Stderr output

<core_client_version>8.3.0</core_client_version>
<![CDATA[
<stderr_txt>
22:21:43 (2300): wrapper (7.7.26015): starting
22:21:43 (2300): wrapper: running run_atlas (--nthreads 8)
[2025-10-24 22:21:43] Arguments: --nthreads 8
[2025-10-24 22:21:43] Threads: 8
[2025-10-24 22:21:43] Checking for CVMFS
[2025-10-24 22:21:43] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-24 22:21:44] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-24 22:21:44] Running cvmfs_config stat atlas.cern.ch
[2025-10-24 22:21:44] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-24 22:21:44] 2.11.0.0 4029 18786 61064 152094 2 188 4014091 4096000 4807 130560 0 2354353 99.692 1300822 543 http://cvmfs-stratum-one.cern.ch/cvmfs/atlas.cern.ch http://141.99.253.245:3128 1
[2025-10-24 22:21:44] CVMFS is ok
[2025-10-24 22:21:44] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-24 22:21:44] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-24 22:21:44] Further information can be found at the LHC@home message board.
[2025-10-24 22:21:44] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-24 22:21:44] Checking for apptainer binary...
[2025-10-24 22:21:44] /usr/bin/which: no apptainer in (/opt/ohpc/pub/libs/singularity/3.7.1/bin:/cm/shared/apps/slurm/current/sbin:/cm/shared/apps/slurm/current/bin:/home/mf493845/.local/bin:/home/mf493845/bin:/usr/local/bin:/usr/bin:/usr/local/sbin:/usr/sbin)
[2025-10-24 22:21:44] apptainer is not installed, using version from CVMFS
[2025-10-24 22:21:44] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-24 22:21:44] WARNING: Environment variable TMPDIR already has value [/tmp/job_10721323/atlas/pilot/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment hpc-node235
[2025-10-24 22:21:44] apptainer works
[2025-10-24 22:21:44] Set ATHENA_PROC_NUMBER=8
[2025-10-24 22:21:44] Set ATHENA_CORE_NUMBER=8
[2025-10-24 22:21:44] Starting ATLAS job with PandaID=6853166610
[2025-10-24 22:21:44] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/tmp/job_10721323/atlas/pilot/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-24 23:14:00]  *** The last 200 lines of the pilot log: ***
[2025-10-24 23:14:00]  replicas=None
[2025-10-24 23:14:00]  scope=mc23_13p6TeV
[2025-10-24 23:14:00]  status=None
[2025-10-24 23:14:00]  status_code=0
[2025-10-24 23:14:00]  storage_token=
[2025-10-24 23:14:00]  surl=/tmp/job_10721323/atlas/pilot/slots/0/PanDA_Pilot-6853166610/log.46771637._073888.job.log.tgz.1
[2025-10-24 23:14:00]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/f1/36/log.46771637._073888.job.log.tgz.1
[2025-10-24 23:14:00]  workdir=None
[2025-10-24 23:14:00] ]
[2025-10-24 23:14:00] 2025-10-24 21:12:57,946 | INFO     | transferring file log.46771637._073888.job.log.tgz.1 from /tmp/job_10721323/atlas/pilot/slots/0/PanDA_Pilot-6853166610/log.46771637._073888.job.log.tgz.1 to /tmp/j
[2025-10-24 23:14:00] 2025-10-24 21:12:57,946 | INFO     | executing command: /usr/bin/env mv /tmp/job_10721323/atlas/pilot/slots/0/PanDA_Pilot-6853166610/log.46771637._073888.job.log.tgz.1 /tmp/job_10721323/atlas/pilot/sl
[2025-10-24 23:14:00] 2025-10-24 21:12:57,954 | INFO     | adding to output.list: log.46771637._073888.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/f1/36/log.46771637._073888.job.log.tg
[2025-10-24 23:14:00] 2025-10-24 21:12:57,954 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-10-24 23:14:00] 2025-10-24 21:12:57,954 | INFO     | summary of transferred files:
[2025-10-24 23:14:00] 2025-10-24 21:12:57,954 | INFO     |  -- lfn=log.46771637._073888.job.log.tgz.1, status_code=0, status=transferred
[2025-10-24 23:14:00] 2025-10-24 21:12:57,954 | INFO     | stage-out finished correctly
[2025-10-24 23:14:00] 2025-10-24 21:12:59,698 | INFO     | time since job start (3070s) is within the limit (172800.0s)
