Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
09:09:56 (250559): wrapper (7.7.26015): starting
09:09:56 (250559): wrapper: running run_atlas (--nthreads 4)
[2025-10-25 09:09:56] Arguments: --nthreads 4
[2025-10-25 09:09:56] Threads: 4
[2025-10-25 09:09:56] Checking for CVMFS
[2025-10-25 09:09:56] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-25 09:09:56] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-25 09:09:56] Running cvmfs_config stat atlas.cern.ch
[2025-10-25 09:09:56] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-25 09:09:56] 2.9.2.0 2150638 6299 94768 152109 1 57 24913472 36864000 0 130560 0 6014626 99.991 235478 1080 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-10-25 09:09:56] CVMFS is ok
[2025-10-25 09:09:56] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-25 09:09:56] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-25 09:09:56] Further information can be found at the LHC@home message board.
[2025-10-25 09:09:56] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-25 09:09:56] Checking for apptainer binary...
[2025-10-25 09:09:56] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-25 09:09:56] Running /usr/bin/apptainer --version
[2025-10-25 09:09:56] apptainer version 1.4.1-1.1
[2025-10-25 09:09:56] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-25 09:09:56] thA315b
[2025-10-25 09:09:56] apptainer works
[2025-10-25 09:09:56] Set ATHENA_PROC_NUMBER=4
[2025-10-25 09:09:56] Set ATHENA_CORE_NUMBER=4
[2025-10-25 09:09:56] Starting ATLAS job with PandaID=6855692273
[2025-10-25 09:09:56] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-25 10:16:21]  *** The last 200 lines of the pilot log: ***
[2025-10-25 10:16:21] 2025-10-25 08:15:50,205 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-25 10:16:21] 2025-10-25 08:15:50,206 | INFO     | did not find any defunct processes belonging to 260896
[2025-10-25 10:16:21] 2025-10-25 08:15:50,207 | INFO     | did not find any defunct processes belonging to 260896
[2025-10-25 10:16:21] 2025-10-25 08:15:50,207 | INFO     | ready for new job
[2025-10-25 10:16:21] 2025-10-25 08:15:50,207 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-25 10:16:21] 2025-10-25 08:15:50,208 | INFO     | ***************************************
[2025-10-25 10:16:21] 2025-10-25 08:15:50,208 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-25 10:16:21] 2025-10-25 08:15:50,208 | INFO     | ***************************************
[2025-10-25 10:16:21] 2025-10-25 08:15:50,208 | INFO     | 
[2025-10-25 10:16:21] 2025-10-25 08:15:50,209 | INFO     | architecture information:
[2025-10-25 10:16:21] 2025-10-25 08:15:50,209 | INFO     | executing command: cat /etc/os-release
[2025-10-25 10:16:21] 2025-10-25 08:15:50,219 | INFO     | cat /etc/os-release:
[2025-10-25 10:16:21] NAME="CentOS Linux"
[2025-10-25 10:16:21] VERSION="7 (Core)"
[2025-10-25 10:16:21] ID="centos"
[2025-10-25 10:16:21] ID_LIKE="rhel fedora"
[2025-10-25 10:16:21] VERSION_ID="7"
[2025-10-25 10:16:21] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-25 10:16:21] ANSI_COLOR="0;31"
[2025-10-25 10:16:21] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-25 10:16:21] HOME_URL="https://www.centos.org/"
[2025-10-25 10:16:21] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-25 10:16:21] 
