Stderr output

<core_client_version>8.0.4</core_client_version>
<![CDATA[
<stderr_txt>
19:32:10 (3136071): wrapper (7.7.26015): starting
19:32:10 (3136071): wrapper: running run_atlas (--nthreads 3)
[2025-10-24 19:32:10] Arguments: --nthreads 3
[2025-10-24 19:32:10] Threads: 3
[2025-10-24 19:32:10] Checking for CVMFS
[2025-10-24 19:32:10] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-24 19:32:10] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-24 19:32:10] Running cvmfs_config stat atlas.cern.ch
[2025-10-24 19:32:10] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-24 19:32:10] 2.9.2.0 1615638 5232 85016 152090 2 57 24536913 36864000 0 130560 0 3988140 99.989 203208 915 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-10-24 19:32:10] CVMFS is ok
[2025-10-24 19:32:10] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-24 19:32:10] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-24 19:32:10] Further information can be found at the LHC@home message board.
[2025-10-24 19:32:10] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-24 19:32:10] Checking for apptainer binary...
[2025-10-24 19:32:10] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-24 19:32:10] Running /usr/bin/apptainer --version
[2025-10-24 19:32:10] apptainer version 1.3.6-4.2
[2025-10-24 19:32:10] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-24 19:32:10] thA325b
[2025-10-24 19:32:10] apptainer works
[2025-10-24 19:32:10] Set ATHENA_PROC_NUMBER=3
[2025-10-24 19:32:10] Set ATHENA_CORE_NUMBER=3
[2025-10-24 19:32:10] Starting ATLAS job with PandaID=6855282624
[2025-10-24 19:32:10] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-24 21:01:29]  *** The last 200 lines of the pilot log: ***
[2025-10-24 21:01:29]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-10-24 21:01:29]  replicas=None
[2025-10-24 21:01:29]  scope=mc23_13p6TeV
[2025-10-24 21:01:29]  status=None
[2025-10-24 21:01:29]  status_code=0
[2025-10-24 21:01:29]  storage_token=
[2025-10-24 21:01:29]  surl=/local/data/boinc/slots/0/PanDA_Pilot-6855282624/log.46771637._114052.job.log.tgz.1
[2025-10-24 21:01:29]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/6b/e9/log.46771637._114052.job.log.tgz.1
[2025-10-24 21:01:29]  workdir=None
[2025-10-24 21:01:29] ]
[2025-10-24 21:01:29] 2025-10-24 19:00:50,543 | INFO     | transferring file log.46771637._114052.job.log.tgz.1 from /local/data/boinc/slots/0/PanDA_Pilot-6855282624/log.46771637._114052.job.log.tgz.1 to /local/data/boinc/
[2025-10-24 21:01:29] 2025-10-24 19:00:50,543 | INFO     | executing command: /usr/bin/env mv /local/data/boinc/slots/0/PanDA_Pilot-6855282624/log.46771637._114052.job.log.tgz.1 /local/data/boinc/slots/0/log.46771637._1140
[2025-10-24 21:01:29] 2025-10-24 19:00:50,555 | INFO     | adding to output.list: log.46771637._114052.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/6b/e9/log.46771637._114052.job.log.tg
[2025-10-24 21:01:29] 2025-10-24 19:00:50,556 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-10-24 21:01:29] 2025-10-24 19:00:50,556 | INFO     | summary of transferred files:
[2025-10-24 21:01:29] 2025-10-24 19:00:50,556 | INFO     |  -- lfn=log.46771637._114052.job.log.tgz.1, status_code=0, status=transferred
[2025-10-24 21:01:29] 2025-10-24 19:00:50,556 | INFO     | stage-out finished correctly
[2025-10-24 21:01:29] 2025-10-24 19:00:51,416 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-10-24 21:01:29] 2025-10-24 19:00:52,032 | INFO     | monitor loop #409: job 0:6855282624 is in state 'finished'
[2025-10-24 21:01:29] 2025-10-24 19:00:52,032 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-24 21:01:29] 2025-10-24 19:00:52,141 | INFO     | time since job start (5316s) is within the limit (172800.0s)
[2025-10-24 21:01:29] 2025-10-24 19:00:53,047 | INFO     | job 6855282624 has state=finished
[2025-10-24 21:01:29] 2025-10-24 19:00:53,047 | INFO     | preparing for final server update for job 6855282624 in state='finished'
[2025-10-24 21:01:29] 2025-10-24 19:00:53,047 | INFO     | this job has now completed (state=finished)