[2025-10-24 23:14:00] 2025-10-24 21:12:59,850 | INFO     | monitor loop #228: job 0:6853166610 is in state 'finished'
[2025-10-24 23:14:00] 2025-10-24 21:12:59,850 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-24 23:14:00] 2025-10-24 21:13:01,192 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-10-24 23:14:00] 2025-10-24 21:13:01,704 | INFO     | time since job start (3072s) is within the limit (172800.0s)
[2025-10-24 23:14:00] 2025-10-24 21:13:02,353 | INFO     | monitor loop #229: job 0:6853166610 is in state 'finished'
[2025-10-24 23:14:00] 2025-10-24 21:13:02,353 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-24 23:14:00] 2025-10-24 21:13:02,993 | INFO     | job 6853166610 has state=finished
[2025-10-24 23:14:00] 2025-10-24 21:13:02,993 | INFO     | preparing for final server update for job 6853166610 in state='finished'
[2025-10-24 23:14:00] 2025-10-24 21:13:02,993 | INFO     | this job has now completed (state=finished)
[2025-10-24 23:14:00] 2025-10-24 21:13:02,993 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-10-24 23:14:00] 2025-10-24 21:13:02,993 | INFO     | log transfer has been attempted: DONE
[2025-10-24 23:14:00] 2025-10-24 21:13:02,993 | INFO     | job 6853166610 has finished - writing final server update
[2025-10-24 23:14:00] 2025-10-24 21:13:02,993 | INFO     | total number of processed events: 400 (read)
[2025-10-24 23:14:00] 2025-10-24 21:13:02,994 | INFO     | executing command: lscpu
[2025-10-24 23:14:00] 2025-10-24 21:13:03,024 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-10-24 23:14:00] 2025-10-24 21:13:03,709 | INFO     | time since job start (3074s) is within the limit (172800.0s)
[2025-10-24 23:14:00] 2025-10-24 21:13:04,856 | INFO     | monitor loop #230: job 0:6853166610 is in state 'finished'
[2025-10-24 23:14:00] 2025-10-24 21:13:04,856 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-24 23:14:00] 2025-10-24 21:13:04,897 | INFO     | CPU arch script returned: x86-64-v3
[2025-10-24 23:14:00] 2025-10-24 21:13:04,901 | INFO     | found 64 cores (32 cores per socket, 2 sockets) , CPU MHz: 2692.1168593749994
[2025-10-24 23:14:00] 2025-10-24 21:13:04,906 | INFO     | using path: /tmp/job_10721323/atlas/pilot/slots/0/PanDA_Pilot-6853166610/memory_monitor_summary.json (trf name=prmon)
[2025-10-24 23:14:00] 2025-10-24 21:13:04,906 | INFO     | extracted standard info from prmon json
[2025-10-24 23:14:00] 2025-10-24 21:13:04,906 | INFO     | extracted standard memory fields from prmon json
[2025-10-24 23:14:00] 2025-10-24 21:13:04,906 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-24 23:14:00] 2025-10-24 21:13:04,907 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-24 23:14:00] 2025-10-24 21:13:04,907 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-24 23:14:00] 2025-10-24 21:13:04,907 | INFO     | fitting pss+swap vs Time
[2025-10-24 23:14:00] 2025-10-24 21:13:04,907 | INFO     | sum of square deviations: 24640462.0
[2025-10-24 23:14:00] 2025-10-24 21:13:04,908 | INFO     | sum of deviations: 273735975.0
[2025-10-24 23:14:00] 2025-10-24 21:13:04,908 | INFO     | mean x: 1761338913.0
[2025-10-24 23:14:00] 2025-10-24 21:13:04,908 | INFO     | mean y: 2569786.604651163
[2025-10-24 23:14:00] 2025-10-24 21:13:04,908 | INFO     | -- intersect: -19564507513.143024
[2025-10-24 23:14:00] 2025-10-24 21:13:04,908 | INFO     | intersect: -19564507513.143024
[2025-10-24 23:14:00] 2025-10-24 21:13:04,908 | INFO     | chi2: 0.00010107648355326123
[2025-10-24 23:14:00] 2025-10-24 21:13:04,908 | INFO     | -- intersect: -19564507513.143024
[2025-10-24 23:14:00] 2025-10-24 21:13:04,908 | INFO     | current memory leak: 11.11 B/s (using 43 data points, chi2=0.00)
[2025-10-24 23:14:00] 2025-10-24 21:13:04,908 | INFO     | could have reported an average CPU frequency of 2656 MHz (5 samples)
[2025-10-24 23:14:00] 2025-10-24 21:13:04,908 | INFO     | ..............................