[2025-10-25 10:16:21] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-25 10:16:21] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-25 10:16:21] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-25 10:16:21] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-25 10:16:21] 
[2025-10-25 10:16:21] 2025-10-25 08:15:50,219 | INFO     | ***************************************
[2025-10-25 10:16:21] 2025-10-25 08:15:50,722 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-10-25 10:16:21] 2025-10-25 08:15:50,736 | INFO     | sufficient remaining disk space (334080507904 B)
[2025-10-25 10:16:21] 2025-10-25 08:15:50,736 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-25 10:16:21] 2025-10-25 08:15:50,736 | INFO     | current server update state: UPDATING_FINAL
[2025-10-25 10:16:21] 2025-10-25 08:15:50,736 | INFO     | update_server=False
[2025-10-25 10:16:21] 2025-10-25 08:15:50,736 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-25 10:16:21] 2025-10-25 08:15:50,736 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-25 10:16:21] 2025-10-25 08:15:50,863 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-25 10:16:21] 2025-10-25 08:15:50,890 | INFO     | all payload control threads have been joined
[2025-10-25 10:16:21] 2025-10-25 08:15:51,021 | INFO     | all data control threads have been joined
[2025-10-25 10:16:21] 2025-10-25 08:15:51,086 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-10-25 10:16:21] 2025-10-25 08:15:51,086 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-10-25 10:16:21] 2025-10-25 08:15:51,086 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-25 10:16:21] 2025-10-25 08:15:51,086 | INFO     | will abort loop
[2025-10-25 10:16:21] 2025-10-25 08:15:51,612 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-25 10:16:21] 2025-10-25 08:15:51,742 | INFO     | [job] queue monitor thread has finished
[2025-10-25 10:16:21] 2025-10-25 08:15:51,742 | INFO     | [job] retrieve thread has finished
[2025-10-25 10:16:21] 2025-10-25 08:15:51,775 | INFO     | [payload] failed_post thread has finished
[2025-10-25 10:16:21] 2025-10-25 08:15:51,896 | INFO     | [payload] control thread has finished
[2025-10-25 10:16:21] 2025-10-25 08:15:52,027 | INFO     | [data] control thread has finished
[2025-10-25 10:16:21] 2025-10-25 08:15:52,092 | INFO     | [job] job monitor thread has finished
[2025-10-25 10:16:21] 2025-10-25 08:15:52,313 | INFO     | [payload] validate_post thread has finished
[2025-10-25 10:16:21] 2025-10-25 08:15:52,429 | INFO     | all job control threads have been joined
[2025-10-25 10:16:21] 2025-10-25 08:15:52,523 | INFO     | [data] copytool_in thread has finished
[2025-10-25 10:16:21] 2025-10-25 08:15:52,731 | INFO     | [job] validate thread has finished
[2025-10-25 10:16:21] 2025-10-25 08:15:52,807 | INFO     | [job] create_data_payload thread has finished
[2025-10-25 10:16:21] 2025-10-25 08:15:52,877 | INFO     | [payload] validate_pre thread has finished
[2025-10-25 10:16:21] 2025-10-25 08:15:52,953 | INFO     | [payload] execute_payloads thread has finished
[2025-10-25 10:16:21] 2025-10-25 08:15:53,435 | INFO     | [job] control thread has finished
[2025-10-25 10:16:21] 2025-10-25 08:15:53,618 | INFO     | [data] copytool_out thread has finished
