Stderr output

<core_client_version>8.0.4</core_client_version>
<![CDATA[
<stderr_txt>
00:11:38 (3215685): wrapper (7.7.26015): starting
00:11:38 (3215685): wrapper: running run_atlas (--nthreads 3)
[2025-10-25 00:11:38] Arguments: --nthreads 3
[2025-10-25 00:11:38] Threads: 3
[2025-10-25 00:11:38] Checking for CVMFS
[2025-10-25 00:11:38] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-25 00:11:38] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-25 00:11:38] Running cvmfs_config stat atlas.cern.ch
[2025-10-25 00:11:38] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-25 00:11:38] 2.9.2.0 1615638 5512 85080 152097 3 56 24582860 36864000 0 130560 0 4195997 99.989 212581 921 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-10-25 00:11:38] CVMFS is ok
[2025-10-25 00:11:38] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-25 00:11:38] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-25 00:11:38] Further information can be found at the LHC@home message board.
[2025-10-25 00:11:38] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-25 00:11:38] Checking for apptainer binary...
[2025-10-25 00:11:38] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-25 00:11:38] Running /usr/bin/apptainer --version
[2025-10-25 00:11:38] apptainer version 1.3.6-4.2
[2025-10-25 00:11:38] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-25 00:11:38] thA325b
[2025-10-25 00:11:38] apptainer works
[2025-10-25 00:11:38] Set ATHENA_PROC_NUMBER=3
[2025-10-25 00:11:38] Set ATHENA_CORE_NUMBER=3
[2025-10-25 00:11:38] Starting ATLAS job with PandaID=6857388952
[2025-10-25 00:11:38] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-25 01:44:55]  *** The last 200 lines of the pilot log: ***
[2025-10-25 01:44:55]  status=None
[2025-10-25 01:44:55]  status_code=0
[2025-10-25 01:44:55]  storage_token=
[2025-10-25 01:44:55]  surl=/local/data/boinc/slots/0/PanDA_Pilot-6857388952/log.46964913._000265.job.log.tgz.1
[2025-10-25 01:44:55]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/5b/1c/log.46964913._000265.job.log.tgz.1
[2025-10-25 01:44:55]  workdir=None
[2025-10-25 01:44:55] ]
[2025-10-25 01:44:55] 2025-10-24 23:43:47,050 | INFO     | transferring file log.46964913._000265.job.log.tgz.1 from /local/data/boinc/slots/0/PanDA_Pilot-6857388952/log.46964913._000265.job.log.tgz.1 to /local/data/boinc/
[2025-10-25 01:44:55] 2025-10-24 23:43:47,050 | INFO     | executing command: /usr/bin/env mv /local/data/boinc/slots/0/PanDA_Pilot-6857388952/log.46964913._000265.job.log.tgz.1 /local/data/boinc/slots/0/log.46964913._0002
[2025-10-25 01:44:55] 2025-10-24 23:43:47,062 | INFO     | adding to output.list: log.46964913._000265.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/5b/1c/log.46964913._000265.job.log.tg
[2025-10-25 01:44:55] 2025-10-24 23:43:47,062 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-10-25 01:44:55] 2025-10-24 23:43:47,062 | INFO     | summary of transferred files:
[2025-10-25 01:44:55] 2025-10-24 23:43:47,062 | INFO     |  -- lfn=log.46964913._000265.job.log.tgz.1, status_code=0, status=transferred
[2025-10-25 01:44:55] 2025-10-24 23:43:47,063 | INFO     | stage-out finished correctly
[2025-10-25 01:44:55] 2025-10-24 23:43:47,092 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-10-25 01:44:55] 2025-10-24 23:43:48,094 | WARNING  | process 3225839 can no longer be monitored (due to stat problems) - aborting
[2025-10-25 01:44:55] 2025-10-24 23:43:48,094 | INFO     | using path: /local/data/boinc/slots/0/PanDA_Pilot-6857388952/memory_monitor_summary.json (trf name=prmon)
[2025-10-25 01:44:55] 2025-10-24 23:43:48,095 | INFO     | reaping zombies for max 20 seconds
[2025-10-25 01:44:55] 2025-10-24 23:43:48,101 | INFO     | checking for looping job (in state=finished)
