Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
04:29:31 (3449708): wrapper (7.7.26015): starting
04:29:31 (3449708): wrapper: running run_atlas (--nthreads 4)
[2025-10-25 04:29:31] Arguments: --nthreads 4
[2025-10-25 04:29:31] Threads: 4
[2025-10-25 04:29:31] Checking for CVMFS
[2025-10-25 04:29:32] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-25 04:29:32] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-25 04:29:32] Running cvmfs_config stat atlas.cern.ch
[2025-10-25 04:29:32] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-25 04:29:32] 2.9.2.0 1545554 5948 97188 152103 1 57 31177872 36864001 0 130560 0 4905175 99.990 226573 1032 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-10-25 04:29:32] CVMFS is ok
[2025-10-25 04:29:32] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-25 04:29:32] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-25 04:29:32] Further information can be found at the LHC@home message board.
[2025-10-25 04:29:32] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-25 04:29:32] Checking for apptainer binary...
[2025-10-25 04:29:32] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-25 04:29:32] Running /usr/bin/apptainer --version
[2025-10-25 04:29:32] apptainer version 1.4.1-1.1
[2025-10-25 04:29:32] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-25 04:29:32] thA309
[2025-10-25 04:29:32] apptainer works
[2025-10-25 04:29:32] Set ATHENA_PROC_NUMBER=4
[2025-10-25 04:29:32] Set ATHENA_CORE_NUMBER=4
[2025-10-25 04:29:32] Starting ATLAS job with PandaID=6855518494
[2025-10-25 04:29:32] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-25 05:47:52]  *** The last 200 lines of the pilot log: ***
[2025-10-25 05:47:52] 2025-10-25 03:47:13,392 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-25 05:47:52] 2025-10-25 03:47:13,392 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-25 05:47:52] 2025-10-25 03:47:13,392 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-25 05:47:52] 2025-10-25 03:47:13,392 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-25 05:47:52] 2025-10-25 03:47:13,392 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-25 05:47:52] 2025-10-25 03:47:13,392 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-25 05:47:52] 2025-10-25 03:47:13,392 | INFO     | job 6855518494 has completed (purged errors)
[2025-10-25 05:47:52] 2025-10-25 03:47:13,392 | INFO     | overall cleanup function is called
[2025-10-25 05:47:52] 2025-10-25 03:47:14,399 | INFO     | --- collectZombieJob: --- 10, [3460081]
[2025-10-25 05:47:52] 2025-10-25 03:47:14,399 | INFO     | zombie collector waiting for pid 3460081
[2025-10-25 05:47:52] 2025-10-25 03:47:14,399 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-25 05:47:52] 2025-10-25 03:47:14,399 | INFO     | collected zombie processes
[2025-10-25 05:47:52] 2025-10-25 03:47:14,400 | INFO     | will attempt to kill all subprocesses of pid=3460081
[2025-10-25 05:47:52] 2025-10-25 03:47:14,450 | INFO     | process IDs to be killed: [3460081] (in reverse order)
[2025-10-25 05:47:52] 2025-10-25 03:47:14,487 | WARNING  | found no corresponding commands to process id(s)
[2025-10-25 05:47:52] 2025-10-25 03:47:14,487 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-25 05:47:52] 2025-10-25 03:47:14,489 | INFO     | did not find any defunct processes belonging to 3460081
[2025-10-25 05:47:52] 2025-10-25 03:47:14,491 | INFO     | did not find any defunct processes belonging to 3460081
[2025-10-25 05:47:52] 2025-10-25 03:47:14,491 | INFO     | ready for new job