[2025-10-24 21:01:29] 2025-10-24 19:00:53,047 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-10-24 21:01:29] 2025-10-24 19:00:53,047 | INFO     | log transfer has been attempted: DONE
[2025-10-24 21:01:29] 2025-10-24 19:00:53,047 | INFO     | job 6855282624 has finished - writing final server update
[2025-10-24 21:01:29] 2025-10-24 19:00:53,048 | INFO     | total number of processed events: 400 (read)
[2025-10-24 21:01:29] 2025-10-24 19:00:53,048 | INFO     | executing command: lscpu
[2025-10-24 21:01:29] 2025-10-24 19:00:53,062 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-10-24 21:01:29] 2025-10-24 19:00:54,146 | INFO     | time since job start (5318s) is within the limit (172800.0s)
[2025-10-24 21:01:29] 2025-10-24 19:00:54,535 | INFO     | monitor loop #410: job 0:6855282624 is in state 'finished'
[2025-10-24 21:01:29] 2025-10-24 19:00:54,535 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-24 21:01:29] 2025-10-24 19:00:56,151 | INFO     | time since job start (5320s) is within the limit (172800.0s)
[2025-10-24 21:01:29] 2025-10-24 19:00:57,038 | INFO     | monitor loop #411: job 0:6855282624 is in state 'finished'
[2025-10-24 21:01:29] 2025-10-24 19:00:57,038 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-24 21:01:29] 2025-10-24 19:00:57,091 | INFO     | CPU arch script returned: x86-64-v3
[2025-10-24 21:01:29] 2025-10-24 19:00:57,092 | INFO     | found 6 cores (6 cores per socket, 1 socket) HT, CPU MHz: 3790.1882500000006
[2025-10-24 21:01:29] 2025-10-24 19:00:57,093 | INFO     | using path: /local/data/boinc/slots/0/PanDA_Pilot-6855282624/memory_monitor_summary.json (trf name=prmon)
[2025-10-24 21:01:29] 2025-10-24 19:00:57,093 | INFO     | extracted standard info from prmon json
[2025-10-24 21:01:29] 2025-10-24 19:00:57,093 | INFO     | extracted standard memory fields from prmon json
[2025-10-24 21:01:29] 2025-10-24 19:00:57,093 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-24 21:01:29] 2025-10-24 19:00:57,093 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-24 21:01:29] 2025-10-24 19:00:57,093 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-24 21:01:29] 2025-10-24 19:00:57,094 | INFO     | fitting pss+swap vs Time
[2025-10-24 21:01:29] 2025-10-24 19:00:57,094 | INFO     | sum of square deviations: 158737860.0
[2025-10-24 21:01:29] 2025-10-24 19:00:57,094 | INFO     | sum of deviations: -13112810405.000004
[2025-10-24 21:01:29] 2025-10-24 19:00:57,094 | INFO     | mean x: 1761329869.5
[2025-10-24 21:01:29] 2025-10-24 19:00:57,094 | INFO     | mean y: 2470846.775
[2025-10-24 21:01:29] 2025-10-24 19:00:57,094 | INFO     | -- intersect: 145500114820.41116
[2025-10-24 21:01:29] 2025-10-24 19:00:57,094 | INFO     | intersect: 145500114820.41116
[2025-10-24 21:01:29] 2025-10-24 19:00:57,094 | INFO     | chi2: 0.08045096906047057
[2025-10-24 21:01:29] 2025-10-24 19:00:57,094 | INFO     | -- intersect: 145500114820.41116
[2025-10-24 21:01:29] 2025-10-24 19:00:57,095 | INFO     | current memory leak: -82.61 B/s (using 80 data points, chi2=0.08)
[2025-10-24 21:01:29] 2025-10-24 19:00:57,095 | INFO     | could have reported an average CPU frequency of 3858 MHz (6 samples)
[2025-10-24 21:01:29] 2025-10-24 19:00:57,095 | INFO     | ..............................
[2025-10-24 21:01:29] 2025-10-24 19:00:57,095 | INFO     | . Timing measurements:
[2025-10-24 21:01:29] 2025-10-24 19:00:57,095 | INFO     | . get job = 0 s
[2025-10-24 21:01:29] 2025-10-24 19:00:57,095 | INFO     | . initial setup = 1 s
[2025-10-24 21:01:29] 2025-10-24 19:00:57,095 | INFO     | . payload setup = 2 s
[2025-10-24 21:01:29] 2025-10-24 19:00:57,095 | INFO     | . stage-in = 0 s
[2025-10-24 21:01:29] 2025-10-24 19:00:57,095 | INFO     | . payload execution = 5294 s
[2025-10-24 21:01:29] 2025-10-24 19:00:57,095 | INFO     | . stage-out = 0 s
[2025-10-24 21:01:29] 2025-10-24 19:00:57,095 | INFO     | . log creation = 0 s
[2025-10-24 21:01:29] 2025-10-24 19:00:57,095 | INFO     | ..............................