[2025-10-25 01:44:55] 2025-10-24 23:43:48,101 | INFO     | using looping job limit: 7200 s
[2025-10-25 01:44:55] 2025-10-24 23:43:48,138 | INFO     | number of running child processes to parent process 3225839: 1
[2025-10-25 01:44:55] 2025-10-24 23:43:48,138 | INFO     | maximum number of monitored processes: 6
[2025-10-25 01:44:55] 2025-10-24 23:43:48,551 | INFO     | time since job start (5524s) is within the limit (172800.0s)
[2025-10-25 01:44:55] 2025-10-24 23:43:49,543 | INFO     | job 6857388952 has state=finished
[2025-10-25 01:44:55] 2025-10-24 23:43:49,544 | INFO     | preparing for final server update for job 6857388952 in state='finished'
[2025-10-25 01:44:55] 2025-10-24 23:43:49,544 | INFO     | this job has now completed (state=finished)
[2025-10-25 01:44:55] 2025-10-24 23:43:49,544 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-10-25 01:44:55] 2025-10-24 23:43:49,544 | INFO     | log transfer has been attempted: DONE
[2025-10-25 01:44:55] 2025-10-24 23:43:49,544 | INFO     | job 6857388952 has finished - writing final server update
[2025-10-25 01:44:55] 2025-10-24 23:43:49,544 | INFO     | total number of processed events: 400 (read)
[2025-10-25 01:44:55] 2025-10-24 23:43:49,545 | INFO     | executing command: lscpu
[2025-10-25 01:44:55] 2025-10-24 23:43:49,559 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-10-25 01:44:55] 2025-10-24 23:43:50,557 | INFO     | time since job start (5526s) is within the limit (172800.0s)
[2025-10-25 01:44:55] 2025-10-24 23:43:50,640 | INFO     | monitor loop #424: job 0:6857388952 is in state 'finished'
[2025-10-25 01:44:55] 2025-10-24 23:43:50,640 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-25 01:44:55] 2025-10-24 23:43:51,636 | INFO     | PID=3219406 has CPU usage=3.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-25 01:44:55] 2025-10-24 23:43:51,739 | INFO     | CPU arch script returned: x86-64-v3
[2025-10-25 01:44:55] 2025-10-24 23:43:51,740 | INFO     | found 6 cores (6 cores per socket, 1 socket) HT, CPU MHz: 3318.8331666666672
[2025-10-25 01:44:55] 2025-10-24 23:43:51,741 | INFO     | using path: /local/data/boinc/slots/0/PanDA_Pilot-6857388952/memory_monitor_summary.json (trf name=prmon)
[2025-10-25 01:44:55] 2025-10-24 23:43:51,741 | INFO     | extracted standard info from prmon json
[2025-10-25 01:44:55] 2025-10-24 23:43:51,741 | INFO     | extracted standard memory fields from prmon json
[2025-10-25 01:44:55] 2025-10-24 23:43:51,741 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-25 01:44:55] 2025-10-24 23:43:51,741 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-25 01:44:55] 2025-10-24 23:43:51,741 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-25 01:44:55] 2025-10-24 23:43:51,742 | INFO     | fitting pss+swap vs Time
[2025-10-25 01:44:55] 2025-10-24 23:43:51,742 | INFO     | sum of square deviations: 183761585.0
[2025-10-25 01:44:55] 2025-10-24 23:43:51,742 | INFO     | sum of deviations: -2902439596.9999995
[2025-10-25 01:44:55] 2025-10-24 23:43:51,742 | INFO     | mean x: 1761346759.5
[2025-10-25 01:44:55] 2025-10-24 23:43:51,742 | INFO     | mean y: 2425128.095238095
[2025-10-25 01:44:55] 2025-10-24 23:43:51,742 | INFO     | -- intersect: 27822181791.711494
[2025-10-25 01:44:55] 2025-10-24 23:43:51,742 | INFO     | intersect: 27822181791.711494
[2025-10-25 01:44:55] 2025-10-24 23:43:51,742 | INFO     | chi2: 0.02175456237931954
[2025-10-25 01:44:55] 2025-10-24 23:43:51,742 | INFO     | -- intersect: 27822181791.711494
[2025-10-25 01:44:55] 2025-10-24 23:43:51,742 | INFO     | current memory leak: -15.79 B/s (using 84 data points, chi2=0.02)
[2025-10-25 01:44:55] 2025-10-24 23:43:51,742 | INFO     | could have reported an average CPU frequency of 3835 MHz (7 samples)
[2025-10-25 01:44:55] 2025-10-24 23:43:51,743 | INFO     | ..............................
