Stderr output

<core_client_version>8.3.0</core_client_version>
<![CDATA[
<stderr_txt>
14:20:06 (20200): wrapper (7.7.26015): starting
14:20:06 (20200): wrapper: running run_atlas (--nthreads 8)
[2025-10-24 14:20:06] Arguments: --nthreads 8
[2025-10-24 14:20:06] Threads: 8
[2025-10-24 14:20:06] Checking for CVMFS
[2025-10-24 14:20:06] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-24 14:20:06] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-24 14:20:06] Running cvmfs_config stat atlas.cern.ch
[2025-10-24 14:20:06] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-24 14:20:06] 2.11.0.0 11956 17781 83312 152077 1 1 2298282 4096000 0 130560 0 7102185 99.846 2631005 1200 http://cvmfs-stratum-one.cern.ch/cvmfs/atlas.cern.ch http://141.99.253.245:3128 1
[2025-10-24 14:20:06] CVMFS is ok
[2025-10-24 14:20:06] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-24 14:20:06] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-24 14:20:06] Further information can be found at the LHC@home message board.
[2025-10-24 14:20:06] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-24 14:20:06] Checking for apptainer binary...
[2025-10-24 14:20:06] /usr/bin/which: no apptainer in (/opt/ohpc/pub/libs/singularity/3.7.1/bin:/cm/shared/apps/slurm/current/sbin:/cm/shared/apps/slurm/current/bin:/home/mf493845/.local/bin:/home/mf493845/bin:/usr/local/bin:/usr/bin:/usr/local/sbin:/usr/sbin)
[2025-10-24 14:20:06] apptainer is not installed, using version from CVMFS
[2025-10-24 14:20:06] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-24 14:20:31] WARNING: Environment variable TMPDIR already has value [/tmp/job_10717929/atlas/pilot/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment hpc-node058
[2025-10-24 14:20:31] apptainer works
[2025-10-24 14:20:31] Set ATHENA_PROC_NUMBER=8
[2025-10-24 14:20:31] Set ATHENA_CORE_NUMBER=8
[2025-10-24 14:20:31] Starting ATLAS job with PandaID=6855325654
[2025-10-24 14:20:31] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/tmp/job_10717929/atlas/pilot/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-24 15:38:28]  *** The last 200 lines of the pilot log: ***
[2025-10-24 15:38:28]  status=None
[2025-10-24 15:38:28]  status_code=0
[2025-10-24 15:38:28]  storage_token=
[2025-10-24 15:38:28]  surl=/tmp/job_10717929/atlas/pilot/slots/0/PanDA_Pilot-6855325654/log.46771637._115685.job.log.tgz.1
[2025-10-24 15:38:28]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/80/af/log.46771637._115685.job.log.tgz.1
[2025-10-24 15:38:28]  workdir=None
[2025-10-24 15:38:28] ]
[2025-10-24 15:38:28] 2025-10-24 13:37:17,133 | INFO     | transferring file log.46771637._115685.job.log.tgz.1 from /tmp/job_10717929/atlas/pilot/slots/0/PanDA_Pilot-6855325654/log.46771637._115685.job.log.tgz.1 to /tmp/j
[2025-10-24 15:38:28] 2025-10-24 13:37:17,133 | INFO     | executing command: /usr/bin/env mv /tmp/job_10717929/atlas/pilot/slots/0/PanDA_Pilot-6855325654/log.46771637._115685.job.log.tgz.1 /tmp/job_10717929/atlas/pilot/sl
[2025-10-24 15:38:28] 2025-10-24 13:37:17,143 | INFO     | adding to output.list: log.46771637._115685.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/80/af/log.46771637._115685.job.log.tg
[2025-10-24 15:38:28] 2025-10-24 13:37:17,144 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-10-24 15:38:28] 2025-10-24 13:37:17,144 | INFO     | summary of transferred files:
[2025-10-24 15:38:28] 2025-10-24 13:37:17,144 | INFO     |  -- lfn=log.46771637._115685.job.log.tgz.1, status_code=0, status=transferred
[2025-10-24 15:38:28] 2025-10-24 13:37:17,144 | INFO     | stage-out finished correctly
[2025-10-24 15:38:28] 2025-10-24 13:37:17,183 | INFO     | monitor loop #343: job 0:6855325654 is in state 'finished'
[2025-10-24 15:38:28] 2025-10-24 13:37:17,194 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-24 15:38:28] 2025-10-24 13:37:17,422 | INFO     | PID=29451 has CPU usage=6.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-10-24 15:38:28] 2025-10-24 13:37:17,422 | INFO     | .. there are 5 such processes running