[2025-10-25 10:16:21] 2025-10-25 08:15:54,870 | INFO     | [data] queue_monitor thread has finished
[2025-10-25 10:16:21] 2025-10-25 08:16:01,408 | INFO     | job.realtimelogging is not enabled
[2025-10-25 10:16:21] 2025-10-25 08:16:02,413 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-25 10:16:21] 2025-10-25 08:16:07,795 | INFO     | [monitor] cgroup control has ended
[2025-10-25 10:16:21] 2025-10-25 08:16:08,277 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140576490952512)>', '<ExcThread(monitor, started 140575974070016)>']
[2025-10-25 10:16:21] 2025-10-25 08:16:13,303 | INFO     | all workflow threads have been joined
[2025-10-25 10:16:21] 2025-10-25 08:16:13,303 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-25 10:16:21] 2025-10-25 08:16:13,304 | INFO     | traces error code: 0
[2025-10-25 10:16:21] 2025-10-25 08:16:13,305 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-25 10:16:21] 2025-10-25 08:16:20,963 | INFO     | PID=254337 has CPU usage=1.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-10-25 10:16:21] 2025-10-25 08:16:20,963 | INFO     | found 0 job(s) in 20 queues
[2025-10-25 10:16:21] 2025-10-25 08:16:20,963 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-25 10:16:21] 2025-10-25 08:16:20,963 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-25 10:16:21] 2025-10-25 08:16:20,963 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-25 10:16:21] 2025-10-25 08:16:20,963 | INFO     | [monitor] control thread has ended
[2025-10-25 10:16:21] 2025-10-25 08:16:21,013 [wrapper] ==== pilot stdout END ====
[2025-10-25 10:16:21] 2025-10-25 08:16:21,016 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-25 10:16:21] 2025-10-25 08:16:21,019 [wrapper] pilotpid: 254337
[2025-10-25 10:16:21] 2025-10-25 08:16:21,022 [wrapper] Pilot exit status: 0
[2025-10-25 10:16:21] 2025-10-25 08:16:21,030 [wrapper] pandaids: 6855692273
[2025-10-25 10:16:21] 2025-10-25 08:16:21,048 [wrapper] cleanup supervisor_pilot  270280 254338
[2025-10-25 10:16:21] 2025-10-25 08:16:21,050 [wrapper] Test setup, not cleaning
[2025-10-25 10:16:21] 2025-10-25 08:16:21,053 [wrapper] apfmon messages muted
[2025-10-25 10:16:21] 2025-10-25 08:16:21,055 [wrapper] ==== wrapper stdout END ====
[2025-10-25 10:16:21] 2025-10-25 08:16:21,058 [wrapper] ==== wrapper stderr END ====
[2025-10-25 10:16:21]  *** Error codes and diagnostics ***
[2025-10-25 10:16:21]     "exeErrorCode": 0,
[2025-10-25 10:16:21]     "exeErrorDiag": "",
[2025-10-25 10:16:21]     "pilotErrorCode": 0,
[2025-10-25 10:16:21]     "pilotErrorDiag": "",
[2025-10-25 10:16:21]  *** Listing of results directory ***
[2025-10-25 10:16:21] total 427960
[2025-10-25 10:16:21] -rw-r--r-- 1 boinc boinc    557409 Oct 24 16:41 pilot3.tar.gz
[2025-10-25 10:16:21] -rw-r--r-- 1 boinc boinc      5112 Oct 24 16:43 queuedata.json
[2025-10-25 10:16:21] -rwx------ 1 boinc boinc     36292 Oct 24 16:44 runpilot2-wrapper.sh
[2025-10-25 10:16:21] -rw-r--r-- 1 boinc boinc       100 Oct 25 09:09 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-25 10:16:21] -rwxr-xr-x 1 boinc boinc      7986 Oct 25 09:09 run_atlas
[2025-10-25 10:16:21] -rw-r--r-- 1 boinc boinc       105 Oct 25 09:09 job.xml