[2025-10-25 01:44:55] 2025-10-24 23:43:51,743 | INFO     | . Timing measurements:
[2025-10-25 01:44:55] 2025-10-24 23:43:51,743 | INFO     | . get job = 0 s
[2025-10-25 01:44:55] 2025-10-24 23:43:51,743 | INFO     | . initial setup = 1 s
[2025-10-25 01:44:55] 2025-10-24 23:43:51,743 | INFO     | . payload setup = 2 s
[2025-10-25 01:44:55] 2025-10-24 23:43:51,743 | INFO     | . stage-in = 0 s
[2025-10-25 01:44:55] 2025-10-24 23:43:51,743 | INFO     | . payload execution = 5503 s
[2025-10-25 01:44:55] 2025-10-24 23:43:51,743 | INFO     | . stage-out = 0 s
[2025-10-25 01:44:55] 2025-10-24 23:43:51,743 | INFO     | . log creation = 0 s
[2025-10-25 01:44:55] 2025-10-24 23:43:51,743 | INFO     | ..............................
[2025-10-25 01:44:55] 2025-10-24 23:43:52,210 | INFO     | 
[2025-10-25 01:44:55] 2025-10-24 23:43:52,210 | INFO     | job summary report
[2025-10-25 01:44:55] 2025-10-24 23:43:52,210 | INFO     | --------------------------------------------------
[2025-10-25 01:44:55] 2025-10-24 23:43:52,210 | INFO     | PanDA job id: 6857388952
[2025-10-25 01:44:55] 2025-10-24 23:43:52,210 | INFO     | task id: 46964913
[2025-10-25 01:44:55] 2025-10-24 23:43:52,210 | INFO     | errors: (none)
[2025-10-25 01:44:55] 2025-10-24 23:43:52,210 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-25 01:44:55] 2025-10-24 23:43:52,210 | INFO     | pilot state: finished 
[2025-10-25 01:44:55] 2025-10-24 23:43:52,210 | INFO     | transexitcode: 0
[2025-10-25 01:44:55] 2025-10-24 23:43:52,210 | INFO     | exeerrorcode: 0
[2025-10-25 01:44:55] 2025-10-24 23:43:52,210 | INFO     | exeerrordiag: 
[2025-10-25 01:44:55] 2025-10-24 23:43:52,211 | INFO     | exitcode: 0
[2025-10-25 01:44:55] 2025-10-24 23:43:52,211 | INFO     | exitmsg: OK
[2025-10-25 01:44:55] 2025-10-24 23:43:52,211 | INFO     | cpuconsumptiontime: 15881 s
[2025-10-25 01:44:55] 2025-10-24 23:43:52,211 | INFO     | nevents: 400
[2025-10-25 01:44:55] 2025-10-24 23:43:52,211 | INFO     | neventsw: 0
[2025-10-25 01:44:55] 2025-10-24 23:43:52,211 | INFO     | pid: 3225839
[2025-10-25 01:44:55] 2025-10-24 23:43:52,211 | INFO     | pgrp: 3225839
[2025-10-25 01:44:55] 2025-10-24 23:43:52,211 | INFO     | corecount: 3
[2025-10-25 01:44:55] 2025-10-24 23:43:52,211 | INFO     | event service: False
[2025-10-25 01:44:55] 2025-10-24 23:43:52,211 | INFO     | sizes: {0: 2348760, 1: 2348959, 3: 2349221, 11: 2349249, 5510: 2385035, 5515: 2385173}
[2025-10-25 01:44:55] 2025-10-24 23:43:52,211 | INFO     | --------------------------------------------------
[2025-10-25 01:44:55] 2025-10-24 23:43:52,211 | INFO     | 
[2025-10-25 01:44:55] 2025-10-24 23:43:52,211 | INFO     | executing command: ls -lF /local/data/boinc/slots/0
[2025-10-25 01:44:55] 2025-10-24 23:43:52,225 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-25 01:44:55] 2025-10-24 23:43:52,225 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-25 01:44:55] 2025-10-24 23:43:52,225 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-25 01:44:55] 2025-10-24 23:43:52,225 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-25 01:44:55] 2025-10-24 23:43:52,225 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-25 01:44:55] 2025-10-24 23:43:52,225 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-25 01:44:55] 2025-10-24 23:43:52,225 