[2025-10-24 21:01:29] 2025-10-24 19:00:57,125 | INFO     | 
[2025-10-24 21:01:29] 2025-10-24 19:00:57,125 | INFO     | job summary report
[2025-10-24 21:01:29] 2025-10-24 19:00:57,125 | INFO     | --------------------------------------------------
[2025-10-24 21:01:29] 2025-10-24 19:00:57,125 | INFO     | PanDA job id: 6855282624
[2025-10-24 21:01:29] 2025-10-24 19:00:57,125 | INFO     | task id: 46771637
[2025-10-24 21:01:29] 2025-10-24 19:00:57,125 | INFO     | errors: (none)
[2025-10-24 21:01:29] 2025-10-24 19:00:57,125 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-24 21:01:29] 2025-10-24 19:00:57,125 | INFO     | pilot state: finished 
[2025-10-24 21:01:29] 2025-10-24 19:00:57,125 | INFO     | transexitcode: 0
[2025-10-24 21:01:29] 2025-10-24 19:00:57,125 | INFO     | exeerrorcode: 0
[2025-10-24 21:01:29] 2025-10-24 19:00:57,125 | INFO     | exeerrordiag: 
[2025-10-24 21:01:29] 2025-10-24 19:00:57,125 | INFO     | exitcode: 0
[2025-10-24 21:01:29] 2025-10-24 19:00:57,125 | INFO     | exitmsg: OK
[2025-10-24 21:01:29] 2025-10-24 19:00:57,125 | INFO     | cpuconsumptiontime: 15280 s
[2025-10-24 21:01:29] 2025-10-24 19:00:57,125 | INFO     | nevents: 400
[2025-10-24 21:01:29] 2025-10-24 19:00:57,125 | INFO     | neventsw: 0
[2025-10-24 21:01:29] 2025-10-24 19:00:57,125 | INFO     | pid: 3146232
[2025-10-24 21:01:29] 2025-10-24 19:00:57,125 | INFO     | pgrp: 3146232
[2025-10-24 21:01:29] 2025-10-24 19:00:57,125 | INFO     | corecount: 3
[2025-10-24 21:01:29] 2025-10-24 19:00:57,126 | INFO     | event service: False
[2025-10-24 21:01:29] 2025-10-24 19:00:57,126 | INFO     | sizes: {0: 2348938, 3: 2349200, 11: 2349228, 5301: 2375908, 5302: 2384967, 5303: 2384967, 5308: 2385289}
[2025-10-24 21:01:29] 2025-10-24 19:00:57,126 | INFO     | --------------------------------------------------
[2025-10-24 21:01:29] 2025-10-24 19:00:57,126 | INFO     | 
[2025-10-24 21:01:29] 2025-10-24 19:00:57,126 | INFO     | executing command: ls -lF /local/data/boinc/slots/0
[2025-10-24 21:01:29] 2025-10-24 19:00:57,138 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-24 21:01:29] 2025-10-24 19:00:57,138 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-24 21:01:29] 2025-10-24 19:00:57,138 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-24 21:01:29] 2025-10-24 19:00:57,138 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-24 21:01:29] 2025-10-24 19:00:57,138 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-24 21:01:29] 2025-10-24 19:00:57,138 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-24 21:01:29] 2025-10-24 19:00:57,138 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-24 21:01:29] 2025-10-24 19:00:57,138 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-24 21:01:29] 2025-10-24 19:00:57,138 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-24 21:01:29] 2025-10-24 19:00:57,138 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-24 21:01:29] 2025-10-24 19:00:57,138 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-24 21:01:29] 2025-10-24 19:00:57,138 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-24 21:01:29] 2025-10-24 19:00:57,138 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-24 21:01:29] 2025-10-24 19:00:57,138 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-24 21:01:29] 2025-10-24 19:00:57,138 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-24 21:01:29] 2025-10-24 19:00:57,138 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-24 21:01:29] 2025-10-24 19:00:57,138 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-24 21:01:29] 2025-10-24 19:00:57,138 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-24 21:01:29] 2025-10-24 19:00:57,138 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-24 21:01:29] 2025-10-24 19:00:57,138 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-24 21:01:29] 2025-10-24 19:00:57,139 | INFO     | job 6855282624 has completed (purged errors)
