Stderr output

<core_client_version>8.2.5</core_client_version>
<![CDATA[
<stderr_txt>
07:52:31 (939325): wrapper (7.7.26015): starting
07:52:31 (939325): wrapper: running run_atlas (--nthreads 12)
[2025-10-24 07:52:31] Arguments: --nthreads 12
[2025-10-24 07:52:31] Threads: 12
[2025-10-24 07:52:31] Checking for CVMFS
[2025-10-24 07:52:31] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-24 07:52:31] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-24 07:52:31] Running cvmfs_config stat atlas.cern.ch
[2025-10-24 07:52:31] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-24 07:52:31] 2.13.2.0 2884831 5220 62212 152079 0 188 5531255 6144001 2742 130560 0 27276402 99.998 197909 328 http://s1fnal-cvmfs.openhtc.io:8080/cvmfs/atlas.cern.ch DIRECT 1
[2025-10-24 07:52:31] CVMFS is ok
[2025-10-24 07:52:31] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-24 07:52:31] Small home clusters do not require a local http proxy but it is suggested if
[2025-10-24 07:52:31] more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
[2025-10-24 07:52:31] Further information can be found at the LHC@home message board.
[2025-10-24 07:52:31] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-24 07:52:31] Checking for apptainer binary...
[2025-10-24 07:52:31] apptainer is not installed, using version from CVMFS
[2025-10-24 07:52:31] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-24 07:52:32] XeonFire
[2025-10-24 07:52:32] apptainer works
[2025-10-24 07:52:32] Set ATHENA_PROC_NUMBER=12
[2025-10-24 07:52:32] Set ATHENA_CORE_NUMBER=12
[2025-10-24 07:52:32] Starting ATLAS job with PandaID=6855074877
[2025-10-24 07:52:32] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/var/lib/boinc-client/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-24 08:45:57]  *** The last 200 lines of the pilot log: ***
[2025-10-24 08:45:57]  storage_token=
[2025-10-24 08:45:57]  surl=/var/lib/boinc-client/slots/1/PanDA_Pilot-6855074877/log.46771637._111974.job.log.tgz.1
[2025-10-24 08:45:57]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/bc/08/log.46771637._111974.job.log.tgz.1
[2025-10-24 08:45:57]  workdir=None
[2025-10-24 08:45:57] ]
[2025-10-24 08:45:57] 2025-10-24 13:44:51,669 | INFO     | transferring file log.46771637._111974.job.log.tgz.1 from /var/lib/boinc-client/slots/1/PanDA_Pilot-6855074877/log.46771637._111974.job.log.tgz.1 to /var/lib/boinc
[2025-10-24 08:45:57] 2025-10-24 13:44:51,669 | INFO     | executing command: /usr/bin/env mv /var/lib/boinc-client/slots/1/PanDA_Pilot-6855074877/log.46771637._111974.job.log.tgz.1 /var/lib/boinc-client/slots/1/log.467716
[2025-10-24 08:45:57] 2025-10-24 13:44:51,689 | INFO     | adding to output.list: log.46771637._111974.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/bc/08/log.46771637._111974.job.log.tg
[2025-10-24 08:45:57] 2025-10-24 13:44:51,689 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-10-24 08:45:57] 2025-10-24 13:44:51,689 | INFO     | summary of transferred files:
[2025-10-24 08:45:57] 2025-10-24 13:44:51,690 | INFO     |  -- lfn=log.46771637._111974.job.log.tgz.1, status_code=0, status=transferred
[2025-10-24 08:45:57] 2025-10-24 13:44:51,690 | INFO     | stage-out finished correctly
[2025-10-24 08:45:57] 2025-10-24 13:44:52,760 | INFO     | time since job start (3126s) is within the limit (172800.0s)
[2025-10-24 08:45:57] 2025-10-24 13:44:53,261 | INFO     | monitor loop #232: job 0:6855074877 is in state 'finished'
[2025-10-24 08:45:57] 2025-10-24 13:44:53,262 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-24 08:45:57] 2025-10-24 13:44:53,870 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-10-24 08:45:57] 2025-10-24 13:44:53,971 | INFO     | job 6855074877 has state=finished