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-25 01:44:55] 2025-10-24 23:43:52,225 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-25 01:44:55] 2025-10-24 23:43:52,225 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-25 01:44:55] 2025-10-24 23:43:52,225 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-25 01:44:55] 2025-10-24 23:43:52,225 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-25 01:44:55] 2025-10-24 23:43:52,225 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-25 01:44:55] 2025-10-24 23:43:52,225 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-25 01:44:55] 2025-10-24 23:43:52,225 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-25 01:44:55] 2025-10-24 23:43:52,225 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-25 01:44:55] 2025-10-24 23:43:52,225 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-25 01:44:55] 2025-10-24 23:43:52,225 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-25 01:44:55] 2025-10-24 23:43:52,225 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-25 01:44:55] 2025-10-24 23:43:52,225 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-25 01:44:55] 2025-10-24 23:43:52,225 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-25 01:44:55] 2025-10-24 23:43:52,225 | INFO     | job 6857388952 has completed (purged errors)
[2025-10-25 01:44:55] 2025-10-24 23:43:52,225 | INFO     | overall cleanup function is called
[2025-10-25 01:44:55] 2025-10-24 23:43:53,232 | INFO     | --- collectZombieJob: --- 10, [3225839]
[2025-10-25 01:44:55] 2025-10-24 23:43:53,232 | INFO     | zombie collector waiting for pid 3225839
[2025-10-25 01:44:55] 2025-10-24 23:43:53,232 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-25 01:44:55] 2025-10-24 23:43:53,232 | INFO     | collected zombie processes
[2025-10-25 01:44:55] 2025-10-24 23:43:53,232 | INFO     | will attempt to kill all subprocesses of pid=3225839
[2025-10-25 01:44:55] 2025-10-24 23:43:53,271 | INFO     | process IDs to be killed: [3225839] (in reverse order)
[2025-10-25 01:44:55] 2025-10-24 23:43:53,294 | WARNING  | found no corresponding commands to process id(s)
[2025-10-25 01:44:55] 2025-10-24 23:43:53,294 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-25 01:44:55] 2025-10-24 23:43:53,295 | INFO     | did not find any defunct processes belonging to 3225839
[2025-10-25 01:44:55] 2025-10-24 23:43:53,297 | INFO     | did not find any defunct processes belonging to 3225839
[2025-10-25 01:44:55] 2025-10-24 23:43:53,297 | INFO     | ready for new job
[2025-10-25 01:44:55] 2025-10-24 23:43:53,297 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-25 01:44:55] 2025-10-24 23:43:53,297 | INFO     | ***************************************
[2025-10-25 01:44:55] 2025-10-24 23:43:53,298 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-25 01:44:55] 2025-10-24 23:43:53,298 | INFO     | ***************************************
[2025-10-25 01:44:55] 2025-10-24 23:43:53,298 | INFO     | 
[2025-10-25 01:44:55] 2025-10-24 23:43:53,298 | INFO     | architecture information:
[2025-10-25 01:44:55] 2025-10-24 23:43:53,298 | INFO     | executing command: cat /etc/os-release
[2025-10-25 01:44:55] 2025-10-24 23:43:53,306 | INFO     | cat /etc/os-release:
[2025-10-25 01:44:55] NAME="CentOS Linux"
[2025-10-25 01:44:55] VERSION="7 (Core)"