[2025-10-24 21:01:29] 2025-10-24 19:00:57,139 | INFO     | overall cleanup function is called
[2025-10-24 21:01:29] 2025-10-24 19:00:58,145 | INFO     | --- collectZombieJob: --- 10, [3146232]
[2025-10-24 21:01:29] 2025-10-24 19:00:58,145 | INFO     | zombie collector waiting for pid 3146232
[2025-10-24 21:01:29] 2025-10-24 19:00:58,145 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-24 21:01:29] 2025-10-24 19:00:58,145 | INFO     | collected zombie processes
[2025-10-24 21:01:29] 2025-10-24 19:00:58,145 | INFO     | will attempt to kill all subprocesses of pid=3146232
[2025-10-24 21:01:29] 2025-10-24 19:00:58,184 | INFO     | process IDs to be killed: [3146232] (in reverse order)
[2025-10-24 21:01:29] 2025-10-24 19:00:58,208 | WARNING  | found no corresponding commands to process id(s)
[2025-10-24 21:01:29] 2025-10-24 19:00:58,208 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-24 21:01:29] 2025-10-24 19:00:58,209 | INFO     | did not find any defunct processes belonging to 3146232
[2025-10-24 21:01:29] 2025-10-24 19:00:58,210 | INFO     | did not find any defunct processes belonging to 3146232
[2025-10-24 21:01:29] 2025-10-24 19:00:58,210 | INFO     | ready for new job
[2025-10-24 21:01:29] 2025-10-24 19:00:58,210 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-24 21:01:29] 2025-10-24 19:00:58,211 | INFO     | ***************************************
[2025-10-24 21:01:29] 2025-10-24 19:00:58,211 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-24 21:01:29] 2025-10-24 19:00:58,211 | INFO     | ***************************************
[2025-10-24 21:01:29] 2025-10-24 19:00:58,211 | INFO     | 
[2025-10-24 21:01:29] 2025-10-24 19:00:58,211 | INFO     | architecture information:
[2025-10-24 21:01:29] 2025-10-24 19:00:58,212 | INFO     | executing command: cat /etc/os-release
[2025-10-24 21:01:29] 2025-10-24 19:00:58,220 | INFO     | cat /etc/os-release:
[2025-10-24 21:01:29] NAME="CentOS Linux"
[2025-10-24 21:01:29] VERSION="7 (Core)"
[2025-10-24 21:01:29] ID="centos"
[2025-10-24 21:01:29] ID_LIKE="rhel fedora"
[2025-10-24 21:01:29] VERSION_ID="7"
[2025-10-24 21:01:29] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-24 21:01:29] ANSI_COLOR="0;31"
[2025-10-24 21:01:29] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-24 21:01:29] HOME_URL="https://www.centos.org/"
[2025-10-24 21:01:29] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-24 21:01:29] 
[2025-10-24 21:01:29] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-24 21:01:29] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-24 21:01:29] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-24 21:01:29] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-24 21:01:29] 
[2025-10-24 21:01:29] 2025-10-24 19:00:58,220 | INFO     | ***************************************
[2025-10-24 21:01:29] 2025-10-24 19:00:58,724 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-10-24 21:01:29] 2025-10-24 19:00:58,735 | INFO     | sufficient remaining disk space (234743660544 B)
[2025-10-24 21:01:29] 2025-10-24 19:00:58,735 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-24 21:01:29] 2025-10-24 19:00:58,735 | INFO     | current server update state: UPDATING_FINAL
[2025-10-24 21:01:29] 2025-10-24 19:00:58,735 | INFO     | update_server=False
[2025-10-24 21:01:29] 2025-10-24 19:00:58,735 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-24 21:01:29] 2025-10-24 19:00:58,735 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-24 21:01:29] 2025-10-24 19:00:58,736 | INFO     | aborting loop
[2025-10-24 21:01:29] 2025-10-24 19:00:58,736 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-24 21:01:29] 2025-10-24 19:00:58,736 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-24 21:01:29] 2025-10-24 19:00:58,790 | INFO     | all job control threads have been joined
[2025-10-24 21:01:29] 2025-10-24 19:00:59,424 | INFO     | all payload control threads have been joined
[2025-10-24 21:01:29] 2025-10-24 19:00:59,611 | INFO     | all data control threads have been joined
