025-10-25 09:08:41,360 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-25 11:08:45] 2025-10-25 09:08:41,360 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-25 11:08:45] 2025-10-25 09:08:41,360 | INFO     | [monitor] control thread has ended
[2025-10-25 11:08:45] 2025-10-25 09:08:44,998 | INFO     | all workflow threads have been joined
[2025-10-25 11:08:45] 2025-10-25 09:08:44,998 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-25 11:08:45] 2025-10-25 09:08:44,999 | INFO     | traces error code: 0
[2025-10-25 11:08:45] 2025-10-25 09:08:45,000 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-25 11:08:45] 2025-10-25 09:08:45,083 [wrapper] ==== pilot stdout END ====
[2025-10-25 11:08:45] 2025-10-25 09:08:45,087 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-25 11:08:45] 2025-10-25 09:08:45,091 [wrapper] pilotpid: 3555880
[2025-10-25 11:08:45] 2025-10-25 09:08:45,095 [wrapper] Pilot exit status: 0
[2025-10-25 11:08:45] 2025-10-25 09:08:45,107 [wrapper] pandaids: 6855794109
[2025-10-25 11:08:45] 2025-10-25 09:08:45,132 [wrapper] cleanup supervisor_pilot 3574668 3555881
[2025-10-25 11:08:45] 2025-10-25 09:08:45,136 [wrapper] Test setup, not cleaning
[2025-10-25 11:08:45] 2025-10-25 09:08:45,140 [wrapper] apfmon messages muted
[2025-10-25 11:08:45] 2025-10-25 09:08:45,144 [wrapper] ==== wrapper stdout END ====
[2025-10-25 11:08:45] 2025-10-25 09:08:45,148 [wrapper] ==== wrapper stderr END ====
[2025-10-25 11:08:45]  *** Error codes and diagnostics ***
[2025-10-25 11:08:45]     "exeErrorCode": 0,
[2025-10-25 11:08:45]     "exeErrorDiag": "",
[2025-10-25 11:08:45]     "pilotErrorCode": 0,
[2025-10-25 11:08:45]     "pilotErrorDiag": "",
[2025-10-25 11:08:45]  *** Listing of results directory ***
[2025-10-25 11:08:45] total 421292
[2025-10-25 11:08:45] -rw-r--r-- 1 boinc boinc    557409 Oct 24 18:34 pilot3.tar.gz
[2025-10-25 11:08:45] -rw-r--r-- 1 boinc boinc      5112 Oct 24 18:53 queuedata.json
[2025-10-25 11:08:45] -rwx------ 1 boinc boinc     36292 Oct 24 18:55 runpilot2-wrapper.sh
[2025-10-25 11:08:45] -rw-r--r-- 1 boinc boinc       100 Oct 25 09:51 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-25 11:08:45] -rwxr-xr-x 1 boinc boinc      7986 Oct 25 09:51 run_atlas
[2025-10-25 11:08:45] -rw-r--r-- 1 boinc boinc       105 Oct 25 09:51 job.xml
[2025-10-25 11:08:45] -rw-r--r-- 2 boinc boinc 225488247 Oct 25 09:51 EVNT.46771634._004863.pool.root.1
[2025-10-25 11:08:45] -rw-r--r-- 2 boinc boinc    569688 Oct 25 09:51 input.tar.gz
[2025-10-25 11:08:45] -rw-r--r-- 2 boinc boinc     15120 Oct 25 09:51 start_atlas.sh
[2025-10-25 11:08:45] drwxrwx--x 2 boinc boinc      4096 Oct 25 09:51 shared
[2025-10-25 11:08:45] -rw-r--r-- 1 boinc boinc         0 Oct 25 09:51 boinc_setup_complete
[2025-10-25 11:08:45] -rw-r--r-- 1 boinc boinc      6377 Oct 25 09:51 init_data.xml
