Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
08:01:13 (225932): wrapper (7.7.26015): starting
08:01:13 (225932): wrapper: running run_atlas (--nthreads 4)
[2025-10-25 08:01:13] Arguments: --nthreads 4
[2025-10-25 08:01:13] Threads: 4
[2025-10-25 08:01:13] Checking for CVMFS
[2025-10-25 08:01:13] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-25 08:01:13] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-25 08:01:13] Running cvmfs_config stat atlas.cern.ch
[2025-10-25 08:01:13] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-25 08:01:13] 2.9.2.0 2150638 6230 93988 152107 1 57 24897551 36864001 0 130560 0 5949182 99.991 232815 1076 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-10-25 08:01:13] CVMFS is ok
[2025-10-25 08:01:13] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-25 08:01:13] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-25 08:01:13] Further information can be found at the LHC@home message board.
[2025-10-25 08:01:13] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-25 08:01:13] Checking for apptainer binary...
[2025-10-25 08:01:13] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-25 08:01:13] Running /usr/bin/apptainer --version
[2025-10-25 08:01:13] apptainer version 1.4.1-1.1
[2025-10-25 08:01:13] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-25 08:01:13] thA315b
[2025-10-25 08:01:13] apptainer works
[2025-10-25 08:01:14] Set ATHENA_PROC_NUMBER=4
[2025-10-25 08:01:14] Set ATHENA_CORE_NUMBER=4
[2025-10-25 08:01:14] Starting ATLAS job with PandaID=6855629431
[2025-10-25 08:01:14] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-25 09:09:31]  *** The last 200 lines of the pilot log: ***
[2025-10-25 09:09:31] 2025-10-25 07:08:50,803 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-25 09:09:31] 2025-10-25 07:08:50,803 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-25 09:09:31] 2025-10-25 07:08:50,803 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-25 09:09:31] 2025-10-25 07:08:50,803 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-25 09:09:31] 2025-10-25 07:08:50,804 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-25 09:09:31] 2025-10-25 07:08:50,804 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-25 09:09:31] 2025-10-25 07:08:50,804 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-25 09:09:31] 2025-10-25 07:08:50,804 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-25 09:09:31] 2025-10-25 07:08:50,804 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-25 09:09:31] 2025-10-25 07:08:50,804 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-25 09:09:31] 2025-10-25 07:08:50,804 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-25 09:09:31] 2025-10-25 07:08:50,804 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-25 09:09:31] 2025-10-25 07:08:50,804 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-25 09:09:31] 2025-10-25 07:08:50,804 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-25 09:09:31] 2025-10-25 07:08:50,804 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-25 09:09:31] 2025-10-25 07:08:50,804 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-25 09:09:31] 2025-10-25 07:08:50,804 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-25 09:09:31] 2025-10-25 07:08:50,804 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-25 09:09:31] 2025-10-25 07:08:50,804 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-25 09:09:31] 2025-10-25 07:08:50,804 | INFO     | job 6855629431 has completed (purged errors)
[2025-10-25 09:09:31] 2025-10-25 07:08:50,804 | INFO     | overall cleanup function is called
[2025-10-25 09:09:31] 2025-10-25 07:08:51,811 | INFO     | --- collectZombieJob: --- 10, [236258]
[2025-10-25 09:09:31] 2025-10-25 07:08:51,811 | INFO     | zombie collector waiting for pid 236258