[2025-10-24 23:14:00] 2025-10-24 21:13:04,908 | INFO     | . Timing measurements:
[2025-10-24 23:14:00] 2025-10-24 21:13:04,908 | INFO     | . get job = 0 s
[2025-10-24 23:14:00] 2025-10-24 21:13:04,908 | INFO     | . initial setup = 1 s
[2025-10-24 23:14:00] 2025-10-24 21:13:04,908 | INFO     | . payload setup = 2 s
[2025-10-24 23:14:00] 2025-10-24 21:13:04,908 | INFO     | . stage-in = 0 s
[2025-10-24 23:14:00] 2025-10-24 21:13:04,908 | INFO     | . payload execution = 3049 s
[2025-10-24 23:14:00] 2025-10-24 21:13:04,908 | INFO     | . stage-out = 0 s
[2025-10-24 23:14:00] 2025-10-24 21:13:04,908 | INFO     | . log creation = 0 s
[2025-10-24 23:14:00] 2025-10-24 21:13:04,908 | INFO     | ..............................
[2025-10-24 23:14:00] 2025-10-24 21:13:04,957 | INFO     | 
[2025-10-24 23:14:00] 2025-10-24 21:13:04,958 | INFO     | job summary report
[2025-10-24 23:14:00] 2025-10-24 21:13:04,958 | INFO     | --------------------------------------------------
[2025-10-24 23:14:00] 2025-10-24 21:13:04,958 | INFO     | PanDA job id: 6853166610
[2025-10-24 23:14:00] 2025-10-24 21:13:04,958 | INFO     | task id: 46771637
[2025-10-24 23:14:00] 2025-10-24 21:13:04,958 | INFO     | errors: (none)
[2025-10-24 23:14:00] 2025-10-24 21:13:04,958 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-24 23:14:00] 2025-10-24 21:13:04,958 | INFO     | pilot state: finished 
[2025-10-24 23:14:00] 2025-10-24 21:13:04,958 | INFO     | transexitcode: 0
[2025-10-24 23:14:00] 2025-10-24 21:13:04,958 | INFO     | exeerrorcode: 0
[2025-10-24 23:14:00] 2025-10-24 21:13:04,958 | INFO     | exeerrordiag: 
[2025-10-24 23:14:00] 2025-10-24 21:13:04,958 | INFO     | exitcode: 0
[2025-10-24 23:14:00] 2025-10-24 21:13:04,958 | INFO     | exitmsg: OK
[2025-10-24 23:14:00] 2025-10-24 21:13:04,958 | INFO     | cpuconsumptiontime: 22298 s
[2025-10-24 23:14:00] 2025-10-24 21:13:04,958 | INFO     | nevents: 400
[2025-10-24 23:14:00] 2025-10-24 21:13:04,958 | INFO     | neventsw: 0
[2025-10-24 23:14:00] 2025-10-24 21:13:04,958 | INFO     | pid: 22285
[2025-10-24 23:14:00] 2025-10-24 21:13:04,958 | INFO     | pgrp: 22285
[2025-10-24 23:14:00] 2025-10-24 21:13:04,958 | INFO     | corecount: 8
[2025-10-24 23:14:00] 2025-10-24 21:13:04,958 | INFO     | event service: False
[2025-10-24 23:14:00] 2025-10-24 21:13:04,958 | INFO     | sizes: {0: 2349057, 2: 2349319, 11: 2349347, 3055: 2374897, 3056: 2383980, 3060: 2383980, 3063: 2384334}
[2025-10-24 23:14:00] 2025-10-24 21:13:04,958 | INFO     | --------------------------------------------------
[2025-10-24 23:14:00] 2025-10-24 21:13:04,958 | INFO     | 
[2025-10-24 23:14:00] 2025-10-24 21:13:04,958 | INFO     | executing command: ls -lF /tmp/job_10721323/atlas/pilot/slots/0
[2025-10-24 23:14:00] 2025-10-24 21:13:04,968 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-24 23:14:00] 2025-10-24 21:13:04,968 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-24 23:14:00] 2025-10-24 21:13:04,968 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-24 23:14:00] 2025-10-24 21:13:04,968 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-24 23:14:00] 2025-10-24 21:13:04,968 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-24 23:14:00] 2025-10-24 21:13:04,968 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-24 23:14:00] 2025-10-24 21:13:04,968 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-24 