[2025-10-25 01:44:55] ID="centos"
[2025-10-25 01:44:55] ID_LIKE="rhel fedora"
[2025-10-25 01:44:55] VERSION_ID="7"
[2025-10-25 01:44:55] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-25 01:44:55] ANSI_COLOR="0;31"
[2025-10-25 01:44:55] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-25 01:44:55] HOME_URL="https://www.centos.org/"
[2025-10-25 01:44:55] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-25 01:44:55] 
[2025-10-25 01:44:55] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-25 01:44:55] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-25 01:44:55] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-25 01:44:55] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-25 01:44:55] 
[2025-10-25 01:44:55] 2025-10-24 23:43:53,307 | INFO     | ***************************************
[2025-10-25 01:44:55] 2025-10-24 23:43:53,810 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-10-25 01:44:55] 2025-10-24 23:43:53,821 | INFO     | sufficient remaining disk space (234679697408 B)
[2025-10-25 01:44:55] 2025-10-24 23:43:53,822 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-25 01:44:55] 2025-10-24 23:43:53,822 | INFO     | current server update state: UPDATING_FINAL
[2025-10-25 01:44:55] 2025-10-24 23:43:53,822 | INFO     | update_server=False
[2025-10-25 01:44:55] 2025-10-24 23:43:53,822 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-25 01:44:55] 2025-10-24 23:43:53,822 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-25 01:44:55] 2025-10-24 23:43:53,986 | INFO     | all payload control threads have been joined
[2025-10-25 01:44:55] 2025-10-24 23:43:54,149 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-25 01:44:55] 2025-10-24 23:43:54,149 | INFO     | aborting loop
[2025-10-25 01:44:55] 2025-10-24 23:43:54,288 | INFO     | all data control threads have been joined
[2025-10-25 01:44:55] 2025-10-24 23:43:54,827 | INFO     | [job] retrieve thread has finished
[2025-10-25 01:44:55] 2025-10-24 23:43:54,992 | INFO     | [payload] control thread has finished
[2025-10-25 01:44:55] 2025-10-24 23:43:55,032 | INFO     | [payload] execute_payloads thread has finished
[2025-10-25 01:44:55] 2025-10-24 23:43:55,105 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-25 01:44:55] 2025-10-24 23:43:55,155 | INFO     | [job] job monitor thread has finished
[2025-10-25 01:44:55] 2025-10-24 23:43:55,190 | INFO     | all job control threads have been joined
[2025-10-25 01:44:55] 2025-10-24 23:43:55,293 | INFO     | [data] control thread has finished
[2025-10-25 01:44:55] 2025-10-24 23:43:55,299 | INFO     | [payload] failed_post thread has finished
[2025-10-25 01:44:55] 2025-10-24 23:43:55,652 | INFO     | [data] copytool_in thread has finished
[2025-10-25 01:44:55] 2025-10-24 23:43:55,811 | INFO     | [payload] validate_post thread has finished
[2025-10-25 01:44:55] 2025-10-24 23:43:56,196 | INFO     | [job] control thread has finished
[2025-10-25 01:44:55] 2025-10-24 23:43:56,228 | INFO     | [job] validate thread has finished
[2025-10-25 01:44:55] 2025-10-24 23:43:56,292 | INFO     | [job] create_data_payload thread has finished
[2025-10-25 01:44:55] 2025-10-24 23:43:56,322 | INFO     | [payload] validate_pre thread has finished