[2025-10-25 11:08:45] -rw-r--r-- 1 boinc boinc         0 Oct 25 09:51 boinc_lockfile
[2025-10-25 11:08:45] -rw-r--r-- 1 boinc boinc      2562 Oct 25 09:51 pandaJob.out
[2025-10-25 11:08:45] -rw------- 1 boinc boinc    978605 Oct 25 09:51 agis_schedconf.cvmfs.json
[2025-10-25 11:08:45] -rw------- 1 boinc boinc   1560772 Oct 25 09:51 agis_ddmendpoints.agis.ALL.json
[2025-10-25 11:08:45] drwx------ 5 boinc boinc      4096 Oct 25 09:51 pilot3
[2025-10-25 11:08:45] -rw------- 1 boinc boinc 200136683 Oct 25 11:07 HITS.46771637._121880.pool.root.1
[2025-10-25 11:08:45] -rw-r--r-- 1 boinc boinc       529 Oct 25 11:07 boinc_task_state.xml
[2025-10-25 11:08:45] -rw------- 1 boinc boinc      1024 Oct 25 11:07 memory_monitor_summary.json
[2025-10-25 11:08:45] -rw------- 1 boinc boinc    261706 Oct 25 11:07 log.46771637._121880.job.log.tgz.1
[2025-10-25 11:08:45] -rw------- 1 boinc boinc        95 Oct 25 11:08 pilot_heartbeat.json
[2025-10-25 11:08:45] -rw------- 1 boinc boinc      7769 Oct 25 11:08 heartbeat.json
[2025-10-25 11:08:45] -rw-r--r-- 1 boinc boinc      8192 Oct 25 11:08 boinc_mmap_file
[2025-10-25 11:08:45] -rw-r--r-- 1 boinc boinc        27 Oct 25 11:08 wrapper_checkpoint.txt
[2025-10-25 11:08:45] -rw------- 1 boinc boinc      5010 Oct 25 11:08 pilotlog.txt
[2025-10-25 11:08:45] -rw------- 1 boinc boinc    678657 Oct 25 11:08 log.46771637._121880.job.log.1
[2025-10-25 11:08:45] -rw------- 1 boinc boinc       357 Oct 25 11:08 output.list
[2025-10-25 11:08:45] -rw-r--r-- 1 boinc boinc       620 Oct 25 11:08 runtime_log
[2025-10-25 11:08:45] -rw------- 1 boinc boinc    962560 Oct 25 11:08 result.tar.gz
[2025-10-25 11:08:45] -rw-r--r-- 1 boinc boinc      8777 Oct 25 11:08 runtime_log.err
[2025-10-25 11:08:45] -rw------- 1 boinc boinc       658 Oct 25 11:08 6H6NDmeFaW8n9Rq4apOajLDm4fhM0noT9bVof3QYDmTelMDmaXGsOn.diag
[2025-10-25 11:08:45] -rw-r--r-- 1 boinc boinc     12359 Oct 25 11:08 stderr.txt
[2025-10-25 11:08:45] HITS file was successfully produced:
[2025-10-25 11:08:45] -rw------- 1 boinc boinc 200136683 Oct 25 11:07 shared/HITS.pool.root.1
[2025-10-25 11:08:45]  *** Contents of shared directory: ***
[2025-10-25 11:08:45] total 417176
[2025-10-25 11:08:45] -rw-r--r-- 2 boinc boinc 225488247 Oct 25 09:51 ATLAS.root_0
[2025-10-25 11:08:45] -rw-r--r-- 2 boinc boinc    569688 Oct 25 09:51 input.tar.gz
[2025-10-25 11:08:45] -rw-r--r-- 2 boinc boinc     15120 Oct 25 09:51 start_atlas.sh
[2025-10-25 11:08:45] -rw------- 1 boinc boinc 200136683 Oct 25 11:07 HITS.pool.root.1
[2025-10-25 11:08:45] -rw------- 1 boinc boinc    962560 Oct 25 11:08 result.tar.gz
11:08:46 (3552086): run_atlas exited; CPU time 17414.268892
11:08:46 (3552086): called boinc_finish(0)

</stderr_txt>
]]>

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