23:14:00] 2025-10-24 21:13:04,968 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-24 23:14:00] 2025-10-24 21:13:04,968 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-24 23:14:00] 2025-10-24 21:13:04,968 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-24 23:14:00] 2025-10-24 21:13:04,968 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-24 23:14:00] 2025-10-24 21:13:04,968 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-24 23:14:00] 2025-10-24 21:13:04,968 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-24 23:14:00] 2025-10-24 21:13:04,968 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-24 23:14:00] 2025-10-24 21:13:04,968 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-24 23:14:00] 2025-10-24 21:13:04,968 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-24 23:14:00] 2025-10-24 21:13:04,968 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-24 23:14:00] 2025-10-24 21:13:04,968 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-24 23:14:00] 2025-10-24 21:13:04,969 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-24 23:14:00] 2025-10-24 21:13:04,969 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-24 23:14:00] 2025-10-24 21:13:04,969 | INFO     | job 6853166610 has completed (purged errors)
[2025-10-24 23:14:00] 2025-10-24 21:13:04,969 | INFO     | overall cleanup function is called
[2025-10-24 23:14:00] 2025-10-24 21:13:05,974 | INFO     | --- collectZombieJob: --- 10, [22285]
[2025-10-24 23:14:00] 2025-10-24 21:13:05,975 | INFO     | zombie collector waiting for pid 22285
[2025-10-24 23:14:00] 2025-10-24 21:13:05,975 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-24 23:14:00] 2025-10-24 21:13:05,975 | INFO     | collected zombie processes
[2025-10-24 23:14:00] 2025-10-24 21:13:05,975 | INFO     | will attempt to kill all subprocesses of pid=22285
[2025-10-24 23:14:00] 2025-10-24 21:13:06,085 | INFO     | process IDs to be killed: [22285] (in reverse order)
[2025-10-24 23:14:00] 2025-10-24 21:13:06,127 | WARNING  | found no corresponding commands to process id(s)
[2025-10-24 23:14:00] 2025-10-24 21:13:06,127 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-24 23:14:00] 2025-10-24 21:13:06,131 | INFO     | did not find any defunct processes belonging to 22285
[2025-10-24 23:14:00] 2025-10-24 21:13:06,135 | INFO     | did not find any defunct processes belonging to 22285
[2025-10-24 23:14:00] 2025-10-24 21:13:06,135 | INFO     | ready for new job
[2025-10-24 23:14:00] 2025-10-24 21:13:06,135 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-24 23:14:00] 2025-10-24 21:13:06,135 | INFO     | ***************************************
[2025-10-24 23:14:00] 2025-10-24 21:13:06,135 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-24 23:14:00] 2025-10-24 21:13:06,135 | INFO     | ***************************************
[2025-10-24 23:14:00] 2025-10-24 21:13:06,136 | INFO     | 
[2025-10-24 23:14:00] 2025-10-24 21:13:06,148 | INFO     | architecture information:
[2025-10-24 23:14:00] 2025-10-24 21:13:06,149 | INFO     | executing command: cat /etc/os-release
[2025-10-24 23:14:00] 2025-10-24 21:13:06,155 | INFO     | cat /etc/os-release:
[2025-10-24 23:14:00] NAME="CentOS Linux"
[2025-10-24 23:14:00] VERSION="7 (Core)"
[2025-10-24 23:14:00] ID="centos"
[2025-10-24 23:14:00] ID_LIKE="rhel fedora"