[2025-10-24 15:38:28] 2025-10-24 13:37:18,422 | INFO     | time since job start (4563s) is within the limit (172800.0s)
[2025-10-24 15:38:28] 2025-10-24 13:37:19,159 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-10-24 15:38:28] 2025-10-24 13:37:19,701 | INFO     | monitor loop #344: job 0:6855325654 is in state 'finished'
[2025-10-24 15:38:28] 2025-10-24 13:37:19,701 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-24 15:38:28] 2025-10-24 13:37:20,428 | INFO     | time since job start (4565s) is within the limit (172800.0s)
[2025-10-24 15:38:28] 2025-10-24 13:37:20,648 | INFO     | job 6855325654 has state=finished
[2025-10-24 15:38:28] 2025-10-24 13:37:20,648 | INFO     | preparing for final server update for job 6855325654 in state='finished'
[2025-10-24 15:38:28] 2025-10-24 13:37:20,649 | INFO     | this job has now completed (state=finished)
[2025-10-24 15:38:28] 2025-10-24 13:37:20,649 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-10-24 15:38:28] 2025-10-24 13:37:20,649 | INFO     | log transfer has been attempted: DONE
[2025-10-24 15:38:28] 2025-10-24 13:37:20,649 | INFO     | job 6855325654 has finished - writing final server update
[2025-10-24 15:38:28] 2025-10-24 13:37:20,649 | INFO     | total number of processed events: 400 (read)
[2025-10-24 15:38:28] 2025-10-24 13:37:20,649 | INFO     | executing command: lscpu
[2025-10-24 15:38:28] 2025-10-24 13:37:20,685 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-10-24 15:38:28] 2025-10-24 13:37:22,204 | INFO     | monitor loop #345: job 0:6855325654 is in state 'finished'
[2025-10-24 15:38:28] 2025-10-24 13:37:22,204 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-24 15:38:28] 2025-10-24 13:37:22,432 | INFO     | time since job start (4567s) is within the limit (172800.0s)
[2025-10-24 15:38:28] 2025-10-24 13:37:22,863 | INFO     | CPU arch script returned: x86-64-v3
[2025-10-24 15:38:28] 2025-10-24 13:37:22,869 | INFO     | found 64 cores (32 cores per socket, 2 sockets) , CPU MHz: 2349.7523437499995
[2025-10-24 15:38:28] 2025-10-24 13:37:22,876 | INFO     | using path: /tmp/job_10717929/atlas/pilot/slots/0/PanDA_Pilot-6855325654/memory_monitor_summary.json (trf name=prmon)
[2025-10-24 15:38:28] 2025-10-24 13:37:22,877 | INFO     | extracted standard info from prmon json
[2025-10-24 15:38:28] 2025-10-24 13:37:22,877 | INFO     | extracted standard memory fields from prmon json
[2025-10-24 15:38:28] 2025-10-24 13:37:22,877 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-24 15:38:28] 2025-10-24 13:37:22,877 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-24 15:38:28] 2025-10-24 13:37:22,877 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-24 15:38:28] 2025-10-24 13:37:22,879 | INFO     | fitting pss+swap vs Time
[2025-10-24 15:38:28] 2025-10-24 13:37:22,879 | INFO     | sum of square deviations: 97479037.0
[2025-10-24 15:38:28] 2025-10-24 13:37:22,879 | INFO     | sum of deviations: 7309817880.0
[2025-10-24 15:38:28] 2025-10-24 13:37:22,879 | INFO     | mean x: 1761310867.5
[2025-10-24 15:38:28] 2025-10-24 13:37:22,879 | INFO     | mean y: 2465281.0
[2025-10-24 15:38:28] 2025-10-24 13:37:22,879 | INFO     | -- intersect: -132075795519.72797
[2025-10-24 15:38:28] 2025-10-24 13:37:22,879 | INFO     | intersect: -132075795519.72797
[2025-10-24 15:38:28] 2025-10-24 13:37:22,879 | INFO     | chi2: 0.2995067257018976
[2025-10-24 15:38:28] 2025-10-24 13:37:22,880 | INFO     | -- intersect: -132075795519.72797
[2025-10-24 15:38:28] 2025-10-24 13:37:22,880 | INFO     | current memory leak: 74.99 B/s (using 68 data points, chi2=0.30)
[2025-10-24 15:38:28] 2025-10-24 13:37:22,880 | INFO     | could have reported an average CPU frequency of 2349 MHz (6 samples)
[2025-10-24 15:38:28] 2025-10-24 13:37:22,880 | INFO     | ..............................