[2025-10-24 08:45:57] 2025-10-24 13:44:53,971 | INFO     | preparing for final server update for job 6855074877 in state='finished'
[2025-10-24 08:45:57] 2025-10-24 13:44:53,972 | INFO     | this job has now completed (state=finished)
[2025-10-24 08:45:57] 2025-10-24 13:44:53,972 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-10-24 08:45:57] 2025-10-24 13:44:53,972 | INFO     | log transfer has been attempted: DONE
[2025-10-24 08:45:57] 2025-10-24 13:44:53,972 | INFO     | job 6855074877 has finished - writing final server update
[2025-10-24 08:45:57] 2025-10-24 13:44:53,973 | INFO     | total number of processed events: 400 (read)
[2025-10-24 08:45:57] 2025-10-24 13:44:53,974 | INFO     | executing command: lscpu
[2025-10-24 08:45:57] 2025-10-24 13:44:54,027 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-10-24 08:45:57] 2025-10-24 13:44:54,766 | INFO     | time since job start (3128s) is within the limit (172800.0s)
[2025-10-24 08:45:57] 2025-10-24 13:44:55,765 | INFO     | monitor loop #233: job 0:6855074877 is in state 'finished'
[2025-10-24 08:45:57] 2025-10-24 13:44:55,765 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-24 08:45:57] 2025-10-24 13:44:56,772 | INFO     | time since job start (3130s) is within the limit (172800.0s)
[2025-10-24 08:45:57] 2025-10-24 13:44:58,162 | INFO     | PID=943820 has CPU usage=12.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-24 08:45:57] 2025-10-24 13:44:58,163 | INFO     | .. there are 4 such processes running
[2025-10-24 08:45:57] 2025-10-24 13:44:58,268 | INFO     | monitor loop #234: job 0:6855074877 is in state 'finished'
[2025-10-24 08:45:57] 2025-10-24 13:44:58,268 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-24 08:45:57] 2025-10-24 13:44:58,420 | INFO     | CPU arch script returned: x86-64-v3
[2025-10-24 08:45:57] 2025-10-24 13:44:58,437 | INFO     | found 44 cores (22 cores per socket, 2 sockets) HT, CPU MHz: 1783.3238977272727
[2025-10-24 08:45:57] 2025-10-24 13:44:58,456 | INFO     | using path: /var/lib/boinc-client/slots/1/PanDA_Pilot-6855074877/memory_monitor_summary.json (trf name=prmon)
[2025-10-24 08:45:57] 2025-10-24 13:44:58,457 | INFO     | extracted standard info from prmon json
[2025-10-24 08:45:57] 2025-10-24 13:44:58,457 | INFO     | extracted standard memory fields from prmon json
[2025-10-24 08:45:57] 2025-10-24 13:44:58,457 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-24 08:45:57] 2025-10-24 13:44:58,458 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-24 08:45:57] 2025-10-24 13:44:58,458 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-24 08:45:57] 2025-10-24 13:44:58,460 | INFO     | fitting pss+swap vs Time
[2025-10-24 08:45:57] 2025-10-24 13:44:58,460 | INFO     | sum of square deviations: 26400495.0
[2025-10-24 08:45:57] 2025-10-24 13:44:58,461 | INFO     | sum of deviations: -671410469.0000001
[2025-10-24 08:45:57] 2025-10-24 13:44:58,461 | INFO     | mean x: 1761312010.5
[2025-10-24 08:45:57] 2025-10-24 13:44:58,461 | INFO     | mean y: 2697188.9545454546
[2025-10-24 08:45:57] 2025-10-24 13:44:58,461 | INFO     | -- intersect: 44795922582.08214
[2025-10-24 08:45:57] 2025-10-24 13:44:58,461 | INFO     | intersect: 44795922582.08214
[2025-10-24 08:45:57] 2025-10-24 13:44:58,461 | INFO     | chi2: 0.004971229974956682
[2025-10-24 08:45:57] 2025-10-24 13:44:58,461 | INFO     | -- intersect: 44795922582.08214
[2025-10-24 08:45:57] 2025-10-24 13:44:58,462 | INFO     | current memory leak: -25.43 B/s (using 44 data points, chi2=0.00)
[2025-10-24 08:45:57] 2025-10-24 13:44:58,462 | INFO     | could have reported an average CPU frequency of 1838 MHz (5 samples)
[2025-10-24 08:45:57] 2025-10-24 13:44:58,462 | INFO     | ..............................