[2025-10-25 01:44:55] 2025-10-24 23:43:56,785 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-25 01:44:55] 2025-10-24 23:43:57,111 | INFO     | [data] copytool_out thread has finished
[2025-10-25 01:44:55] 2025-10-24 23:43:57,790 | INFO     | [job] queue monitor thread has finished
[2025-10-25 01:44:55] 2025-10-24 23:43:57,829 | INFO     | [data] queue_monitor thread has finished
[2025-10-25 01:44:55] 2025-10-24 23:44:04,469 | INFO     | job.realtimelogging is not enabled
[2025-10-25 01:44:55] 2025-10-24 23:44:05,475 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-25 01:44:55] 2025-10-24 23:44:23,740 | INFO     | PID=3219406 has CPU usage=0.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-25 01:44:55] 2025-10-24 23:44:23,740 | INFO     | found 0 job(s) in 20 queues
[2025-10-25 01:44:55] 2025-10-24 23:44:23,740 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-25 01:44:55] 2025-10-24 23:44:23,740 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-25 01:44:55] 2025-10-24 23:44:50,094 | INFO     | [monitor] cgroup control has ended
[2025-10-25 01:44:55] 2025-10-24 23:44:50,476 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140319265515328)>', '<ExcThread(monitor, started 140318762579712)>']
[2025-10-25 01:44:55] 2025-10-24 23:44:50,879 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-25 01:44:55] 2025-10-24 23:44:50,879 | INFO     | [monitor] control thread has ended
[2025-10-25 01:44:55] 2025-10-24 23:44:55,490 | INFO     | all workflow threads have been joined
[2025-10-25 01:44:55] 2025-10-24 23:44:55,490 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-25 01:44:55] 2025-10-24 23:44:55,490 | INFO     | traces error code: 0
[2025-10-25 01:44:55] 2025-10-24 23:44:55,490 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-25 01:44:55] 2025-10-24 23:44:55,541 [wrapper] ==== pilot stdout END ====
[2025-10-25 01:44:55] 2025-10-24 23:44:55,543 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-25 01:44:55] 2025-10-24 23:44:55,546 [wrapper] pilotpid: 3219406
[2025-10-25 01:44:55] 2025-10-24 23:44:55,548 [wrapper] Pilot exit status: 0
[2025-10-25 01:44:55] 2025-10-24 23:44:55,554 [wrapper] pandaids: 6857388952
[2025-10-25 01:44:55] 2025-10-24 23:44:55,570 [wrapper] cleanup supervisor_pilot 3238426 3219407
[2025-10-25 01:44:55] 2025-10-24 23:44:55,572 [wrapper] Test setup, not cleaning
[2025-10-25 01:44:55] 2025-10-24 23:44:55,574 [wrapper] apfmon messages muted
[2025-10-25 01:44:55] 2025-10-24 23:44:55,577 [wrapper] ==== wrapper stdout END ====
[2025-10-25 01:44:55] 2025-10-24 23:44:55,579 [wrapper] ==== wrapper stderr END ====
[2025-10-25 01:44:55]  *** Error codes and diagnostics ***
[2025-10-25 01:44:55]     "exeErrorCode": 0,
[2025-10-25 01:44:55]     "exeErrorDiag": "",
[2025-10-25 01:44:55]     "pilotErrorCode": 0,
[2025-10-25 01:44:55]     "pilotErrorDiag": "",
[2025-10-25 01:44:55]  *** Listing of results directory ***
[2025-10-25 01:44:55] total 402688
[2025-10-25 01:44:55] -rw-r--r-- 1 boinc boinc    557409 Oct 24 05:30 pilot3.tar.gz
[2025-10-25 01:44:55] -rw-r--r-- 1 boinc boinc      5112 Oct 24 05:45 queuedata.json
[2025-10-25 01:44:55] -rwx------ 1 boinc boinc     36292 Oct 24 05:47 runpilot2-wrapper.sh
[2025-10-25 01:44:55] -rw-r--r-- 1 boinc boinc       100 Oct 25 00:11 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-25 01:44:55] -rwxr-xr-x 1 boinc boinc      7986 Oct 25 00:11 run_atlas