[2025-10-24 15:38:28] 2025-10-24 13:37:22,880 | INFO     | . Timing measurements:
[2025-10-24 15:38:28] 2025-10-24 13:37:22,880 | INFO     | . get job = 0 s
[2025-10-24 15:38:28] 2025-10-24 13:37:22,880 | INFO     | . initial setup = 4 s
[2025-10-24 15:38:28] 2025-10-24 13:37:22,880 | INFO     | . payload setup = 26 s
[2025-10-24 15:38:28] 2025-10-24 13:37:22,880 | INFO     | . stage-in = 0 s
[2025-10-24 15:38:28] 2025-10-24 13:37:22,880 | INFO     | . payload execution = 4517 s
[2025-10-24 15:38:28] 2025-10-24 13:37:22,880 | INFO     | . stage-out = 0 s
[2025-10-24 15:38:28] 2025-10-24 13:37:22,880 | INFO     | . log creation = 0 s
[2025-10-24 15:38:28] 2025-10-24 13:37:22,880 | INFO     | ..............................
[2025-10-24 15:38:28] 2025-10-24 13:37:22,950 | INFO     | 
[2025-10-24 15:38:28] 2025-10-24 13:37:22,950 | INFO     | job summary report
[2025-10-24 15:38:28] 2025-10-24 13:37:22,950 | INFO     | --------------------------------------------------
[2025-10-24 15:38:28] 2025-10-24 13:37:22,950 | INFO     | PanDA job id: 6855325654
[2025-10-24 15:38:28] 2025-10-24 13:37:22,950 | INFO     | task id: 46771637
[2025-10-24 15:38:28] 2025-10-24 13:37:22,951 | INFO     | errors: (none)
[2025-10-24 15:38:28] 2025-10-24 13:37:22,951 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-24 15:38:28] 2025-10-24 13:37:22,951 | INFO     | pilot state: finished 
[2025-10-24 15:38:28] 2025-10-24 13:37:22,951 | INFO     | transexitcode: 0
[2025-10-24 15:38:28] 2025-10-24 13:37:22,951 | INFO     | exeerrorcode: 0
[2025-10-24 15:38:28] 2025-10-24 13:37:22,951 | INFO     | exeerrordiag: 
[2025-10-24 15:38:28] 2025-10-24 13:37:22,951 | INFO     | exitcode: 0
[2025-10-24 15:38:28] 2025-10-24 13:37:22,951 | INFO     | exitmsg: OK
[2025-10-24 15:38:28] 2025-10-24 13:37:22,951 | INFO     | cpuconsumptiontime: 30059 s
[2025-10-24 15:38:28] 2025-10-24 13:37:22,951 | INFO     | nevents: 400
[2025-10-24 15:38:28] 2025-10-24 13:37:22,951 | INFO     | neventsw: 0
[2025-10-24 15:38:28] 2025-10-24 13:37:22,951 | INFO     | pid: 12328
[2025-10-24 15:38:28] 2025-10-24 13:37:22,951 | INFO     | pgrp: 12328
[2025-10-24 15:38:28] 2025-10-24 13:37:22,951 | INFO     | corecount: 8
[2025-10-24 15:38:28] 2025-10-24 13:37:22,951 | INFO     | event service: False
[2025-10-24 15:38:28] 2025-10-24 13:37:22,951 | INFO     | sizes: {0: 2349061, 3: 2349323, 11: 2349351, 4547: 2375515, 4548: 2384598, 4550: 2384598, 4554: 2384920}
[2025-10-24 15:38:28] 2025-10-24 13:37:22,951 | INFO     | --------------------------------------------------
[2025-10-24 15:38:28] 2025-10-24 13:37:22,951 | INFO     | 
[2025-10-24 15:38:28] 2025-10-24 13:37:22,951 | INFO     | executing command: ls -lF /tmp/job_10717929/atlas/pilot/slots/0
[2025-10-24 15:38:28] 2025-10-24 13:37:22,963 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-24 15:38:28] 2025-10-24 13:37:22,963 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-24 15:38:28] 2025-10-24 13:37:22,963 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-24 15:38:28] 2025-10-24 13:37:22,963 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-24 15:38:28] 2025-10-24 13:37:22,963 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-24 15:38:28] 2025-10-24 13:37:22,963 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-24 15:38:28] 2025-10-24 13:37:22,963 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-24 