Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
08:12:33 (1733505): wrapper (7.7.26015): starting
08:12:33 (1733505): wrapper: running run_atlas (--nthreads 4)
[2025-10-25 08:12:33] Arguments: --nthreads 4
[2025-10-25 08:12:33] Threads: 4
[2025-10-25 08:12:33] Checking for CVMFS
[2025-10-25 08:12:33] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-25 08:12:33] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-25 08:12:33] Running cvmfs_config stat atlas.cern.ch
[2025-10-25 08:12:34] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-25 08:12:34] 2.9.2.0 3052 5272 98888 152108 3 57 32030911 36864001 0 130560 0 4492827 99.990 202481 879 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-10-25 08:12:34] CVMFS is ok
[2025-10-25 08:12:34] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-25 08:12:34] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-25 08:12:34] Further information can be found at the LHC@home message board.
[2025-10-25 08:12:34] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-25 08:12:34] Checking for apptainer binary...
[2025-10-25 08:12:34] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-25 08:12:34] Running /usr/bin/apptainer --version
[2025-10-25 08:12:34] apptainer version 1.4.1-1.1
[2025-10-25 08:12:34] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-25 08:12:34] thA334
[2025-10-25 08:12:34] apptainer works
[2025-10-25 08:12:34] Set ATHENA_PROC_NUMBER=4
[2025-10-25 08:12:34] Set ATHENA_CORE_NUMBER=4
[2025-10-25 08:12:34] Starting ATLAS job with PandaID=6855693156
[2025-10-25 08:12:34] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-25 09:32:53]  *** The last 200 lines of the pilot log: ***
[2025-10-25 09:32:53] 2025-10-25 07:32:24,443 | INFO     | zombie collector waiting for pid 1743850
[2025-10-25 09:32:53] 2025-10-25 07:32:24,443 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-25 09:32:53] 2025-10-25 07:32:24,443 | INFO     | collected zombie processes
[2025-10-25 09:32:53] 2025-10-25 07:32:24,443 | INFO     | will attempt to kill all subprocesses of pid=1743850
[2025-10-25 09:32:53] 2025-10-25 07:32:24,487 | INFO     | process IDs to be killed: [1743850] (in reverse order)
[2025-10-25 09:32:53] 2025-10-25 07:32:24,517 | WARNING  | found no corresponding commands to process id(s)
[2025-10-25 09:32:53] 2025-10-25 07:32:24,518 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-25 09:32:53] 2025-10-25 07:32:24,519 | INFO     | did not find any defunct processes belonging to 1743850
[2025-10-25 09:32:53] 2025-10-25 07:32:24,520 | INFO     | did not find any defunct processes belonging to 1743850
[2025-10-25 09:32:53] 2025-10-25 07:32:24,520 | INFO     | ready for new job
[2025-10-25 09:32:53] 2025-10-25 07:32:24,521 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-25 09:32:53] 2025-10-25 07:32:24,521 | INFO     | ***************************************
[2025-10-25 09:32:53] 2025-10-25 07:32:24,521 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-25 09:32:53] 2025-10-25 07:32:24,521 | INFO     | ***************************************
[2025-10-25 09:32:53] 2025-10-25 07:32:24,521 | INFO     | 
[2025-10-25 09:32:53] 2025-10-25 07:32:24,522 | INFO     | architecture information:
[2025-10-25 09:32:53] 2025-10-25 07:32:24,522 | INFO     | executing command: cat /etc/os-release
[2025-10-25 09:32:53] 2025-10-25 07:32:24,534 | INFO     | cat /etc/os-release:
