Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
06:53:20 (201263): wrapper (7.7.26015): starting
06:53:20 (201263): wrapper: running run_atlas (--nthreads 4)
[2025-10-25 06:53:20] Arguments: --nthreads 4
[2025-10-25 06:53:20] Threads: 4
[2025-10-25 06:53:20] Checking for CVMFS
[2025-10-25 06:53:20] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-25 06:53:20] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-25 06:53:20] Running cvmfs_config stat atlas.cern.ch
[2025-10-25 06:53:20] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-25 06:53:20] 2.9.2.0 2150638 6162 94520 152106 1 57 24882020 36864000 0 130560 0 5883756 99.991 231445 1078 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-10-25 06:53:20] CVMFS is ok
[2025-10-25 06:53:20] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-25 06:53:20] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-25 06:53:20] Further information can be found at the LHC@home message board.
[2025-10-25 06:53:20] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-25 06:53:20] Checking for apptainer binary...
[2025-10-25 06:53:20] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-25 06:53:20] Running /usr/bin/apptainer --version
[2025-10-25 06:53:20] apptainer version 1.4.1-1.1
[2025-10-25 06:53:20] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-25 06:53:20] thA315b
[2025-10-25 06:53:20] apptainer works
[2025-10-25 06:53:20] Set ATHENA_PROC_NUMBER=4
[2025-10-25 06:53:20] Set ATHENA_CORE_NUMBER=4
[2025-10-25 06:53:20] Starting ATLAS job with PandaID=6855520460
[2025-10-25 06:53:20] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-25 08:00:50]  *** The last 200 lines of the pilot log: ***
[2025-10-25 08:00:50] 2025-10-25 06:00:18,633 | INFO     | will attempt to kill all subprocesses of pid=211611
[2025-10-25 08:00:50] 2025-10-25 06:00:18,678 | INFO     | process IDs to be killed: [211611] (in reverse order)
[2025-10-25 08:00:50] 2025-10-25 06:00:18,705 | WARNING  | found no corresponding commands to process id(s)
[2025-10-25 08:00:50] 2025-10-25 06:00:18,705 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-25 08:00:50] 2025-10-25 06:00:18,707 | INFO     | did not find any defunct processes belonging to 211611
[2025-10-25 08:00:50] 2025-10-25 06:00:18,708 | INFO     | did not find any defunct processes belonging to 211611
[2025-10-25 08:00:50] 2025-10-25 06:00:18,708 | INFO     | ready for new job
[2025-10-25 08:00:50] 2025-10-25 06:00:18,708 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-25 08:00:50] 2025-10-25 06:00:18,709 | INFO     | ***************************************
[2025-10-25 08:00:50] 2025-10-25 06:00:18,709 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-25 08:00:50] 2025-10-25 06:00:18,709 | INFO     | ***************************************
[2025-10-25 08:00:50] 2025-10-25 06:00:18,709 | INFO     | 
[2025-10-25 08:00:50] 2025-10-25 06:00:18,709 | INFO     | architecture information:
[2025-10-25 08:00:50] 2025-10-25 06:00:18,709 | INFO     | executing command: cat /etc/os-release
[2025-10-25 08:00:50] 2025-10-25 06:00:18,719 | INFO     | cat /etc/os-release:
[2025-10-25 08:00:50] NAME="CentOS Linux"
[2025-10-25 08:00:50] VERSION="7 (Core)"
[2025-10-25 08:00:50] ID="centos"
[2025-10-25 08:00:50] ID_LIKE="rhel fedora"