[2025-10-24 23:14:00] VERSION_ID="7"
[2025-10-24 23:14:00] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-24 23:14:00] ANSI_COLOR="0;31"
[2025-10-24 23:14:00] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-24 23:14:00] HOME_URL="https://www.centos.org/"
[2025-10-24 23:14:00] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-24 23:14:00] 
[2025-10-24 23:14:00] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-24 23:14:00] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-24 23:14:00] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-24 23:14:00] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-24 23:14:00] 
[2025-10-24 23:14:00] 2025-10-24 21:13:06,155 | INFO     | ***************************************
[2025-10-24 23:14:00] 2025-10-24 21:13:06,658 | INFO     | executing command: df -mP /tmp/job_10721323/atlas/pilot/slots/0
[2025-10-24 23:14:00] 2025-10-24 21:13:06,664 | INFO     | sufficient remaining disk space (222356832256 B)
[2025-10-24 23:14:00] 2025-10-24 21:13:06,664 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-24 23:14:00] 2025-10-24 21:13:06,664 | INFO     | current server update state: UPDATING_FINAL
[2025-10-24 23:14:00] 2025-10-24 21:13:06,664 | INFO     | update_server=False
[2025-10-24 23:14:00] 2025-10-24 21:13:06,664 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-24 23:14:00] 2025-10-24 21:13:06,664 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-24 23:14:00] 2025-10-24 21:13:06,664 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-24 23:14:00] 2025-10-24 21:13:06,664 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-24 23:14:00] 2025-10-24 21:13:06,664 | INFO     | aborting loop
[2025-10-24 23:14:00] 2025-10-24 21:13:07,247 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-24 23:14:00] 2025-10-24 21:13:07,346 | INFO     | all payload control threads have been joined
[2025-10-24 23:14:00] 2025-10-24 21:13:07,362 | INFO     | all data control threads have been joined
[2025-10-24 23:14:00] 2025-10-24 21:13:07,669 | INFO     | [job] retrieve thread has finished
[2025-10-24 23:14:00] 2025-10-24 21:13:07,669 | INFO     | [job] queue monitor thread has finished
[2025-10-24 23:14:00] 2025-10-24 21:13:07,670 | INFO     | [job] job monitor thread has finished
[2025-10-24 23:14:00] 2025-10-24 21:13:08,201 | INFO     | [payload] validate_post thread has finished
[2025-10-24 23:14:00] 2025-10-24 21:13:08,244 | INFO     | all job control threads have been joined
[2025-10-24 23:14:00] 2025-10-24 21:13:08,351 | INFO     | [payload] control thread has finished
[2025-10-24 23:14:00] 2025-10-24 21:13:08,368 | INFO     | [data] control thread has finished
[2025-10-24 23:14:00] 2025-10-24 21:13:08,463 | INFO     | [payload] validate_pre thread has finished
[2025-10-24 23:14:00] 2025-10-24 21:13:08,468 | INFO     | [job] create_data_payload thread has finished
[2025-10-24 23:14:00] 2025-10-24 21:13:08,471 | INFO     | [job] validate thread has finished
[2025-10-24 23:14:00] 2025-10-24 21:13:08,519 | INFO     | [payload] execute_payloads thread has finished
[2025-10-24 23:14:00] 2025-10-24 21:13:08,669 | INFO     | [data] copytool_out thread has finished
[2025-10-24 23:14:00] 2025-10-24 21:13:08,719 | INFO     | [data] copytool_in thread has finished
[2025-10-24 23:14:00] 2025-10-24 21:13:09,249 | INFO     | [job] control thread has finished