[2025-10-25 09:32:53] NAME="CentOS Linux"
[2025-10-25 09:32:53] VERSION="7 (Core)"
[2025-10-25 09:32:53] ID="centos"
[2025-10-25 09:32:53] ID_LIKE="rhel fedora"
[2025-10-25 09:32:53] VERSION_ID="7"
[2025-10-25 09:32:53] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-25 09:32:53] ANSI_COLOR="0;31"
[2025-10-25 09:32:53] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-25 09:32:53] HOME_URL="https://www.centos.org/"
[2025-10-25 09:32:53] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-25 09:32:53] 
[2025-10-25 09:32:53] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-25 09:32:53] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-25 09:32:53] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-25 09:32:53] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-25 09:32:53] 
[2025-10-25 09:32:53] 2025-10-25 07:32:24,534 | INFO     | ***************************************
[2025-10-25 09:32:53] 2025-10-25 07:32:25,038 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-10-25 09:32:53] 2025-10-25 07:32:25,054 | INFO     | sufficient remaining disk space (226972663808 B)
[2025-10-25 09:32:53] 2025-10-25 07:32:25,054 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-25 09:32:53] 2025-10-25 07:32:25,055 | INFO     | current server update state: UPDATING_FINAL
[2025-10-25 09:32:53] 2025-10-25 07:32:25,055 | INFO     | update_server=False
[2025-10-25 09:32:53] 2025-10-25 07:32:25,055 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-25 09:32:53] 2025-10-25 07:32:25,055 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-10-25 09:32:53] 2025-10-25 07:32:25,055 | INFO     | found 0 job(s) in 20 queues
[2025-10-25 09:32:53] 2025-10-25 07:32:25,055 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-25 09:32:53] 2025-10-25 07:32:25,055 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-25 09:32:53] 2025-10-25 07:32:25,055 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-25 09:32:53] 2025-10-25 07:32:25,246 | INFO     | all job control threads have been joined
[2025-10-25 09:32:53] 2025-10-25 07:32:25,364 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-25 09:32:53] 2025-10-25 07:32:25,364 | INFO     | aborting loop
[2025-10-25 09:32:53] 2025-10-25 07:32:25,719 | INFO     | all data control threads have been joined
[2025-10-25 09:32:53] 2025-10-25 07:32:26,060 | INFO     | [job] retrieve thread has finished
[2025-10-25 09:32:53] 2025-10-25 07:32:26,144 | INFO     | [payload] validate_pre thread has finished
[2025-10-25 09:32:53] 2025-10-25 07:32:26,252 | INFO     | [job] control thread has finished
[2025-10-25 09:32:53] 2025-10-25 07:32:26,253 | INFO     | [payload] validate_post thread has finished
[2025-10-25 09:32:53] 2025-10-25 07:32:26,268 | INFO     | all payload control threads have been joined
[2025-10-25 09:32:53] 2025-10-25 07:32:26,360 | INFO     | [payload] failed_post thread has finished
[2025-10-25 09:32:53] 2025-10-25 07:32:26,369 | INFO     | [job] job monitor thread has finished
[2025-10-25 09:32:53] 2025-10-25 07:32:26,406 | INFO     | [data] copytool_in thread has finished
[2025-10-25 09:32:53] 2025-10-25 07:32:26,725 | INFO     | [data] control thread has finished
[2025-10-25 09:32:53] 2025-10-25 07:32:27,019 | INFO     | [payload] execute_payloads thread has finished