[2025-10-25 09:09:31] 2025-10-25 07:08:51,811 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-25 09:09:31] 2025-10-25 07:08:51,811 | INFO     | collected zombie processes
[2025-10-25 09:09:31] 2025-10-25 07:08:51,811 | INFO     | will attempt to kill all subprocesses of pid=236258
[2025-10-25 09:09:31] 2025-10-25 07:08:51,857 | INFO     | process IDs to be killed: [236258] (in reverse order)
[2025-10-25 09:09:31] 2025-10-25 07:08:51,884 | WARNING  | found no corresponding commands to process id(s)
[2025-10-25 09:09:31] 2025-10-25 07:08:51,884 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-25 09:09:31] 2025-10-25 07:08:51,885 | INFO     | did not find any defunct processes belonging to 236258
[2025-10-25 09:09:31] 2025-10-25 07:08:51,886 | INFO     | did not find any defunct processes belonging to 236258
[2025-10-25 09:09:31] 2025-10-25 07:08:51,886 | INFO     | ready for new job
[2025-10-25 09:09:31] 2025-10-25 07:08:51,886 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-25 09:09:31] 2025-10-25 07:08:51,887 | INFO     | ***************************************
[2025-10-25 09:09:31] 2025-10-25 07:08:51,887 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-25 09:09:31] 2025-10-25 07:08:51,887 | INFO     | ***************************************
[2025-10-25 09:09:31] 2025-10-25 07:08:51,887 | INFO     | 
[2025-10-25 09:09:31] 2025-10-25 07:08:51,888 | INFO     | architecture information:
[2025-10-25 09:09:31] 2025-10-25 07:08:51,888 | INFO     | executing command: cat /etc/os-release
[2025-10-25 09:09:31] 2025-10-25 07:08:51,897 | INFO     | cat /etc/os-release:
[2025-10-25 09:09:31] NAME="CentOS Linux"
[2025-10-25 09:09:31] VERSION="7 (Core)"
[2025-10-25 09:09:31] ID="centos"
[2025-10-25 09:09:31] ID_LIKE="rhel fedora"
[2025-10-25 09:09:31] VERSION_ID="7"
[2025-10-25 09:09:31] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-25 09:09:31] ANSI_COLOR="0;31"
[2025-10-25 09:09:31] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-25 09:09:31] HOME_URL="https://www.centos.org/"
[2025-10-25 09:09:31] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-25 09:09:31] 
[2025-10-25 09:09:31] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-25 09:09:31] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-25 09:09:31] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-25 09:09:31] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-25 09:09:31] 
[2025-10-25 09:09:31] 2025-10-25 07:08:51,898 | INFO     | ***************************************
[2025-10-25 09:09:31] 2025-10-25 07:08:52,401 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-10-25 09:09:31] 2025-10-25 07:08:52,414 | INFO     | sufficient remaining disk space (334103576576 B)
[2025-10-25 09:09:31] 2025-10-25 07:08:52,414 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-25 09:09:31] 2025-10-25 07:08:52,414 | INFO     | current server update state: UPDATING_FINAL
[2025-10-25 09:09:31] 2025-10-25 07:08:52,415 | INFO     | update_server=False
[2025-10-25 09:09:31] 2025-10-25 07:08:52,415 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-25 09:09:31] 2025-10-25 07:08:52,415 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-25 09:09:31] 2025-10-25 07:08:52,415 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-25 09:09:31] 2025-10-25 07:08:52,415 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-25 09:09:31] 2025-10-25 07:08:52,447 | INFO     | all data control threads have been joined
[2025-10-25 09:09:31] 2025-10-25 07:08:52,453 | INFO     | all job control threads have been joined
[2025-10-25 09:09:31] 2025-10-25 07:08:52,624 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-25 09:09:31] 2025-10-25 07:08:52,624 | INFO     | aborting loop
[2025-10-25 09:09:31] 2025-10-25 07:08:53,420 | INFO     | [job] retrieve thread has finished
[2025-10-25 09:09:31] 2025-10-25 07:08:53,421 | INFO     | [job] queue monitor thread has finished