[2025-10-25 01:44:55] -rw-r--r-- 1 boinc boinc       105 Oct 25 00:11 job.xml
[2025-10-25 01:44:55] -rw-r--r-- 2 boinc boinc 234738688 Oct 25 00:11 EVNT.46964904._000011.pool.root.1
[2025-10-25 01:44:55] -rw-r--r-- 1 boinc boinc      6919 Oct 25 00:11 init_data.xml
[2025-10-25 01:44:55] drwxrwx--x 2 boinc boinc      4096 Oct 25 00:11 shared
[2025-10-25 01:44:55] -rw-r--r-- 2 boinc boinc    569670 Oct 25 00:11 input.tar.gz
[2025-10-25 01:44:55] -rw-r--r-- 2 boinc boinc     15120 Oct 25 00:11 start_atlas.sh
[2025-10-25 01:44:55] -rw-r--r-- 1 boinc boinc         0 Oct 25 00:11 boinc_lockfile
[2025-10-25 01:44:55] -rw-r--r-- 1 boinc boinc      2557 Oct 25 00:11 pandaJob.out
[2025-10-25 01:44:55] -rw------- 1 boinc boinc    978597 Oct 25 00:11 agis_schedconf.cvmfs.json
[2025-10-25 01:44:55] -rw------- 1 boinc boinc   1560772 Oct 25 00:11 agis_ddmendpoints.agis.ALL.json
[2025-10-25 01:44:55] drwx------ 5 boinc boinc      4096 Oct 25 00:11 pilot3
[2025-10-25 01:44:55] -rw------- 1 boinc boinc 171570407 Oct 25 01:43 HITS.46964913._000265.pool.root.1
[2025-10-25 01:44:55] -rw-r--r-- 1 boinc boinc       529 Oct 25 01:43 boinc_task_state.xml
[2025-10-25 01:44:55] -rw------- 1 boinc boinc      1021 Oct 25 01:43 memory_monitor_summary.json
[2025-10-25 01:44:55] -rw------- 1 boinc boinc    263128 Oct 25 01:43 log.46964913._000265.job.log.tgz.1
[2025-10-25 01:44:55] -rw------- 1 boinc boinc      7758 Oct 25 01:43 heartbeat.json
[2025-10-25 01:44:55] -rw------- 1 boinc boinc        95 Oct 25 01:44 pilot_heartbeat.json
[2025-10-25 01:44:55] -rw-r--r-- 1 boinc boinc        27 Oct 25 01:44 wrapper_checkpoint.txt
[2025-10-25 01:44:55] -rw------- 1 boinc boinc      4824 Oct 25 01:44 pilotlog.txt
[2025-10-25 01:44:55] -rw-r--r-- 1 boinc boinc      8192 Oct 25 01:44 boinc_mmap_file
[2025-10-25 01:44:55] -rw------- 1 boinc boinc    807787 Oct 25 01:44 log.46964913._000265.job.log.1
[2025-10-25 01:44:55] -rw------- 1 boinc boinc       357 Oct 25 01:44 output.list
[2025-10-25 01:44:55] -rw-r--r-- 1 boinc boinc       620 Oct 25 01:44 runtime_log
[2025-10-25 01:44:55] -rw------- 1 boinc boinc   1085440 Oct 25 01:44 result.tar.gz
[2025-10-25 01:44:55] -rw-r--r-- 1 boinc boinc      8782 Oct 25 01:44 runtime_log.err
[2025-10-25 01:44:55] -rw------- 1 boinc boinc       660 Oct 25 01:44 NW2KDmHxNW8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDm7hAODmOlZpqn.diag
[2025-10-25 01:44:55] -rw-r--r-- 1 boinc boinc     22016 Oct 25 01:44 stderr.txt
[2025-10-25 01:44:55] HITS file was successfully produced:
[2025-10-25 01:44:55] -rw------- 1 boinc boinc 171570407 Oct 25 01:43 shared/HITS.pool.root.1
[2025-10-25 01:44:55]  *** Contents of shared directory: ***
[2025-10-25 01:44:55] total 398432
[2025-10-25 01:44:55] -rw-r--r-- 2 boinc boinc 234738688 Oct 25 00:11 ATLAS.root_0
[2025-10-25 01:44:55] -rw-r--r-- 2 boinc boinc    569670 Oct 25 00:11 input.tar.gz
[2025-10-25 01:44:55] -rw-r--r-- 2 boinc boinc     15120 Oct 25 00:11 start_atlas.sh
[2025-10-25 01:44:55] -rw------- 1 boinc boinc 171570407 Oct 25 01:43 HITS.pool.root.1
[2025-10-25 01:44:55] -rw------- 1 boinc boinc   1085440 Oct 25 01:44 result.tar.gz
01:44:56 (3215685): run_atlas exited; CPU time 15898.221254
01:44:56 (3215685): called boinc_finish(0)

</stderr_txt>
]]>

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