[2025-10-25 08:00:50] VERSION_ID="7"
[2025-10-25 08:00:50] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-25 08:00:50] ANSI_COLOR="0;31"
[2025-10-25 08:00:50] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-25 08:00:50] HOME_URL="https://www.centos.org/"
[2025-10-25 08:00:50] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-25 08:00:50] 
[2025-10-25 08:00:50] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-25 08:00:50] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-25 08:00:50] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-25 08:00:50] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-25 08:00:50] 
[2025-10-25 08:00:50] 2025-10-25 06:00:18,719 | INFO     | ***************************************
[2025-10-25 08:00:50] 2025-10-25 06:00:19,222 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-10-25 08:00:50] 2025-10-25 06:00:19,236 | INFO     | sufficient remaining disk space (334161248256 B)
[2025-10-25 08:00:50] 2025-10-25 06:00:19,236 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-25 08:00:50] 2025-10-25 06:00:19,236 | INFO     | current server update state: UPDATING_FINAL
[2025-10-25 08:00:50] 2025-10-25 06:00:19,236 | INFO     | update_server=False
[2025-10-25 08:00:50] 2025-10-25 06:00:19,236 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-25 08:00:50] 2025-10-25 06:00:19,236 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-25 08:00:50] 2025-10-25 06:00:19,236 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-25 08:00:50] 2025-10-25 06:00:19,236 | INFO     | aborting loop
[2025-10-25 08:00:50] 2025-10-25 06:00:19,236 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-25 08:00:50] 2025-10-25 06:00:19,237 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-25 08:00:50] 2025-10-25 06:00:19,825 | INFO     | all data control threads have been joined
[2025-10-25 08:00:50] 2025-10-25 06:00:20,239 | INFO     | [job] job monitor thread has finished
[2025-10-25 08:00:50] 2025-10-25 06:00:20,239 | INFO     | all job control threads have been joined
[2025-10-25 08:00:50] 2025-10-25 06:00:20,241 | INFO     | [job] retrieve thread has finished
[2025-10-25 08:00:50] 2025-10-25 06:00:20,242 | INFO     | [job] queue monitor thread has finished
[2025-10-25 08:00:50] 2025-10-25 06:00:20,323 | INFO     | [payload] execute_payloads thread has finished
[2025-10-25 08:00:50] 2025-10-25 06:00:20,400 | INFO     | [payload] failed_post thread has finished
[2025-10-25 08:00:50] 2025-10-25 06:00:20,433 | INFO     | all payload control threads have been joined
[2025-10-25 08:00:50] 2025-10-25 06:00:20,478 | INFO     | [payload] validate_pre thread has finished
[2025-10-25 08:00:50] 2025-10-25 06:00:20,479 | INFO     | [job] create_data_payload thread has finished
[2025-10-25 08:00:50] 2025-10-25 06:00:20,479 | INFO     | [job] validate thread has finished
[2025-10-25 08:00:50] 2025-10-25 06:00:20,830 | INFO     | [data] control thread has finished
[2025-10-25 08:00:50] 2025-10-25 06:00:20,926 | INFO     | [payload] validate_post thread has finished
[2025-10-25 08:00:50] 2025-10-25 06:00:21,125 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-25 08:00:50] 2025-10-25 06:00:21,242 | INFO     | [data] copytool_out thread has finished
[2025-10-25 08:00:50] 2025-10-25 06:00:21,244 | INFO     | [job] control thread has finished