15:38:28] 2025-10-24 13:37:22,963 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-24 15:38:28] 2025-10-24 13:37:22,963 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-24 15:38:28] 2025-10-24 13:37:22,963 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-24 15:38:28] 2025-10-24 13:37:22,963 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-24 15:38:28] 2025-10-24 13:37:22,963 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-24 15:38:28] 2025-10-24 13:37:22,963 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-24 15:38:28] 2025-10-24 13:37:22,963 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-24 15:38:28] 2025-10-24 13:37:22,963 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-24 15:38:28] 2025-10-24 13:37:22,963 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-24 15:38:28] 2025-10-24 13:37:22,964 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-24 15:38:28] 2025-10-24 13:37:22,964 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-24 15:38:28] 2025-10-24 13:37:22,964 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-24 15:38:28] 2025-10-24 13:37:22,964 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-24 15:38:28] 2025-10-24 13:37:22,964 | INFO     | job 6855325654 has completed (purged errors)
[2025-10-24 15:38:28] 2025-10-24 13:37:22,964 | INFO     | overall cleanup function is called
[2025-10-24 15:38:28] 2025-10-24 13:37:23,970 | INFO     | --- collectZombieJob: --- 10, [12328]
[2025-10-24 15:38:28] 2025-10-24 13:37:23,970 | INFO     | zombie collector waiting for pid 12328
[2025-10-24 15:38:28] 2025-10-24 13:37:23,970 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-24 15:38:28] 2025-10-24 13:37:23,970 | INFO     | collected zombie processes
[2025-10-24 15:38:28] 2025-10-24 13:37:23,970 | INFO     | will attempt to kill all subprocesses of pid=12328
[2025-10-24 15:38:28] 2025-10-24 13:37:24,117 | INFO     | process IDs to be killed: [12328] (in reverse order)
[2025-10-24 15:38:28] 2025-10-24 13:37:24,164 | WARNING  | found no corresponding commands to process id(s)
[2025-10-24 15:38:28] 2025-10-24 13:37:24,164 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-24 15:38:28] 2025-10-24 13:37:24,169 | INFO     | did not find any defunct processes belonging to 12328
[2025-10-24 15:38:28] 2025-10-24 13:37:24,174 | INFO     | did not find any defunct processes belonging to 12328
[2025-10-24 15:38:28] 2025-10-24 13:37:24,174 | INFO     | ready for new job
[2025-10-24 15:38:28] 2025-10-24 13:37:24,174 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-24 15:38:28] 2025-10-24 13:37:24,175 | INFO     | ***************************************
[2025-10-24 15:38:28] 2025-10-24 13:37:24,175 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-24 15:38:28] 2025-10-24 13:37:24,175 | INFO     | ***************************************
[2025-10-24 15:38:28] 2025-10-24 13:37:24,175 | INFO     | 
[2025-10-24 15:38:28] 2025-10-24 13:37:24,190 | INFO     | architecture information:
[2025-10-24 15:38:28] 2025-10-24 13:37:24,190 | INFO     | executing command: cat /etc/os-release
[2025-10-24 15:38:28] 2025-10-24 13:37:24,198 | INFO     | cat /etc/os-release:
[2025-10-24 15:38:28] NAME="CentOS Linux"
[2025-10-24 15:38:28] VERSION="7 (Core)"
[2025-10-24 15:38:28] ID="centos"
[2025-10-24 15:38:28] ID_LIKE="rhel fedora"