[2025-10-24 08:45:57] 2025-10-24 13:44:58,462 | INFO     | . Timing measurements:
[2025-10-24 08:45:57] 2025-10-24 13:44:58,462 | INFO     | . get job = 0 s
[2025-10-24 08:45:57] 2025-10-24 13:44:58,463 | INFO     | . initial setup = 3 s
[2025-10-24 08:45:57] 2025-10-24 13:44:58,463 | INFO     | . payload setup = 6 s
[2025-10-24 08:45:57] 2025-10-24 13:44:58,463 | INFO     | . stage-in = 0 s
[2025-10-24 08:45:57] 2025-10-24 13:44:58,463 | INFO     | . payload execution = 3097 s
[2025-10-24 08:45:57] 2025-10-24 13:44:58,463 | INFO     | . stage-out = 0 s
[2025-10-24 08:45:57] 2025-10-24 13:44:58,463 | INFO     | . log creation = 0 s
[2025-10-24 08:45:57] 2025-10-24 13:44:58,463 | INFO     | ..............................
[2025-10-24 08:45:57] 2025-10-24 13:44:58,541 | INFO     | 
[2025-10-24 08:45:57] 2025-10-24 13:44:58,541 | INFO     | job summary report
[2025-10-24 08:45:57] 2025-10-24 13:44:58,541 | INFO     | --------------------------------------------------
[2025-10-24 08:45:57] 2025-10-24 13:44:58,541 | INFO     | PanDA job id: 6855074877
[2025-10-24 08:45:57] 2025-10-24 13:44:58,541 | INFO     | task id: 46771637
[2025-10-24 08:45:57] 2025-10-24 13:44:58,541 | INFO     | errors: (none)
[2025-10-24 08:45:57] 2025-10-24 13:44:58,541 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-24 08:45:57] 2025-10-24 13:44:58,542 | INFO     | pilot state: finished 
[2025-10-24 08:45:57] 2025-10-24 13:44:58,542 | INFO     | transexitcode: 0
[2025-10-24 08:45:57] 2025-10-24 13:44:58,542 | INFO     | exeerrorcode: 0
[2025-10-24 08:45:57] 2025-10-24 13:44:58,542 | INFO     | exeerrordiag: 
[2025-10-24 08:45:57] 2025-10-24 13:44:58,542 | INFO     | exitcode: 0
[2025-10-24 08:45:57] 2025-10-24 13:44:58,542 | INFO     | exitmsg: OK
[2025-10-24 08:45:57] 2025-10-24 13:44:58,542 | INFO     | cpuconsumptiontime: 32379 s
[2025-10-24 08:45:57] 2025-10-24 13:44:58,542 | INFO     | nevents: 400
[2025-10-24 08:45:57] 2025-10-24 13:44:58,542 | INFO     | neventsw: 0
[2025-10-24 08:45:57] 2025-10-24 13:44:58,543 | INFO     | pid: 950832
[2025-10-24 08:45:57] 2025-10-24 13:44:58,543 | INFO     | pgrp: 950832
[2025-10-24 08:45:57] 2025-10-24 13:44:58,543 | INFO     | corecount: 12
[2025-10-24 08:45:57] 2025-10-24 13:44:58,543 | INFO     | event service: False
[2025-10-24 08:45:57] 2025-10-24 13:44:58,543 | INFO     | sizes: {0: 2348771, 1: 2348970, 5: 2349232, 11: 2349288, 3107: 2374573, 3109: 2383585, 3111: 2383769, 3116: 2383995}
[2025-10-24 08:45:57] 2025-10-24 13:44:58,543 | INFO     | --------------------------------------------------
[2025-10-24 08:45:57] 2025-10-24 13:44:58,543 | INFO     | 
[2025-10-24 08:45:57] 2025-10-24 13:44:58,543 | INFO     | executing command: ls -lF /var/lib/boinc-client/slots/1
[2025-10-24 08:45:57] 2025-10-24 13:44:58,570 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-24 08:45:57] 2025-10-24 13:44:58,570 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-24 08:45:57] 2025-10-24 13:44:58,571 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-24 08:45:57] 2025-10-24 13:44:58,571 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-24 08:45:57] 2025-10-24 13:44:58,571 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-24 08:45:57] 2025-10-24 13:44:58,571 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-24 08:45:57] 2025-10-24 13:44:58,571 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-24 