[2025-10-24 23:14:00] 2025-10-24 21:13:09,259 | INFO     | [payload] failed_post thread has finished
[2025-10-24 23:14:00] 2025-10-24 21:13:11,253 | INFO     | [data] queue_monitor thread has finished
[2025-10-24 23:14:00] 2025-10-24 21:13:16,787 | INFO     | job.realtimelogging is not enabled
[2025-10-24 23:14:00] 2025-10-24 21:13:17,792 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-24 23:14:00] 2025-10-24 21:13:36,900 | INFO     | PID=8406 has CPU usage=2.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2025-10-24 23:14:00] 2025-10-24 21:13:36,900 | INFO     | .. there are 7 such processes running
[2025-10-24 23:14:00] 2025-10-24 21:13:36,900 | INFO     | found 0 job(s) in 20 queues
[2025-10-24 23:14:00] 2025-10-24 21:13:36,900 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-24 23:14:00] 2025-10-24 21:13:36,900 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-24 23:14:00] 2025-10-24 21:13:53,673 | INFO     | [monitor] cgroup control has ended
[2025-10-24 23:14:00] 2025-10-24 21:13:55,685 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 23456247945024)>', '<ExcThread(monitor, started 23456062568192)>']
[2025-10-24 23:14:00] 2025-10-24 21:13:55,996 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-24 23:14:00] 2025-10-24 21:13:55,996 | INFO     | [monitor] control thread has ended
[2025-10-24 23:14:00] 2025-10-24 21:14:00,710 | INFO     | all workflow threads have been joined
[2025-10-24 23:14:00] 2025-10-24 21:14:00,710 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-24 23:14:00] 2025-10-24 21:14:00,710 | INFO     | traces error code: 0
[2025-10-24 23:14:00] 2025-10-24 21:14:00,710 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-24 23:14:00] 2025-10-24 21:14:00,763 [wrapper] ==== pilot stdout END ====
[2025-10-24 23:14:00] 2025-10-24 21:14:00,764 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-24 23:14:00] 2025-10-24 21:14:00,765 [wrapper] pilotpid: 8406
[2025-10-24 23:14:00] 2025-10-24 21:14:00,765 [wrapper] Pilot exit status: 0
[2025-10-24 23:14:00] 2025-10-24 21:14:00,769 [wrapper] pandaids: 6853166610
[2025-10-24 23:14:00] 2025-10-24 21:14:00,790 [wrapper] cleanup supervisor_pilot 30772 8407
[2025-10-24 23:14:00] 2025-10-24 21:14:00,791 [wrapper] Test setup, not cleaning
[2025-10-24 23:14:00] 2025-10-24 21:14:00,792 [wrapper] apfmon messages muted
[2025-10-24 23:14:00] 2025-10-24 21:14:00,793 [wrapper] ==== wrapper stdout END ====
[2025-10-24 23:14:00] 2025-10-24 21:14:00,794 [wrapper] ==== wrapper stderr END ====
[2025-10-24 23:14:00]  *** Error codes and diagnostics ***
[2025-10-24 23:14:00]     "exeErrorCode": 0,
[2025-10-24 23:14:00]     "exeErrorDiag": "",
[2025-10-24 23:14:00]     "pilotErrorCode": 0,
[2025-10-24 23:14:00]     "pilotErrorDiag": "",
[2025-10-24 23:14:00]  *** Listing of results directory ***
[2025-10-24 23:14:00] total 433136
[2025-10-24 23:14:00] -rw------- 1 mf493845 unix-user    557409 Oct 21 21:32 pilot3.tar.gz
[2025-10-24 23:14:00] -rwx------ 1 mf493845 unix-user     36292 Oct 21 22:23 runpilot2-wrapper.sh
[2025-10-24 23:14:00] -rw------- 1 mf493845 unix-user      5112 Oct 21 22:23 queuedata.json
[2025-10-24 23:14:00] -rw------- 1 mf493845 unix-user       100 Oct 24 21:23 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-24 23:14:00] -rwxr-xr-x 1 mf493845 unix-user      7986 Oct 24 21:23 run_atlas
[2025-10-24 23:14:00] -rw------- 1 mf493845 unix-user       105 Oct 24 21:23 job.xml