[2025-10-24 15:38:28] VERSION_ID="7"
[2025-10-24 15:38:28] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-24 15:38:28] ANSI_COLOR="0;31"
[2025-10-24 15:38:28] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-24 15:38:28] HOME_URL="https://www.centos.org/"
[2025-10-24 15:38:28] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-24 15:38:28] 
[2025-10-24 15:38:28] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-24 15:38:28] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-24 15:38:28] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-24 15:38:28] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-24 15:38:28] 
[2025-10-24 15:38:28] 2025-10-24 13:37:24,198 | INFO     | ***************************************
[2025-10-24 15:38:28] 2025-10-24 13:37:24,700 | INFO     | executing command: df -mP /tmp/job_10717929/atlas/pilot/slots/0
[2025-10-24 15:38:28] 2025-10-24 13:37:24,708 | INFO     | sufficient remaining disk space (224295649280 B)
[2025-10-24 15:38:28] 2025-10-24 13:37:24,708 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-24 15:38:28] 2025-10-24 13:37:24,708 | INFO     | current server update state: UPDATING_FINAL
[2025-10-24 15:38:28] 2025-10-24 13:37:24,708 | INFO     | update_server=False
[2025-10-24 15:38:28] 2025-10-24 13:37:24,708 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-24 15:38:28] 2025-10-24 13:37:24,709 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-24 15:38:28] 2025-10-24 13:37:24,944 | INFO     | all payload control threads have been joined
[2025-10-24 15:38:28] 2025-10-24 13:37:25,227 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-24 15:38:28] 2025-10-24 13:37:25,232 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-24 15:38:28] 2025-10-24 13:37:25,263 | INFO     | all job control threads have been joined
[2025-10-24 15:38:28] 2025-10-24 13:37:25,363 | INFO     | all data control threads have been joined
[2025-10-24 15:38:28] 2025-10-24 13:37:25,712 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-24 15:38:28] 2025-10-24 13:37:25,712 | INFO     | aborting loop
[2025-10-24 15:38:28] 2025-10-24 13:37:25,714 | INFO     | [job] retrieve thread has finished
[2025-10-24 15:38:28] 2025-10-24 13:37:25,714 | INFO     | [job] queue monitor thread has finished
[2025-10-24 15:38:28] 2025-10-24 13:37:25,945 | INFO     | [payload] control thread has finished
[2025-10-24 15:38:28] 2025-10-24 13:37:26,269 | INFO     | [job] control thread has finished
[2025-10-24 15:38:28] 2025-10-24 13:37:26,357 | INFO     | [payload] execute_payloads thread has finished
[2025-10-24 15:38:28] 2025-10-24 13:37:26,368 | INFO     | [data] control thread has finished
[2025-10-24 15:38:28] 2025-10-24 13:37:26,717 | INFO     | [job] job monitor thread has finished
[2025-10-24 15:38:28] 2025-10-24 13:37:26,774 | INFO     | [data] copytool_in thread has finished
[2025-10-24 15:38:28] 2025-10-24 13:37:26,820 | INFO     | [payload] failed_post thread has finished
[2025-10-24 15:38:28] 2025-10-24 13:37:26,930 | INFO     | [job] validate thread has finished
[2025-10-24 15:38:28] 2025-10-24 13:37:27,048 | INFO     | [job] create_data_payload thread has finished
[2025-10-24 15:38:28] 2025-10-24 13:37:27,213 | INFO     | [payload] validate_pre thread has finished
[2025-10-24 15:38:28] 2025-10-24 13:37:27,232 | INFO     | [data] copytool_out thread has finished