08:45:57] 2025-10-24 13:44:58,571 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-24 08:45:57] 2025-10-24 13:44:58,571 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-24 08:45:57] 2025-10-24 13:44:58,571 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-24 08:45:57] 2025-10-24 13:44:58,572 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-24 08:45:57] 2025-10-24 13:44:58,572 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-24 08:45:57] 2025-10-24 13:44:58,572 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-24 08:45:57] 2025-10-24 13:44:58,572 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-24 08:45:57] 2025-10-24 13:44:58,572 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-24 08:45:57] 2025-10-24 13:44:58,572 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-24 08:45:57] 2025-10-24 13:44:58,572 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-24 08:45:57] 2025-10-24 13:44:58,572 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-24 08:45:57] 2025-10-24 13:44:58,573 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-24 08:45:57] 2025-10-24 13:44:58,573 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-24 08:45:57] 2025-10-24 13:44:58,573 | INFO     | job 6855074877 has completed (purged errors)
[2025-10-24 08:45:57] 2025-10-24 13:44:58,573 | INFO     | overall cleanup function is called
[2025-10-24 08:45:57] 2025-10-24 13:44:59,582 | INFO     | --- collectZombieJob: --- 10, [950832]
[2025-10-24 08:45:57] 2025-10-24 13:44:59,583 | INFO     | zombie collector waiting for pid 950832
[2025-10-24 08:45:57] 2025-10-24 13:44:59,583 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-24 08:45:57] 2025-10-24 13:44:59,583 | INFO     | collected zombie processes
[2025-10-24 08:45:57] 2025-10-24 13:44:59,583 | INFO     | will attempt to kill all subprocesses of pid=950832
[2025-10-24 08:45:57] 2025-10-24 13:44:59,890 | INFO     | process IDs to be killed: [950832] (in reverse order)
[2025-10-24 08:45:57] 2025-10-24 13:45:00,005 | WARNING  | found no corresponding commands to process id(s)
[2025-10-24 08:45:57] 2025-10-24 13:45:00,005 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-24 08:45:57] 2025-10-24 13:45:00,017 | INFO     | did not find any defunct processes belonging to 950832
[2025-10-24 08:45:57] 2025-10-24 13:45:00,027 | INFO     | did not find any defunct processes belonging to 950832
[2025-10-24 08:45:57] 2025-10-24 13:45:00,028 | INFO     | ready for new job
[2025-10-24 08:45:57] 2025-10-24 13:45:00,028 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-24 08:45:57] 2025-10-24 13:45:00,030 | INFO     | ***************************************
[2025-10-24 08:45:57] 2025-10-24 13:45:00,030 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-24 08:45:57] 2025-10-24 13:45:00,030 | INFO     | ***************************************
[2025-10-24 08:45:57] 2025-10-24 13:45:00,030 | INFO     | 
[2025-10-24 08:45:57] 2025-10-24 13:45:00,036 | INFO     | architecture information:
[2025-10-24 08:45:57] 2025-10-24 13:45:00,037 | INFO     | executing command: cat /etc/os-release
[2025-10-24 08:45:57] 2025-10-24 13:45:00,055 | INFO     | cat /etc/os-release:
[2025-10-24 08:45:57] NAME="CentOS Linux"
[2025-10-24 08:45:57] VERSION="7 (Core)"
[2025-10-24 08:45:57] ID="centos"
[2025-10-24 08:45:57] ID_LIKE="rhel fedora"
[2025-10-24 08:45:57] VERSION_ID="7"