[2025-10-25 05:47:52] 2025-10-25 03:47:14,491 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-25 05:47:52] 2025-10-25 03:47:14,492 | INFO     | ***************************************
[2025-10-25 05:47:52] 2025-10-25 03:47:14,492 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-25 05:47:52] 2025-10-25 03:47:14,492 | INFO     | ***************************************
[2025-10-25 05:47:52] 2025-10-25 03:47:14,492 | INFO     | 
[2025-10-25 05:47:52] 2025-10-25 03:47:14,492 | INFO     | architecture information:
[2025-10-25 05:47:52] 2025-10-25 03:47:14,492 | INFO     | executing command: cat /etc/os-release
[2025-10-25 05:47:52] 2025-10-25 03:47:14,507 | INFO     | cat /etc/os-release:
[2025-10-25 05:47:52] NAME="CentOS Linux"
[2025-10-25 05:47:52] VERSION="7 (Core)"
[2025-10-25 05:47:52] ID="centos"
[2025-10-25 05:47:52] ID_LIKE="rhel fedora"
[2025-10-25 05:47:52] VERSION_ID="7"
[2025-10-25 05:47:52] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-25 05:47:52] ANSI_COLOR="0;31"
[2025-10-25 05:47:52] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-25 05:47:52] HOME_URL="https://www.centos.org/"
[2025-10-25 05:47:52] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-25 05:47:52] 
[2025-10-25 05:47:52] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-25 05:47:52] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-25 05:47:52] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-25 05:47:52] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-25 05:47:52] 
[2025-10-25 05:47:52] 2025-10-25 03:47:14,508 | INFO     | ***************************************
[2025-10-25 05:47:52] 2025-10-25 03:47:15,011 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-10-25 05:47:52] 2025-10-25 03:47:15,030 | INFO     | sufficient remaining disk space (227978248192 B)
[2025-10-25 05:47:52] 2025-10-25 03:47:15,030 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-25 05:47:52] 2025-10-25 03:47:15,030 | INFO     | current server update state: UPDATING_FINAL
[2025-10-25 05:47:52] 2025-10-25 03:47:15,030 | INFO     | update_server=False
[2025-10-25 05:47:52] 2025-10-25 03:47:15,030 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-25 05:47:52] 2025-10-25 03:47:15,030 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-25 05:47:52] 2025-10-25 03:47:15,030 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-25 05:47:52] 2025-10-25 03:47:15,031 | INFO     | aborting loop
[2025-10-25 05:47:52] 2025-10-25 03:47:15,148 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-25 05:47:52] 2025-10-25 03:47:15,400 | INFO     | all data control threads have been joined
[2025-10-25 05:47:52] 2025-10-25 03:47:15,754 | INFO     | all payload control threads have been joined
[2025-10-25 05:47:52] 2025-10-25 03:47:15,755 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-25 05:47:52] 2025-10-25 03:47:16,036 | INFO     | [job] retrieve thread has finished
[2025-10-25 05:47:52] 2025-10-25 03:47:16,036 | INFO     | [job] queue monitor thread has finished
[2025-10-25 05:47:52] 2025-10-25 03:47:16,037 | INFO     | [job] job monitor thread has finished
[2025-10-25 05:47:52] 2025-10-25 03:47:16,075 | INFO     | [payload] execute_payloads thread has finished
[2025-10-25 05:47:52] 2025-10-25 03:47:16,207 | INFO     | all job control threads have been joined
[2025-10-25 05:47:52] 2025-10-25 03:47:16,235 | INFO     | [data] copytool_in thread has finished
[2025-10-25 05:47:52] 2025-10-25 03:47:16,406 | INFO     | [data] control thread has finished
[2025-10-25 05:47:52] 2025-10-25 03:47:16,759 | INFO     | [payload] control thread has finished