[2025-10-24 15:38:28] 2025-10-24 13:37:27,242 | INFO     | [payload] validate_post thread has finished
[2025-10-24 15:38:28] 2025-10-24 13:37:29,237 | INFO     | [data] queue_monitor thread has finished
[2025-10-24 15:38:28] 2025-10-24 13:37:35,674 | INFO     | job.realtimelogging is not enabled
[2025-10-24 15:38:28] 2025-10-24 13:37:36,679 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-24 15:38:28] 2025-10-24 13:37:55,674 | INFO     | PID=29451 has CPU usage=1.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-10-24 15:38:28] 2025-10-24 13:37:55,674 | INFO     | .. there are 5 such processes running
[2025-10-24 15:38:28] 2025-10-24 13:37:55,675 | INFO     | found 0 job(s) in 20 queues
[2025-10-24 15:38:28] 2025-10-24 13:37:55,675 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-24 15:38:28] 2025-10-24 13:37:55,675 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-24 15:38:28] 2025-10-24 13:38:22,416 | INFO     | [monitor] cgroup control has ended
[2025-10-24 15:38:28] 2025-10-24 13:38:22,823 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 23456247945024)>', '<ExcThread(monitor, started 23456060466944)>']
[2025-10-24 15:38:28] 2025-10-24 13:38:23,813 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-24 15:38:28] 2025-10-24 13:38:23,813 | INFO     | [monitor] control thread has ended
[2025-10-24 15:38:28] 2025-10-24 13:38:27,848 | INFO     | all workflow threads have been joined
[2025-10-24 15:38:28] 2025-10-24 13:38:27,848 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-24 15:38:28] 2025-10-24 13:38:27,848 | INFO     | traces error code: 0
[2025-10-24 15:38:28] 2025-10-24 13:38:27,848 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-24 15:38:28] 2025-10-24 13:38:27,911 [wrapper] ==== pilot stdout END ====
[2025-10-24 15:38:28] 2025-10-24 13:38:27,913 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-24 15:38:28] 2025-10-24 13:38:27,915 [wrapper] pilotpid: 29451
[2025-10-24 15:38:28] 2025-10-24 13:38:27,917 [wrapper] Pilot exit status: 0
[2025-10-24 15:38:28] 2025-10-24 13:38:27,921 [wrapper] pandaids: 6855325654
[2025-10-24 15:38:28] 2025-10-24 13:38:27,953 [wrapper] cleanup supervisor_pilot 15143 29453
[2025-10-24 15:38:28] 2025-10-24 13:38:27,955 [wrapper] Test setup, not cleaning
[2025-10-24 15:38:28] 2025-10-24 13:38:27,956 [wrapper] apfmon messages muted
[2025-10-24 15:38:28] 2025-10-24 13:38:27,958 [wrapper] ==== wrapper stdout END ====
[2025-10-24 15:38:28] 2025-10-24 13:38:27,959 [wrapper] ==== wrapper stderr END ====
[2025-10-24 15:38:28]  *** Error codes and diagnostics ***
[2025-10-24 15:38:28]     "exeErrorCode": 0,
[2025-10-24 15:38:28]     "exeErrorDiag": "",
[2025-10-24 15:38:28]     "pilotErrorCode": 0,
[2025-10-24 15:38:28]     "pilotErrorDiag": "",
[2025-10-24 15:38:28]  *** Listing of results directory ***
[2025-10-24 15:38:28] total 426164
[2025-10-24 15:38:28] -rw------- 1 mf493845 unix-user    557409 Oct 24 03:29 pilot3.tar.gz
[2025-10-24 15:38:28] -rw------- 1 mf493845 unix-user      5112 Oct 24 03:56 queuedata.json
[2025-10-24 15:38:28] -rwx------ 1 mf493845 unix-user     36292 Oct 24 03:58 runpilot2-wrapper.sh
[2025-10-24 15:38:28] -rw------- 1 mf493845 unix-user       100 Oct 24 13:22 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-24 15:38:28] -rwxr-xr-x 1 mf493845 unix-user      7986 Oct 24 13:22 run_atlas
[2025-10-24 15:38:28] -rw------- 1 mf493845 unix-user       105 Oct 24 13:22 job.xml