[2025-10-24 08:45:57] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-24 08:45:57] ANSI_COLOR="0;31"
[2025-10-24 08:45:57] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-24 08:45:57] HOME_URL="https://www.centos.org/"
[2025-10-24 08:45:57] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-24 08:45:57] 
[2025-10-24 08:45:57] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-24 08:45:57] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-24 08:45:57] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-24 08:45:57] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-24 08:45:57] 
[2025-10-24 08:45:57] 2025-10-24 13:45:00,056 | INFO     | ***************************************
[2025-10-24 08:45:57] 2025-10-24 13:45:00,558 | INFO     | executing command: df -mP /var/lib/boinc-client/slots/1
[2025-10-24 08:45:57] 2025-10-24 13:45:00,577 | INFO     | sufficient remaining disk space (1807680012288 B)
[2025-10-24 08:45:57] 2025-10-24 13:45:00,578 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-24 08:45:57] 2025-10-24 13:45:00,578 | INFO     | current server update state: UPDATING_FINAL
[2025-10-24 08:45:57] 2025-10-24 13:45:00,578 | INFO     | update_server=False
[2025-10-24 08:45:57] 2025-10-24 13:45:00,578 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-24 08:45:57] 2025-10-24 13:45:00,578 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-24 08:45:57] 2025-10-24 13:45:00,579 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-24 08:45:57] 2025-10-24 13:45:00,771 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-10-24 08:45:57] 2025-10-24 13:45:00,772 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-10-24 08:45:57] 2025-10-24 13:45:00,772 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-24 08:45:57] 2025-10-24 13:45:00,772 | INFO     | will abort loop
[2025-10-24 08:45:57] 2025-10-24 13:45:01,471 | INFO     | all payload control threads have been joined
[2025-10-24 08:45:57] 2025-10-24 13:45:01,584 | INFO     | [job] retrieve thread has finished
[2025-10-24 08:45:57] 2025-10-24 13:45:01,598 | INFO     | [data] copytool_in thread has finished
[2025-10-24 08:45:57] 2025-10-24 13:45:01,663 | INFO     | all data control threads have been joined
[2025-10-24 08:45:57] 2025-10-24 13:45:01,778 | INFO     | [job] job monitor thread has finished
[2025-10-24 08:45:57] 2025-10-24 13:45:01,871 | INFO     | all job control threads have been joined
[2025-10-24 08:45:57] 2025-10-24 13:45:01,937 | INFO     | [payload] execute_payloads thread has finished
[2025-10-24 08:45:57] 2025-10-24 13:45:02,245 | INFO     | [job] validate thread has finished
[2025-10-24 08:45:57] 2025-10-24 13:45:02,474 | INFO     | [payload] control thread has finished
[2025-10-24 08:45:57] 2025-10-24 13:45:02,584 | INFO     | [data] copytool_out thread has finished
[2025-10-24 08:45:57] 2025-10-24 13:45:02,598 | INFO     | [job] create_data_payload thread has finished
[2025-10-24 08:45:57] 2025-10-24 13:45:02,668 | INFO     | [data] control thread has finished
[2025-10-24 08:45:57] 2025-10-24 13:45:02,741 | INFO     | [payload] validate_post thread has finished
[2025-10-24 08:45:57] 2025-10-24 13:45:02,829 | INFO     | [payload] validate_pre thread has finished
[2025-10-24 08:45:57] 2025-10-24 13:45:02,868 | INFO     | [payload] failed_post thread has finished
[2025-10-24 08:45:57] 2025-10-24 13:45:02,877 | INFO     | [job] control thread has finished