[2025-10-25 05:47:52] 2025-10-25 03:47:16,897 | INFO     | [payload] failed_post thread has finished
[2025-10-25 05:47:52] 2025-10-25 03:47:17,023 | INFO     | [job] validate thread has finished
[2025-10-25 05:47:52] 2025-10-25 03:47:17,120 | INFO     | [payload] validate_pre thread has finished
[2025-10-25 05:47:52] 2025-10-25 03:47:17,124 | INFO     | [job] create_data_payload thread has finished
[2025-10-25 05:47:52] 2025-10-25 03:47:17,154 | INFO     | [data] copytool_out thread has finished
[2025-10-25 05:47:52] 2025-10-25 03:47:17,213 | INFO     | [job] control thread has finished
[2025-10-25 05:47:52] 2025-10-25 03:47:17,515 | INFO     | [payload] validate_post thread has finished
[2025-10-25 05:47:52] 2025-10-25 03:47:19,762 | INFO     | [data] queue_monitor thread has finished
[2025-10-25 05:47:52] 2025-10-25 03:47:25,621 | INFO     | job.realtimelogging is not enabled
[2025-10-25 05:47:52] 2025-10-25 03:47:26,626 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-25 05:47:52] 2025-10-25 03:47:45,127 | INFO     | PID=3453499 has CPU usage=0.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-25 05:47:52] 2025-10-25 03:47:45,127 | INFO     | found 0 job(s) in 20 queues
[2025-10-25 05:47:52] 2025-10-25 03:47:45,127 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-25 05:47:52] 2025-10-25 03:47:45,127 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-25 05:47:52] 2025-10-25 03:47:45,686 | INFO     | [monitor] cgroup control has ended
[2025-10-25 05:47:52] 2025-10-25 03:47:47,339 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140704129845056)>', '<ExcThread(monitor, started 140703178938112)>']
[2025-10-25 05:47:52] 2025-10-25 03:47:48,140 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-25 05:47:52] 2025-10-25 03:47:48,140 | INFO     | [monitor] control thread has ended
[2025-10-25 05:47:52] 2025-10-25 03:47:52,365 | INFO     | all workflow threads have been joined
[2025-10-25 05:47:52] 2025-10-25 03:47:52,365 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-25 05:47:52] 2025-10-25 03:47:52,365 | INFO     | traces error code: 0
[2025-10-25 05:47:52] 2025-10-25 03:47:52,366 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-25 05:47:52] 2025-10-25 03:47:52,450 [wrapper] ==== pilot stdout END ====
[2025-10-25 05:47:52] 2025-10-25 03:47:52,454 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-25 05:47:52] 2025-10-25 03:47:52,458 [wrapper] pilotpid: 3453499
[2025-10-25 05:47:52] 2025-10-25 03:47:52,462 [wrapper] Pilot exit status: 0
[2025-10-25 05:47:52] 2025-10-25 03:47:52,474 [wrapper] pandaids: 6855518494
[2025-10-25 05:47:52] 2025-10-25 03:47:52,498 [wrapper] cleanup supervisor_pilot 3472742 3453500
[2025-10-25 05:47:52] 2025-10-25 03:47:52,502 [wrapper] Test setup, not cleaning
[2025-10-25 05:47:52] 2025-10-25 03:47:52,506 [wrapper] apfmon messages muted
[2025-10-25 05:47:52] 2025-10-25 03:47:52,510 [wrapper] ==== wrapper stdout END ====
[2025-10-25 05:47:52] 2025-10-25 03:47:52,514 [wrapper] ==== wrapper stderr END ====
[2025-10-25 05:47:52]  *** Error codes and diagnostics ***
[2025-10-25 05:47:52]     "exeErrorCode": 0,
[2025-10-25 05:47:52]     "exeErrorDiag": "",
[2025-10-25 05:47:52]     "pilotErrorCode": 0,
[2025-10-25 05:47:52]     "pilotErrorDiag": "",
[2025-10-25 05:47:52]  *** Listing of results directory ***
[2025-10-25 05:47:52] total 427268
[2025-10-25 05:47:52] -rw-r--r-- 1 boinc boinc    557409 Oct 24 12:55 pilot3.tar.gz
[2025-10-25 05:47:52] -rwx------ 1 boinc boinc     36292 Oct 24 12:59 runpilot2-wrapper.sh
[2025-10-25 05:47:52] -rw-r--r-- 1 boinc boinc      5112 Oct 24 12:59 queuedata.json