[2025-10-25 08:00:50] 2025-10-25 06:00:21,425 | INFO     | [data] copytool_in thread has finished
[2025-10-25 08:00:50] 2025-10-25 06:00:21,439 | INFO     | [payload] control thread has finished
[2025-10-25 08:00:50] 2025-10-25 06:00:23,243 | INFO     | [data] queue_monitor thread has finished
[2025-10-25 08:00:50] 2025-10-25 06:00:32,472 | INFO     | [monitor] cgroup control has ended
[2025-10-25 08:00:50] 2025-10-25 06:00:33,510 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140402494564160)>', '<ExcThread(monitor, started 140401826567936)>']
[2025-10-25 08:00:50] 2025-10-25 06:00:38,536 | INFO     | all workflow threads have been joined
[2025-10-25 08:00:50] 2025-10-25 06:00:38,536 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-25 08:00:50] 2025-10-25 06:00:38,536 | INFO     | traces error code: 0
[2025-10-25 08:00:50] 2025-10-25 06:00:38,536 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-25 08:00:50] 2025-10-25 06:00:50,196 | INFO     | PID=205066 has CPU usage=1.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-10-25 08:00:50] 2025-10-25 06:00:50,197 | INFO     | found 0 job(s) in 20 queues
[2025-10-25 08:00:50] 2025-10-25 06:00:50,197 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-25 08:00:50] 2025-10-25 06:00:50,197 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-25 08:00:50] 2025-10-25 06:00:50,197 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-25 08:00:50] 2025-10-25 06:00:50,197 | INFO     | [monitor] control thread has ended
[2025-10-25 08:00:50] 2025-10-25 06:00:50,248 [wrapper] ==== pilot stdout END ====
[2025-10-25 08:00:50] 2025-10-25 06:00:50,251 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-25 08:00:50] 2025-10-25 06:00:50,253 [wrapper] pilotpid: 205066
[2025-10-25 08:00:50] 2025-10-25 06:00:50,256 [wrapper] Pilot exit status: 0
[2025-10-25 08:00:50] 2025-10-25 06:00:50,263 [wrapper] pandaids: 6855520460
[2025-10-25 08:00:50] 2025-10-25 06:00:50,281 [wrapper] cleanup supervisor_pilot  221134 205067
[2025-10-25 08:00:50] 2025-10-25 06:00:50,284 [wrapper] Test setup, not cleaning
[2025-10-25 08:00:50] 2025-10-25 06:00:50,287 [wrapper] apfmon messages muted
[2025-10-25 08:00:50] 2025-10-25 06:00:50,289 [wrapper] ==== wrapper stdout END ====
[2025-10-25 08:00:50] 2025-10-25 06:00:50,292 [wrapper] ==== wrapper stderr END ====
[2025-10-25 08:00:50]  *** Error codes and diagnostics ***
[2025-10-25 08:00:50]     "exeErrorCode": 0,
[2025-10-25 08:00:50]     "exeErrorDiag": "",
[2025-10-25 08:00:50]     "pilotErrorCode": 0,
[2025-10-25 08:00:50]     "pilotErrorDiag": "",
[2025-10-25 08:00:50]  *** Listing of results directory ***
[2025-10-25 08:00:50] total 429872
[2025-10-25 08:00:50] -rw-r--r-- 1 boinc boinc    557409 Oct 24 14:09 pilot3.tar.gz
[2025-10-25 08:00:50] -rwx------ 1 boinc boinc     36292 Oct 24 14:10 runpilot2-wrapper.sh
[2025-10-25 08:00:50] -rw-r--r-- 1 boinc boinc      5112 Oct 24 14:10 queuedata.json
[2025-10-25 08:00:50] -rw-r--r-- 1 boinc boinc       100 Oct 25 06:53 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-25 08:00:50] -rwxr-xr-x 1 boinc boinc      7986 Oct 25 06:53 run_atlas
[2025-10-25 08:00:50] -rw-r--r-- 1 boinc boinc       105 Oct 25 06:53 job.xml