[2025-10-24 08:45:57] 2025-10-24 13:45:03,551 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-24 08:45:57] 2025-10-24 13:45:04,556 | INFO     | [job] queue monitor thread has finished
[2025-10-24 08:45:57] 2025-10-24 13:45:04,584 | INFO     | [data] queue_monitor thread has finished
[2025-10-24 08:45:57] 2025-10-24 13:45:11,280 | INFO     | job.realtimelogging is not enabled
[2025-10-24 08:45:57] 2025-10-24 13:45:12,285 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-24 08:45:57] 2025-10-24 13:45:30,610 | INFO     | PID=943820 has CPU usage=2.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-10-24 08:45:57] 2025-10-24 13:45:30,611 | INFO     | .. there are 4 such processes running
[2025-10-24 08:45:57] 2025-10-24 13:45:30,611 | INFO     | found 0 job(s) in 20 queues
[2025-10-24 08:45:57] 2025-10-24 13:45:30,611 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-24 08:45:57] 2025-10-24 13:45:30,611 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-24 08:45:57] 2025-10-24 13:45:50,832 | INFO     | [monitor] cgroup control has ended
[2025-10-24 08:45:57] 2025-10-24 13:45:51,812 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 136719920789312)>', '<ExcThread(monitor, started 136718875358976)>']
[2025-10-24 08:45:57] 2025-10-24 13:45:52,703 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-24 08:45:57] 2025-10-24 13:45:52,703 | INFO     | [monitor] control thread has ended
[2025-10-24 08:45:57] 2025-10-24 13:45:56,837 | INFO     | all workflow threads have been joined
[2025-10-24 08:45:57] 2025-10-24 13:45:56,837 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-24 08:45:57] 2025-10-24 13:45:56,838 | INFO     | traces error code: 0
[2025-10-24 08:45:57] 2025-10-24 13:45:56,838 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-24 08:45:57] 2025-10-24 13:45:56,945 [wrapper] ==== pilot stdout END ====
[2025-10-24 08:45:57] 2025-10-24 13:45:56,948 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-24 08:45:57] 2025-10-24 13:45:56,952 [wrapper] pilotpid: 943820
[2025-10-24 08:45:57] 2025-10-24 13:45:56,955 [wrapper] Pilot exit status: 0
[2025-10-24 08:45:57] 2025-10-24 13:45:56,969 [wrapper] pandaids: 6855074877
[2025-10-24 08:45:57] 2025-10-24 13:45:57,029 [wrapper] cleanup supervisor_pilot 1018234 943821
[2025-10-24 08:45:57] 2025-10-24 13:45:57,032 [wrapper] Test setup, not cleaning
[2025-10-24 08:45:57] 2025-10-24 13:45:57,035 [wrapper] apfmon messages muted
[2025-10-24 08:45:57] 2025-10-24 13:45:57,039 [wrapper] ==== wrapper stdout END ====
[2025-10-24 08:45:57] 2025-10-24 13:45:57,043 [wrapper] ==== wrapper stderr END ====
[2025-10-24 08:45:57]  *** Error codes and diagnostics ***
[2025-10-24 08:45:57]     "exeErrorCode": 0,
[2025-10-24 08:45:57]     "exeErrorDiag": "",
[2025-10-24 08:45:57]     "pilotErrorCode": 0,
[2025-10-24 08:45:57]     "pilotErrorDiag": "",
[2025-10-24 08:45:57]  *** Listing of results directory ***
[2025-10-24 08:45:57] total 431016
[2025-10-24 08:45:57] -rw-r--r-- 1 mark mark    557409 Oct 23 15:24 pilot3.tar.gz
[2025-10-24 08:45:57] -rw-r--r-- 1 mark mark      5112 Oct 23 16:06 queuedata.json
[2025-10-24 08:45:57] -rwx------ 1 mark mark     36292 Oct 23 16:13 runpilot2-wrapper.sh
[2025-10-24 08:45:57] -rw-rw-r-- 1 mark mark       100 Oct 24 07:52 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-24 08:45:57] -rwxr-xr-x 1 mark mark      7986 Oct 24 07:52 run_atlas