[2025-10-24 23:14:00] -rw-r--r-- 2 mf493845 unix-user 229839464 Oct 24 22:21 EVNT.46771634._002938.pool.root.1
[2025-10-24 23:14:00] -rw-r--r-- 2 mf493845 unix-user     15120 Oct 24 22:21 start_atlas.sh
[2025-10-24 23:14:00] drwxrwx--x 2 mf493845 unix-user       100 Oct 24 22:21 shared
[2025-10-24 23:14:00] -rw-r--r-- 2 mf493845 unix-user    569678 Oct 24 22:21 input.tar.gz
[2025-10-24 23:14:00] -rw------- 1 mf493845 unix-user      6393 Oct 24 22:21 init_data.xml
[2025-10-24 23:14:00] -rw------- 1 mf493845 unix-user         0 Oct 24 22:21 boinc_setup_complete
[2025-10-24 23:14:00] -rw------- 1 mf493845 unix-user      8192 Oct 24 22:21 boinc_mmap_file
[2025-10-24 23:14:00] -rw------- 1 mf493845 unix-user         0 Oct 24 22:21 boinc_lockfile
[2025-10-24 23:14:00] -rw------- 1 mf493845 unix-user      2560 Oct 24 22:21 pandaJob.out
[2025-10-24 23:14:00] -rw------- 1 mf493845 unix-user    978597 Oct 24 22:21 agis_schedconf.cvmfs.json
[2025-10-24 23:14:00] -rw------- 1 mf493845 unix-user   1560772 Oct 24 22:21 agis_ddmendpoints.agis.ALL.json
[2025-10-24 23:14:00] drwx------ 5 mf493845 unix-user       440 Oct 24 22:21 pilot3
[2025-10-24 23:14:00] -rw------- 1 mf493845 unix-user 208253375 Oct 24 23:12 HITS.46771637._073888.pool.root.1
[2025-10-24 23:14:00] -rw------- 1 mf493845 unix-user      1016 Oct 24 23:12 memory_monitor_summary.json
[2025-10-24 23:14:00] -rw------- 1 mf493845 unix-user    292712 Oct 24 23:12 log.46771637._073888.job.log.tgz.1
[2025-10-24 23:14:00] -rw------- 1 mf493845 unix-user      7755 Oct 24 23:13 heartbeat.json
[2025-10-24 23:14:00] -rw------- 1 mf493845 unix-user        95 Oct 24 23:13 pilot_heartbeat.json
[2025-10-24 23:14:00] -rw------- 1 mf493845 unix-user      4906 Oct 24 23:14 pilotlog.txt
[2025-10-24 23:14:00] -rw------- 1 mf493845 unix-user    484539 Oct 24 23:14 log.46771637._073888.job.log.1
[2025-10-24 23:14:00] -rw------- 1 mf493845 unix-user       357 Oct 24 23:14 output.list
[2025-10-24 23:14:00] -rw------- 1 mf493845 unix-user       620 Oct 24 23:14 runtime_log
[2025-10-24 23:14:00] -rw------- 1 mf493845 unix-user    798720 Oct 24 23:14 result.tar.gz
[2025-10-24 23:14:00] -rw------- 1 mf493845 unix-user      9076 Oct 24 23:14 runtime_log.err
[2025-10-24 23:14:00] -rw------- 1 mf493845 unix-user       642 Oct 24 23:14 hzeMDmb4XV8n9Rq4apOajLDm4fhM0noT9bVof3QYDm4EgMDmnbECLo.diag
[2025-10-24 23:14:00] -rw------- 1 mf493845 unix-user     22293 Oct 24 23:14 stderr.txt
[2025-10-24 23:14:00] HITS file was successfully produced:
[2025-10-24 23:14:00] -rw------- 1 mf493845 unix-user 208253375 Oct 24 23:12 shared/HITS.pool.root.1
[2025-10-24 23:14:00]  *** Contents of shared directory: ***
[2025-10-24 23:14:00] total 429188
[2025-10-24 23:14:00] -rw-r--r-- 2 mf493845 unix-user 229839464 Oct 24 22:21 ATLAS.root_0
[2025-10-24 23:14:00] -rw-r--r-- 2 mf493845 unix-user     15120 Oct 24 22:21 start_atlas.sh
[2025-10-24 23:14:00] -rw-r--r-- 2 mf493845 unix-user    569678 Oct 24 22:21 input.tar.gz
[2025-10-24 23:14:00] -rw------- 1 mf493845 unix-user 208253375 Oct 24 23:12 HITS.pool.root.1
[2025-10-24 23:14:00] -rw------- 1 mf493845 unix-user    798720 Oct 24 23:14 result.tar.gz
23:14:02 (2300): run_atlas exited; CPU time 22347.810484
23:14:02 (2300): called boinc_finish(0)

</stderr_txt>
]]>

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