[2025-10-25 09:09:31] 2025-10-25 07:08:53,453 | INFO     | [data] control thread has finished
[2025-10-25 09:09:31] 2025-10-25 07:08:53,458 | INFO     | [job] control thread has finished
[2025-10-25 09:09:31] 2025-10-25 07:08:53,608 | INFO     | [payload] failed_post thread has finished
[2025-10-25 09:09:31] 2025-10-25 07:08:53,629 | INFO     | [job] job monitor thread has finished
[2025-10-25 09:09:31] 2025-10-25 07:08:53,830 | INFO     | [data] copytool_in thread has finished
[2025-10-25 09:09:31] 2025-10-25 07:08:53,845 | INFO     | [payload] execute_payloads thread has finished
[2025-10-25 09:09:31] 2025-10-25 07:08:53,882 | INFO     | all payload control threads have been joined
[2025-10-25 09:09:31] 2025-10-25 07:08:54,039 | INFO     | [job] validate thread has finished
[2025-10-25 09:09:31] 2025-10-25 07:08:54,098 | INFO     | [job] create_data_payload thread has finished
[2025-10-25 09:09:31] 2025-10-25 07:08:54,134 | INFO     | [payload] validate_pre thread has finished
[2025-10-25 09:09:31] 2025-10-25 07:08:54,379 | INFO     | [payload] validate_post thread has finished
[2025-10-25 09:09:31] 2025-10-25 07:08:54,399 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-25 09:09:31] 2025-10-25 07:08:54,420 | INFO     | [data] copytool_out thread has finished
[2025-10-25 09:09:31] 2025-10-25 07:08:54,888 | INFO     | [payload] control thread has finished
[2025-10-25 09:09:31] 2025-10-25 07:08:56,422 | INFO     | [data] queue_monitor thread has finished
[2025-10-25 09:09:31] 2025-10-25 07:09:23,222 | INFO     | PID=229716 has CPU usage=0.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-10-25 09:09:31] 2025-10-25 07:09:23,222 | INFO     | found 0 job(s) in 20 queues
[2025-10-25 09:09:31] 2025-10-25 07:09:23,222 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-25 09:09:31] 2025-10-25 07:09:23,222 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-25 09:09:31] 2025-10-25 07:09:24,436 | INFO     | [monitor] cgroup control has ended
[2025-10-25 09:09:31] 2025-10-25 07:09:26,532 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140029877909312)>', '<ExcThread(monitor, started 140029531768576)>']
[2025-10-25 09:09:31] 2025-10-25 07:09:27,243 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-25 09:09:31] 2025-10-25 07:09:27,244 | INFO     | [monitor] control thread has ended
[2025-10-25 09:09:31] 2025-10-25 07:09:31,557 | INFO     | all workflow threads have been joined
[2025-10-25 09:09:31] 2025-10-25 07:09:31,557 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-25 09:09:31] 2025-10-25 07:09:31,558 | INFO     | traces error code: 0
[2025-10-25 09:09:31] 2025-10-25 07:09:31,558 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-25 09:09:31] 2025-10-25 07:09:31,613 [wrapper] ==== pilot stdout END ====
[2025-10-25 09:09:31] 2025-10-25 07:09:31,615 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-25 09:09:31] 2025-10-25 07:09:31,618 [wrapper] pilotpid: 229716
[2025-10-25 09:09:31] 2025-10-25 07:09:31,620 [wrapper] Pilot exit status: 0
[2025-10-25 09:09:31] 2025-10-25 07:09:31,628 [wrapper] pandaids: 6855629431
[2025-10-25 09:09:31] 2025-10-25 07:09:31,646 [wrapper] cleanup supervisor_pilot  245740 229717
[2025-10-25 09:09:31] 2025-10-25 07:09:31,649 [wrapper] Test setup, not cleaning
[2025-10-25 09:09:31] 2025-10-25 07:09:31,652 [wrapper] apfmon messages muted
[2025-10-25 09:09:31] 2025-10-25 07:09:31,654 [wrapper] ==== wrapper stdout END ====
[2025-10-25 09:09:31] 2025-10-25 07:09:31,657 [wrapper] ==== wrapper stderr END ====
[2025-10-25 09:09:31]  *** Error codes and diagnostics ***
[2025-10-25 09:09:31]     "exeErrorCode": 0,
[2025-10-25 09:09:31]     "exeErrorDiag": "",
[2025-10-25 09:09:31]     "pilotErrorCode": 0,
[2025-10-25 09:09:31]     "pilotErrorDiag": "",
[2025-10-25 09:09:31]  *** Listing of results directory ***