[2025-10-24 08:45:57] -rw-rw-r-- 1 mark mark       105 Oct 24 07:52 job.xml
[2025-10-24 08:45:57] -rw-r--r-- 2 mark mark 228828267 Oct 24 07:52 EVNT.46771634._004470.pool.root.1
[2025-10-24 08:45:57] -rw-r--r-- 2 mark mark     15120 Oct 24 07:52 start_atlas.sh
[2025-10-24 08:45:57] drwxrwx--x 2 mark mark      4096 Oct 24 07:52 shared
[2025-10-24 08:45:57] -rw-r--r-- 2 mark mark    569685 Oct 24 07:52 input.tar.gz
[2025-10-24 08:45:57] -rw-rw-r-- 1 mark mark      9229 Oct 24 07:52 init_data.xml
[2025-10-24 08:45:57] -rw-rw-r-- 1 mark mark         0 Oct 24 07:52 boinc_setup_complete
[2025-10-24 08:45:57] -rw-rw-r-- 1 mark mark         0 Oct 24 07:52 boinc_lockfile
[2025-10-24 08:45:57] -rw-rw-r-- 1 mark mark      2562 Oct 24 07:52 pandaJob.out
[2025-10-24 08:45:57] -rw------- 1 mark mark    978588 Oct 24 07:52 agis_schedconf.cvmfs.json
[2025-10-24 08:45:57] -rw------- 1 mark mark   1560772 Oct 24 07:52 agis_ddmendpoints.agis.ALL.json
[2025-10-24 08:45:57] drwx------ 5 mark mark      4096 Oct 24 07:52 pilot3
[2025-10-24 08:45:57] -rw------- 1 mark mark 206941683 Oct 24 08:44 HITS.46771637._111974.pool.root.1
[2025-10-24 08:45:57] -rw-rw-r-- 1 mark mark       529 Oct 24 08:44 boinc_task_state.xml
[2025-10-24 08:45:57] -rw------- 1 mark mark      1034 Oct 24 08:44 memory_monitor_summary.json
[2025-10-24 08:45:57] -rw------- 1 mark mark        95 Oct 24 08:44 pilot_heartbeat.json
[2025-10-24 08:45:57] -rw------- 1 mark mark    363238 Oct 24 08:44 log.46771637._111974.job.log.tgz.1
[2025-10-24 08:45:57] -rw------- 1 mark mark      7790 Oct 24 08:44 heartbeat.json
[2025-10-24 08:45:57] -rw-rw-r-- 1 mark mark      8192 Oct 24 08:45 boinc_mmap_file
[2025-10-24 08:45:57] -rw-rw-r-- 1 mark mark        27 Oct 24 08:45 wrapper_checkpoint.txt
[2025-10-24 08:45:57] -rw------- 1 mark mark      5089 Oct 24 08:45 pilotlog.txt
[2025-10-24 08:45:57] -rw------- 1 mark mark    478280 Oct 24 08:45 log.46771637._111974.job.log.1
[2025-10-24 08:45:57] -rw------- 1 mark mark       357 Oct 24 08:45 output.list
[2025-10-24 08:45:57] -rw-rw-r-- 1 mark mark       620 Oct 24 08:45 runtime_log
[2025-10-24 08:45:57] -rw------- 1 mark mark    860160 Oct 24 08:45 result.tar.gz
[2025-10-24 08:45:57] -rw-rw-r-- 1 mark mark      8759 Oct 24 08:45 runtime_log.err
[2025-10-24 08:45:57] -rw------- 1 mark mark       645 Oct 24 08:45 6TvLDmTnHW8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmWm9NDm81Iwqn.diag
[2025-10-24 08:45:57] -rw-rw-r-- 1 mark mark     22342 Oct 24 08:45 stderr.txt
[2025-10-24 08:45:57] HITS file was successfully produced:
[2025-10-24 08:45:57] -rw------- 1 mark mark 206941683 Oct 24 08:44 shared/HITS.pool.root.1
[2025-10-24 08:45:57]  *** Contents of shared directory: ***
[2025-10-24 08:45:57] total 426984
[2025-10-24 08:45:57] -rw-r--r-- 2 mark mark 228828267 Oct 24 07:52 ATLAS.root_0
[2025-10-24 08:45:57] -rw-r--r-- 2 mark mark     15120 Oct 24 07:52 start_atlas.sh
[2025-10-24 08:45:57] -rw-r--r-- 2 mark mark    569685 Oct 24 07:52 input.tar.gz
[2025-10-24 08:45:57] -rw------- 1 mark mark 206941683 Oct 24 08:44 HITS.pool.root.1
[2025-10-24 08:45:57] -rw------- 1 mark mark    860160 Oct 24 08:45 result.tar.gz
08:45:58 (939325): run_atlas exited; CPU time 32481.625731
08:45:58 (939325): called boinc_finish(0)

</stderr_txt>
]]>

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