[2025-10-24 15:38:28] -rw-r--r-- 2 mf493845 unix-user     15120 Oct 24 14:20 start_atlas.sh
[2025-10-24 15:38:28] drwxrwx--x 2 mf493845 unix-user       100 Oct 24 14:20 shared
[2025-10-24 15:38:28] -rw-r--r-- 2 mf493845 unix-user    569690 Oct 24 14:20 input.tar.gz
[2025-10-24 15:38:28] -rw------- 1 mf493845 unix-user      6392 Oct 24 14:20 init_data.xml
[2025-10-24 15:38:28] -rw-r--r-- 2 mf493845 unix-user 226119190 Oct 24 14:20 EVNT.46771634._004615.pool.root.1
[2025-10-24 15:38:28] -rw------- 1 mf493845 unix-user         0 Oct 24 14:20 boinc_setup_complete
[2025-10-24 15:38:28] -rw------- 1 mf493845 unix-user      8192 Oct 24 14:20 boinc_mmap_file
[2025-10-24 15:38:28] -rw------- 1 mf493845 unix-user         0 Oct 24 14:20 boinc_lockfile
[2025-10-24 15:38:28] -rw------- 1 mf493845 unix-user      2562 Oct 24 14:20 pandaJob.out
[2025-10-24 15:38:28] -rw------- 1 mf493845 unix-user    978572 Oct 24 14:21 agis_schedconf.cvmfs.json
[2025-10-24 15:38:28] -rw------- 1 mf493845 unix-user   1560740 Oct 24 14:21 agis_ddmendpoints.agis.ALL.json
[2025-10-24 15:38:28] drwx------ 5 mf493845 unix-user       440 Oct 24 14:21 pilot3
[2025-10-24 15:38:28] -rw------- 1 mf493845 unix-user 204366987 Oct 24 15:36 HITS.46771637._115685.pool.root.1
[2025-10-24 15:38:28] -rw------- 1 mf493845 unix-user      1019 Oct 24 15:37 memory_monitor_summary.json
[2025-10-24 15:38:28] -rw------- 1 mf493845 unix-user    321699 Oct 24 15:37 log.46771637._115685.job.log.tgz.1
[2025-10-24 15:38:28] -rw------- 1 mf493845 unix-user      7775 Oct 24 15:37 heartbeat.json
[2025-10-24 15:38:28] -rw------- 1 mf493845 unix-user        95 Oct 24 15:37 pilot_heartbeat.json
[2025-10-24 15:38:28] -rw------- 1 mf493845 unix-user      4907 Oct 24 15:38 pilotlog.txt
[2025-10-24 15:38:28] -rw------- 1 mf493845 unix-user    689190 Oct 24 15:38 log.46771637._115685.job.log.1
[2025-10-24 15:38:28] -rw------- 1 mf493845 unix-user       357 Oct 24 15:38 output.list
[2025-10-24 15:38:28] -rw------- 1 mf493845 unix-user       620 Oct 24 15:38 runtime_log
[2025-10-24 15:38:28] -rw------- 1 mf493845 unix-user   1034240 Oct 24 15:38 result.tar.gz
[2025-10-24 15:38:28] -rw------- 1 mf493845 unix-user      9076 Oct 24 15:38 runtime_log.err
[2025-10-24 15:38:28] -rw------- 1 mf493845 unix-user       644 Oct 24 15:38 n8tMDmRFMW8n9Rq4apOajLDm4fhM0noT9bVof3QYDmxSkMDmbaSTfn.diag
[2025-10-24 15:38:28] -rw------- 1 mf493845 unix-user     22525 Oct 24 15:38 stderr.txt
[2025-10-24 15:38:28] HITS file was successfully produced:
[2025-10-24 15:38:28] -rw------- 1 mf493845 unix-user 204366987 Oct 24 15:36 shared/HITS.pool.root.1
[2025-10-24 15:38:28]  *** Contents of shared directory: ***
[2025-10-24 15:38:28] total 421988
[2025-10-24 15:38:28] -rw-r--r-- 2 mf493845 unix-user     15120 Oct 24 14:20 start_atlas.sh
[2025-10-24 15:38:28] -rw-r--r-- 2 mf493845 unix-user    569690 Oct 24 14:20 input.tar.gz
[2025-10-24 15:38:28] -rw-r--r-- 2 mf493845 unix-user 226119190 Oct 24 14:20 ATLAS.root_0
[2025-10-24 15:38:28] -rw------- 1 mf493845 unix-user 204366987 Oct 24 15:36 HITS.pool.root.1
[2025-10-24 15:38:28] -rw------- 1 mf493845 unix-user   1034240 Oct 24 15:38 result.tar.gz
15:38:29 (20200): run_atlas exited; CPU time 30156.710960
15:38:29 (20200): called boinc_finish(0)

</stderr_txt>
]]>

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