[2025-10-25 09:32:53] 2025-10-25 07:32:27,061 | INFO     | [data] copytool_out thread has finished
[2025-10-25 09:32:53] 2025-10-25 07:32:27,273 | INFO     | [payload] control thread has finished
[2025-10-25 09:32:53] 2025-10-25 07:32:27,447 | INFO     | [job] validate thread has finished
[2025-10-25 09:32:53] 2025-10-25 07:32:27,543 | INFO     | [job] create_data_payload thread has finished
[2025-10-25 09:32:53] 2025-10-25 07:32:27,584 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-25 09:32:53] 2025-10-25 07:32:28,019 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-25 09:32:53] 2025-10-25 07:32:29,025 | INFO     | [job] queue monitor thread has finished
[2025-10-25 09:32:53] 2025-10-25 07:32:31,591 | INFO     | [data] queue_monitor thread has finished
[2025-10-25 09:32:53] 2025-10-25 07:32:35,835 | INFO     | job.realtimelogging is not enabled
[2025-10-25 09:32:53] 2025-10-25 07:32:36,841 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-25 09:32:53] 2025-10-25 07:32:46,949 | INFO     | [monitor] cgroup control has ended
[2025-10-25 09:32:53] 2025-10-25 07:32:48,132 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140656257218368)>', '<ExcThread(monitor, started 140655514859264)>']
[2025-10-25 09:32:53] 2025-10-25 07:32:48,174 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-25 09:32:53] 2025-10-25 07:32:48,174 | INFO     | [monitor] control thread has ended
[2025-10-25 09:32:53] 2025-10-25 07:32:53,158 | INFO     | all workflow threads have been joined
[2025-10-25 09:32:53] 2025-10-25 07:32:53,158 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-25 09:32:53] 2025-10-25 07:32:53,158 | INFO     | traces error code: 0
[2025-10-25 09:32:53] 2025-10-25 07:32:53,158 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-25 09:32:53] 2025-10-25 07:32:53,227 [wrapper] ==== pilot stdout END ====
[2025-10-25 09:32:53] 2025-10-25 07:32:53,231 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-25 09:32:53] 2025-10-25 07:32:53,235 [wrapper] pilotpid: 1737285
[2025-10-25 09:32:53] 2025-10-25 07:32:53,238 [wrapper] Pilot exit status: 0
[2025-10-25 09:32:53] 2025-10-25 07:32:53,249 [wrapper] pandaids: 6855693156
[2025-10-25 09:32:53] 2025-10-25 07:32:53,269 [wrapper] cleanup supervisor_pilot 1756164 1737286
[2025-10-25 09:32:53] 2025-10-25 07:32:53,273 [wrapper] Test setup, not cleaning
[2025-10-25 09:32:53] 2025-10-25 07:32:53,277 [wrapper] apfmon messages muted
[2025-10-25 09:32:53] 2025-10-25 07:32:53,280 [wrapper] ==== wrapper stdout END ====
[2025-10-25 09:32:53] 2025-10-25 07:32:53,283 [wrapper] ==== wrapper stderr END ====
[2025-10-25 09:32:53]  *** Error codes and diagnostics ***
[2025-10-25 09:32:53]     "exeErrorCode": 0,
[2025-10-25 09:32:53]     "exeErrorDiag": "",
[2025-10-25 09:32:53]     "pilotErrorCode": 0,
[2025-10-25 09:32:53]     "pilotErrorDiag": "",
[2025-10-25 09:32:53]  *** Listing of results directory ***
[2025-10-25 09:32:53] total 440800
[2025-10-25 09:32:53] -rw-r--r-- 1 boinc boinc    557409 Oct 24 16:41 pilot3.tar.gz
[2025-10-25 09:32:53] -rwx------ 1 boinc boinc     36292 Oct 24 17:13 runpilot2-wrapper.sh
[2025-10-25 09:32:53] -rw-r--r-- 1 boinc boinc      5112 Oct 24 17:13 queuedata.json
[2025-10-25 09:32:53] -rw-r--r-- 1 boinc boinc       100 Oct 25 08:12 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-25 09:32:53] -rwxr-xr-x 1 boinc boinc      7986 Oct 25 08:12 run_atlas