[2025-10-25 10:16:21] -rw-r--r-- 2 boinc boinc 230258077 Oct 25 09:09 EVNT.46771634._004783.pool.root.1
[2025-10-25 10:16:21] -rw-r--r-- 2 boinc boinc    569686 Oct 25 09:09 input.tar.gz
[2025-10-25 10:16:21] -rw-r--r-- 2 boinc boinc     15120 Oct 25 09:09 start_atlas.sh
[2025-10-25 10:16:21] drwxrwx--x 2 boinc boinc      4096 Oct 25 09:09 shared
[2025-10-25 10:16:21] -rw-r--r-- 1 boinc boinc         0 Oct 25 09:09 boinc_setup_complete
[2025-10-25 10:16:21] -rw-r--r-- 1 boinc boinc      6443 Oct 25 09:09 init_data.xml
[2025-10-25 10:16:21] -rw-r--r-- 1 boinc boinc         0 Oct 25 09:09 boinc_lockfile
[2025-10-25 10:16:21] -rw-r--r-- 1 boinc boinc      2562 Oct 25 09:09 pandaJob.out
[2025-10-25 10:16:21] -rw------- 1 boinc boinc    978613 Oct 25 09:10 agis_schedconf.cvmfs.json
[2025-10-25 10:16:21] -rw------- 1 boinc boinc   1560772 Oct 25 09:10 agis_ddmendpoints.agis.ALL.json
[2025-10-25 10:16:21] drwx------ 5 boinc boinc      4096 Oct 25 09:10 pilot3
[2025-10-25 10:16:21] -rw------- 1 boinc boinc        95 Oct 25 10:15 pilot_heartbeat.json
[2025-10-25 10:16:21] -rw------- 1 boinc boinc 202400061 Oct 25 10:15 HITS.46771637._120013.pool.root.1
[2025-10-25 10:16:21] -rw-r--r-- 1 boinc boinc       529 Oct 25 10:15 boinc_task_state.xml
[2025-10-25 10:16:21] -rw------- 1 boinc boinc      1018 Oct 25 10:15 memory_monitor_summary.json
[2025-10-25 10:16:21] -rw------- 1 boinc boinc    246690 Oct 25 10:15 log.46771637._120013.job.log.tgz.1
[2025-10-25 10:16:21] -rw------- 1 boinc boinc      7751 Oct 25 10:15 heartbeat.json
[2025-10-25 10:16:21] -rw-r--r-- 1 boinc boinc        27 Oct 25 10:16 wrapper_checkpoint.txt
[2025-10-25 10:16:21] -rw-r--r-- 1 boinc boinc      8192 Oct 25 10:16 boinc_mmap_file
[2025-10-25 10:16:21] -rw------- 1 boinc boinc       746 Oct 25 10:16 pilotlog.txt
[2025-10-25 10:16:21] -rw------- 1 boinc boinc    590079 Oct 25 10:16 log.46771637._120013.job.log.1
[2025-10-25 10:16:21] -rw------- 1 boinc boinc       357 Oct 25 10:16 output.list
[2025-10-25 10:16:21] -rw-r--r-- 1 boinc boinc       620 Oct 25 10:16 runtime_log
[2025-10-25 10:16:21] -rw------- 1 boinc boinc    860160 Oct 25 10:16 result.tar.gz
[2025-10-25 10:16:21] -rw------- 1 boinc boinc       659 Oct 25 10:16 uLcNDmrCYW8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmE5BODmIP7IPo.diag
[2025-10-25 10:16:21] -rw-r--r-- 1 boinc boinc      8782 Oct 25 10:16 runtime_log.err
[2025-10-25 10:16:21] -rw-r--r-- 1 boinc boinc     10181 Oct 25 10:16 stderr.txt
[2025-10-25 10:16:21] HITS file was successfully produced:
[2025-10-25 10:16:21] -rw------- 1 boinc boinc 202400061 Oct 25 10:15 shared/HITS.pool.root.1
[2025-10-25 10:16:21]  *** Contents of shared directory: ***
[2025-10-25 10:16:21] total 423948
[2025-10-25 10:16:21] -rw-r--r-- 2 boinc boinc 230258077 Oct 25 09:09 ATLAS.root_0
[2025-10-25 10:16:21] -rw-r--r-- 2 boinc boinc    569686 Oct 25 09:09 input.tar.gz
[2025-10-25 10:16:21] -rw-r--r-- 2 boinc boinc     15120 Oct 25 09:09 start_atlas.sh
[2025-10-25 10:16:21] -rw------- 1 boinc boinc 202400061 Oct 25 10:15 HITS.pool.root.1
[2025-10-25 10:16:21] -rw------- 1 boinc boinc    860160 Oct 25 10:16 result.tar.gz
10:16:23 (250559): run_atlas exited; CPU time 14853.780551
10:16:23 (250559): called boinc_finish(0)

</stderr_txt>
]]>

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