[2025-10-25 05:47:52] -rw-r--r-- 1 boinc boinc       100 Oct 25 04:29 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-25 05:47:52] -rwxr-xr-x 1 boinc boinc      7986 Oct 25 04:29 run_atlas
[2025-10-25 05:47:52] -rw-r--r-- 1 boinc boinc       105 Oct 25 04:29 job.xml
[2025-10-25 05:47:52] -rw-r--r-- 2 boinc boinc 226990386 Oct 25 04:29 EVNT.46771634._004676.pool.root.1
[2025-10-25 05:47:52] -rw-r--r-- 2 boinc boinc    569678 Oct 25 04:29 input.tar.gz
[2025-10-25 05:47:52] -rw-r--r-- 2 boinc boinc     15120 Oct 25 04:29 start_atlas.sh
[2025-10-25 05:47:52] drwxrwx--x 2 boinc boinc      4096 Oct 25 04:29 shared
[2025-10-25 05:47:52] -rw-r--r-- 1 boinc boinc         0 Oct 25 04:29 boinc_setup_complete
[2025-10-25 05:47:52] -rw-r--r-- 1 boinc boinc      6377 Oct 25 04:29 init_data.xml
[2025-10-25 05:47:52] -rw-r--r-- 1 boinc boinc         0 Oct 25 04:29 boinc_lockfile
[2025-10-25 05:47:52] -rw-r--r-- 1 boinc boinc      2561 Oct 25 04:29 pandaJob.out
[2025-10-25 05:47:52] -rw------- 1 boinc boinc    978597 Oct 25 04:29 agis_schedconf.cvmfs.json
[2025-10-25 05:47:52] -rw------- 1 boinc boinc   1560772 Oct 25 04:29 agis_ddmendpoints.agis.ALL.json
[2025-10-25 05:47:52] drwx------ 5 boinc boinc      4096 Oct 25 04:29 pilot3
[2025-10-25 05:47:52] -rw------- 1 boinc boinc 204736246 Oct 25 05:46 HITS.46771637._117333.pool.root.1
[2025-10-25 05:47:52] -rw-r--r-- 1 boinc boinc       529 Oct 25 05:46 boinc_task_state.xml
[2025-10-25 05:47:52] -rw------- 1 boinc boinc      1019 Oct 25 05:46 memory_monitor_summary.json
[2025-10-25 05:47:52] -rw------- 1 boinc boinc    261524 Oct 25 05:46 log.46771637._117333.job.log.tgz.1
[2025-10-25 05:47:52] -rw------- 1 boinc boinc        95 Oct 25 05:47 pilot_heartbeat.json
[2025-10-25 05:47:52] -rw------- 1 boinc boinc      7769 Oct 25 05:47 heartbeat.json
[2025-10-25 05:47:52] -rw-r--r-- 1 boinc boinc        27 Oct 25 05:47 wrapper_checkpoint.txt
[2025-10-25 05:47:52] -rw-r--r-- 1 boinc boinc      8192 Oct 25 05:47 boinc_mmap_file
[2025-10-25 05:47:52] -rw------- 1 boinc boinc      4824 Oct 25 05:47 pilotlog.txt
[2025-10-25 05:47:52] -rw------- 1 boinc boinc    687443 Oct 25 05:47 log.46771637._117333.job.log.1
[2025-10-25 05:47:52] -rw------- 1 boinc boinc       357 Oct 25 05:47 output.list
[2025-10-25 05:47:52] -rw-r--r-- 1 boinc boinc       620 Oct 25 05:47 runtime_log
[2025-10-25 05:47:52] -rw------- 1 boinc boinc    972800 Oct 25 05:47 result.tar.gz
[2025-10-25 05:47:52] -rw-r--r-- 1 boinc boinc      8777 Oct 25 05:47 runtime_log.err
[2025-10-25 05:47:52] -rw------- 1 boinc boinc       658 Oct 25 05:47 dcvLDmPhUW8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDm0WBODmKuGIom.diag
[2025-10-25 05:47:52] -rw-r--r-- 1 boinc boinc     11512 Oct 25 05:47 stderr.txt
[2025-10-25 05:47:52] HITS file was successfully produced:
[2025-10-25 05:47:52] -rw------- 1 boinc boinc 204736246 Oct 25 05:46 shared/HITS.pool.root.1
[2025-10-25 05:47:52]  *** Contents of shared directory: ***
[2025-10-25 05:47:52] total 423148
[2025-10-25 05:47:52] -rw-r--r-- 2 boinc boinc 226990386 Oct 25 04:29 ATLAS.root_0
[2025-10-25 05:47:52] -rw-r--r-- 2 boinc boinc    569678 Oct 25 04:29 input.tar.gz
[2025-10-25 05:47:52] -rw-r--r-- 2 boinc boinc     15120 Oct 25 04:29 start_atlas.sh
[2025-10-25 05:47:52] -rw------- 1 boinc boinc 204736246 Oct 25 05:46 HITS.pool.root.1
[2025-10-25 05:47:52] -rw------- 1 boinc boinc    972800 Oct 25 05:47 result.tar.gz
05:47:53 (3449708): run_atlas exited; CPU time 17565.477418
05:47:53 (3449708): called boinc_finish(0)

</stderr_txt>
]]>

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