[2025-10-25 09:32:53] -rw-r--r-- 1 boinc boinc       105 Oct 25 08:12 job.xml
[2025-10-25 09:32:53] -rw-r--r-- 2 boinc boinc 230080679 Oct 25 08:12 EVNT.46771634._004797.pool.root.1
[2025-10-25 09:32:53] drwxrwx--x 2 boinc boinc      4096 Oct 25 08:12 shared
[2025-10-25 09:32:53] -rw-r--r-- 2 boinc boinc    569682 Oct 25 08:12 input.tar.gz
[2025-10-25 09:32:53] -rw-r--r-- 2 boinc boinc     15120 Oct 25 08:12 start_atlas.sh
[2025-10-25 09:32:53] -rw-r--r-- 1 boinc boinc         0 Oct 25 08:12 boinc_setup_complete
[2025-10-25 09:32:53] -rw-r--r-- 1 boinc boinc      6368 Oct 25 08:12 init_data.xml
[2025-10-25 09:32:53] -rw-r--r-- 1 boinc boinc         0 Oct 25 08:12 boinc_lockfile
[2025-10-25 09:32:53] -rw-r--r-- 1 boinc boinc      2562 Oct 25 08:12 pandaJob.out
[2025-10-25 09:32:53] -rw------- 1 boinc boinc    978605 Oct 25 08:12 agis_schedconf.cvmfs.json
[2025-10-25 09:32:53] -rw------- 1 boinc boinc   1560772 Oct 25 08:12 agis_ddmendpoints.agis.ALL.json
[2025-10-25 09:32:53] drwx------ 5 boinc boinc      4096 Oct 25 08:12 pilot3
[2025-10-25 09:32:53] -rw------- 1 boinc boinc 215473660 Oct 25 09:31 HITS.46771637._120366.pool.root.1
[2025-10-25 09:32:53] -rw------- 1 boinc boinc        95 Oct 25 09:32 pilot_heartbeat.json
[2025-10-25 09:32:53] -rw-r--r-- 1 boinc boinc       529 Oct 25 09:32 boinc_task_state.xml
[2025-10-25 09:32:53] -rw------- 1 boinc boinc      1019 Oct 25 09:32 memory_monitor_summary.json
[2025-10-25 09:32:53] -rw------- 1 boinc boinc    263082 Oct 25 09:32 log.46771637._120366.job.log.tgz.1
[2025-10-25 09:32:53] -rw------- 1 boinc boinc      7761 Oct 25 09:32 heartbeat.json
[2025-10-25 09:32:53] -rw-r--r-- 1 boinc boinc      8192 Oct 25 09:32 boinc_mmap_file
[2025-10-25 09:32:53] -rw-r--r-- 1 boinc boinc        27 Oct 25 09:32 wrapper_checkpoint.txt
[2025-10-25 09:32:53] -rw------- 1 boinc boinc      4628 Oct 25 09:32 pilotlog.txt
[2025-10-25 09:32:53] -rw------- 1 boinc boinc    704320 Oct 25 09:32 log.46771637._120366.job.log.1
[2025-10-25 09:32:53] -rw------- 1 boinc boinc       357 Oct 25 09:32 output.list
[2025-10-25 09:32:53] -rw-r--r-- 1 boinc boinc       620 Oct 25 09:32 runtime_log
[2025-10-25 09:32:53] -rw------- 1 boinc boinc    983040 Oct 25 09:32 result.tar.gz
[2025-10-25 09:32:53] -rw-r--r-- 1 boinc boinc      8777 Oct 25 09:32 runtime_log.err
[2025-10-25 09:32:53] -rw------- 1 boinc boinc       658 Oct 25 09:32 pwDODmkeYW8n9Rq4apOajLDm4fhM0noT9bVof3QYDmAXlMDmGE8s0n.diag
[2025-10-25 09:32:53] -rw-r--r-- 1 boinc boinc     10527 Oct 25 09:32 stderr.txt
[2025-10-25 09:32:53] HITS file was successfully produced:
[2025-10-25 09:32:53] -rw------- 1 boinc boinc 215473660 Oct 25 09:31 shared/HITS.pool.root.1
[2025-10-25 09:32:53]  *** Contents of shared directory: ***
[2025-10-25 09:32:53] total 436660
[2025-10-25 09:32:53] -rw-r--r-- 2 boinc boinc 230080679 Oct 25 08:12 ATLAS.root_0
[2025-10-25 09:32:53] -rw-r--r-- 2 boinc boinc    569682 Oct 25 08:12 input.tar.gz
[2025-10-25 09:32:53] -rw-r--r-- 2 boinc boinc     15120 Oct 25 08:12 start_atlas.sh
[2025-10-25 09:32:53] -rw------- 1 boinc boinc 215473660 Oct 25 09:31 HITS.pool.root.1
[2025-10-25 09:32:53] -rw------- 1 boinc boinc    983040 Oct 25 09:32 result.tar.gz
09:32:54 (1733505): run_atlas exited; CPU time 18163.299714
09:32:54 (1733505): called boinc_finish(0)

</stderr_txt>
]]>

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