[2025-10-25 08:00:50] -rw-r--r-- 2 boinc boinc 226646011 Oct 25 06:53 EVNT.46771634._004717.pool.root.1
[2025-10-25 08:00:50] -rw-r--r-- 2 boinc boinc    569684 Oct 25 06:53 input.tar.gz
[2025-10-25 08:00:50] -rw-r--r-- 2 boinc boinc     15120 Oct 25 06:53 start_atlas.sh
[2025-10-25 08:00:50] drwxrwx--x 2 boinc boinc      4096 Oct 25 06:53 shared
[2025-10-25 08:00:50] -rw-r--r-- 1 boinc boinc         0 Oct 25 06:53 boinc_setup_complete
[2025-10-25 08:00:50] -rw-r--r-- 1 boinc boinc      6443 Oct 25 06:53 init_data.xml
[2025-10-25 08:00:50] -rw-r--r-- 1 boinc boinc         0 Oct 25 06:53 boinc_lockfile
[2025-10-25 08:00:50] -rw-r--r-- 1 boinc boinc      2562 Oct 25 06:53 pandaJob.out
[2025-10-25 08:00:50] -rw------- 1 boinc boinc    978589 Oct 25 06:53 agis_schedconf.cvmfs.json
[2025-10-25 08:00:50] -rw------- 1 boinc boinc   1560772 Oct 25 06:53 agis_ddmendpoints.agis.ALL.json
[2025-10-25 08:00:50] drwx------ 5 boinc boinc      4096 Oct 25 06:53 pilot3
[2025-10-25 08:00:50] -rw------- 1 boinc boinc 207945723 Oct 25 07:59 HITS.46771637._118289.pool.root.1
[2025-10-25 08:00:50] -rw-r--r-- 1 boinc boinc       529 Oct 25 08:00 boinc_task_state.xml
[2025-10-25 08:00:50] -rw------- 1 boinc boinc      1018 Oct 25 08:00 memory_monitor_summary.json
[2025-10-25 08:00:50] -rw------- 1 boinc boinc    254747 Oct 25 08:00 log.46771637._118289.job.log.tgz.1
[2025-10-25 08:00:50] -rw------- 1 boinc boinc      7758 Oct 25 08:00 heartbeat.json
[2025-10-25 08:00:50] -rw-r--r-- 1 boinc boinc      8192 Oct 25 08:00 boinc_mmap_file
[2025-10-25 08:00:50] -rw-r--r-- 1 boinc boinc        27 Oct 25 08:00 wrapper_checkpoint.txt
[2025-10-25 08:00:50] -rw------- 1 boinc boinc       746 Oct 25 08:00 pilotlog.txt
[2025-10-25 08:00:50] -rw------- 1 boinc boinc        95 Oct 25 08:00 pilot_heartbeat.json
[2025-10-25 08:00:50] -rw------- 1 boinc boinc    598283 Oct 25 08:00 log.46771637._118289.job.log.1
[2025-10-25 08:00:50] -rw------- 1 boinc boinc       357 Oct 25 08:00 output.list
[2025-10-25 08:00:50] -rw-r--r-- 1 boinc boinc       620 Oct 25 08:00 runtime_log
[2025-10-25 08:00:50] -rw------- 1 boinc boinc    870400 Oct 25 08:00 result.tar.gz
[2025-10-25 08:00:50] -rw-r--r-- 1 boinc boinc      8782 Oct 25 08:00 runtime_log.err
[2025-10-25 08:00:50] -rw------- 1 boinc boinc       659 Oct 25 08:00 ZPzMDmGoVW8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmQhBODm2x93In.diag
[2025-10-25 08:00:50] -rw-r--r-- 1 boinc boinc     10189 Oct 25 08:00 stderr.txt
[2025-10-25 08:00:50] HITS file was successfully produced:
[2025-10-25 08:00:50] -rw------- 1 boinc boinc 207945723 Oct 25 07:59 shared/HITS.pool.root.1
[2025-10-25 08:00:50]  *** Contents of shared directory: ***
[2025-10-25 08:00:50] total 425844
[2025-10-25 08:00:50] -rw-r--r-- 2 boinc boinc 226646011 Oct 25 06:53 ATLAS.root_0
[2025-10-25 08:00:50] -rw-r--r-- 2 boinc boinc    569684 Oct 25 06:53 input.tar.gz
[2025-10-25 08:00:50] -rw-r--r-- 2 boinc boinc     15120 Oct 25 06:53 start_atlas.sh
[2025-10-25 08:00:50] -rw------- 1 boinc boinc 207945723 Oct 25 07:59 HITS.pool.root.1
[2025-10-25 08:00:50] -rw------- 1 boinc boinc    870400 Oct 25 08:00 result.tar.gz
08:00:51 (201263): run_atlas exited; CPU time 15148.819892
08:00:51 (201263): called boinc_finish(0)

</stderr_txt>
]]>

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