[2025-10-25 09:09:31] total 426492
[2025-10-25 09:09:31] -rw-r--r-- 1 boinc boinc    557409 Oct 24 14:48 pilot3.tar.gz
[2025-10-25 09:09:31] -rw-r--r-- 1 boinc boinc      5112 Oct 24 15:33 queuedata.json
[2025-10-25 09:09:31] -rwx------ 1 boinc boinc     36292 Oct 24 15:36 runpilot2-wrapper.sh
[2025-10-25 09:09:31] -rw-r--r-- 1 boinc boinc       100 Oct 25 08:01 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-25 09:09:31] -rwxr-xr-x 1 boinc boinc      7986 Oct 25 08:01 run_atlas
[2025-10-25 09:09:31] -rw-r--r-- 1 boinc boinc       105 Oct 25 08:01 job.xml
[2025-10-25 09:09:31] -rw-r--r-- 2 boinc boinc 226885911 Oct 25 08:01 EVNT.46771634._004754.pool.root.1
[2025-10-25 09:09:31] -rw-r--r-- 2 boinc boinc    569692 Oct 25 08:01 input.tar.gz
[2025-10-25 09:09:31] -rw-r--r-- 2 boinc boinc     15120 Oct 25 08:01 start_atlas.sh
[2025-10-25 09:09:31] drwxrwx--x 2 boinc boinc      4096 Oct 25 08:01 shared
[2025-10-25 09:09:31] -rw-r--r-- 1 boinc boinc         0 Oct 25 08:01 boinc_setup_complete
[2025-10-25 09:09:31] -rw-r--r-- 1 boinc boinc      6443 Oct 25 08:01 init_data.xml
[2025-10-25 09:09:31] -rw-r--r-- 1 boinc boinc         0 Oct 25 08:01 boinc_lockfile
[2025-10-25 09:09:31] -rw-r--r-- 1 boinc boinc      2561 Oct 25 08:01 pandaJob.out
[2025-10-25 09:09:31] -rw------- 1 boinc boinc    978605 Oct 25 08:01 agis_schedconf.cvmfs.json
[2025-10-25 09:09:31] -rw------- 1 boinc boinc   1560772 Oct 25 08:01 agis_ddmendpoints.agis.ALL.json
[2025-10-25 09:09:31] drwx------ 5 boinc boinc      4096 Oct 25 08:01 pilot3
[2025-10-25 09:09:31] -rw------- 1 boinc boinc 204200955 Oct 25 09:08 HITS.46771637._119289.pool.root.1
[2025-10-25 09:09:31] -rw-r--r-- 1 boinc boinc       529 Oct 25 09:08 boinc_task_state.xml
[2025-10-25 09:09:31] -rw------- 1 boinc boinc        95 Oct 25 09:08 pilot_heartbeat.json
[2025-10-25 09:09:31] -rw------- 1 boinc boinc      1019 Oct 25 09:08 memory_monitor_summary.json
[2025-10-25 09:09:31] -rw------- 1 boinc boinc    265264 Oct 25 09:08 log.46771637._119289.job.log.tgz.1
[2025-10-25 09:09:31] -rw------- 1 boinc boinc      7750 Oct 25 09:08 heartbeat.json
[2025-10-25 09:09:31] -rw-r--r-- 1 boinc boinc        27 Oct 25 09:09 wrapper_checkpoint.txt
[2025-10-25 09:09:31] -rw-r--r-- 1 boinc boinc      8192 Oct 25 09:09 boinc_mmap_file
[2025-10-25 09:09:31] -rw------- 1 boinc boinc      4751 Oct 25 09:09 pilotlog.txt
[2025-10-25 09:09:31] -rw------- 1 boinc boinc    604575 Oct 25 09:09 log.46771637._119289.job.log.1
[2025-10-25 09:09:31] -rw------- 1 boinc boinc       357 Oct 25 09:09 output.list
[2025-10-25 09:09:31] -rw-r--r-- 1 boinc boinc       620 Oct 25 09:09 runtime_log
[2025-10-25 09:09:31] -rw------- 1 boinc boinc    890880 Oct 25 09:09 result.tar.gz
[2025-10-25 09:09:31] -rw-r--r-- 1 boinc boinc      8782 Oct 25 09:09 runtime_log.err
[2025-10-25 09:09:31] -rw------- 1 boinc boinc       659 Oct 25 09:09 LIQNDmk8WW8n9Rq4apOajLDm4fhM0noT9bVof3QYDmgQlMDmwwdlJo.diag
[2025-10-25 09:09:31] -rw-r--r-- 1 boinc boinc     12730 Oct 25 09:09 stderr.txt
[2025-10-25 09:09:31] HITS file was successfully produced:
[2025-10-25 09:09:31] -rw------- 1 boinc boinc 204200955 Oct 25 09:08 shared/HITS.pool.root.1
[2025-10-25 09:09:31]  *** Contents of shared directory: ***
[2025-10-25 09:09:31] total 422444
[2025-10-25 09:09:31] -rw-r--r-- 2 boinc boinc 226885911 Oct 25 08:01 ATLAS.root_0
[2025-10-25 09:09:31] -rw-r--r-- 2 boinc boinc    569692 Oct 25 08:01 input.tar.gz
[2025-10-25 09:09:31] -rw-r--r-- 2 boinc boinc     15120 Oct 25 08:01 start_atlas.sh
[2025-10-25 09:09:31] -rw------- 1 boinc boinc 204200955 Oct 25 09:08 HITS.pool.root.1
[2025-10-25 09:09:31] -rw------- 1 boinc boinc    890880 Oct 25 09:09 result.tar.gz
09:09:33 (225932): run_atlas exited; CPU time 15240.596480
09:09:33 (225932): called boinc_finish(0)

</stderr_txt>
]]>

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