[2025-10-24 21:01:29] 2025-10-24 19:00:59,736 | INFO     | [job] retrieve thread has finished
[2025-10-24 21:01:29] 2025-10-24 19:00:59,741 | INFO     | [job] queue monitor thread has finished
[2025-10-24 21:01:29] 2025-10-24 19:00:59,741 | INFO     | [job] job monitor thread has finished
[2025-10-24 21:01:29] 2025-10-24 19:00:59,785 | INFO     | [payload] execute_payloads thread has finished
[2025-10-24 21:01:29] 2025-10-24 19:00:59,796 | INFO     | [job] control thread has finished
[2025-10-24 21:01:29] 2025-10-24 19:01:00,103 | INFO     | [data] copytool_in thread has finished
[2025-10-24 21:01:29] 2025-10-24 19:01:00,386 | INFO     | [payload] failed_post thread has finished
[2025-10-24 21:01:29] 2025-10-24 19:01:00,430 | INFO     | [payload] control thread has finished
[2025-10-24 21:01:29] 2025-10-24 19:01:00,616 | INFO     | [data] control thread has finished
[2025-10-24 21:01:29] 2025-10-24 19:01:00,704 | INFO     | [job] validate thread has finished
[2025-10-24 21:01:29] 2025-10-24 19:01:00,742 | INFO     | [data] copytool_out thread has finished
[2025-10-24 21:01:29] 2025-10-24 19:01:00,778 | INFO     | [job] create_data_payload thread has finished
[2025-10-24 21:01:29] 2025-10-24 19:01:00,817 | INFO     | [payload] validate_pre thread has finished
[2025-10-24 21:01:29] 2025-10-24 19:01:00,897 | INFO     | [payload] validate_post thread has finished
[2025-10-24 21:01:29] 2025-10-24 19:01:01,958 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-24 21:01:29] 2025-10-24 19:01:05,965 | INFO     | [data] queue_monitor thread has finished
[2025-10-24 21:01:29] 2025-10-24 19:01:09,392 | INFO     | job.realtimelogging is not enabled
[2025-10-24 21:01:29] 2025-10-24 19:01:10,398 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-24 21:01:29] 2025-10-24 19:01:21,582 | INFO     | [monitor] cgroup control has ended
[2025-10-24 21:01:29] 2025-10-24 19:01:23,057 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140109216503616)>', '<ExcThread(monitor, started 140108569224960)>']
[2025-10-24 21:01:29] 2025-10-24 19:01:28,083 | INFO     | all workflow threads have been joined
[2025-10-24 21:01:29] 2025-10-24 19:01:28,083 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-24 21:01:29] 2025-10-24 19:01:28,083 | INFO     | traces error code: 0
[2025-10-24 21:01:29] 2025-10-24 19:01:28,083 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-24 21:01:29] 2025-10-24 19:01:29,263 | INFO     | PID=3139794 has CPU usage=1.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-24 21:01:29] 2025-10-24 19:01:29,263 | INFO     | found 0 job(s) in 20 queues
[2025-10-24 21:01:29] 2025-10-24 19:01:29,263 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-24 21:01:29] 2025-10-24 19:01:29,263 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-24 21:01:29] 2025-10-24 19:01:29,263 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-24 21:01:29] 2025-10-24 19:01:29,263 | INFO     | [monitor] control thread has ended
[2025-10-24 21:01:29] 2025-10-24 19:01:29,312 [wrapper] ==== pilot stdout END ====
[2025-10-24 21:01:29] 2025-10-24 19:01:29,315 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-24 21:01:29] 2025-10-24 19:01:29,317 [wrapper] pilotpid: 3139794
[2025-10-24 21:01:29] 2025-10-24 19:01:29,319 [wrapper] Pilot exit status: 0
[2025-10-24 21:01:29] 2025-10-24 19:01:29,326 [wrapper] pandaids: 6855282624
[2025-10-24 21:01:29] 2025-10-24 19:01:29,342 [wrapper] cleanup supervisor_pilot 3158420 3139795
[2025-10-24 21:01:29] 2025-10-24 19:01:29,344 [wrapper] Test setup, not cleaning
[2025-10-24 21:01:29] 2025-10-24 19:01:29,346 [wrapper] apfmon messages muted
[2025-10-24 21:01:29] 2025-10-24 19:01:29,348 [wrapper] ==== wrapper stdout END ====
[2025-10-24 21:01:29] 2025-10-24 19:01:29,351 [wrapper] ==== wrapper stderr END ====
[2025-10-24 21:01:29]  *** Error codes and diagnostics ***
[2025-10-24 21:01:29]     "exeErrorCode": 0,
[2025-10-24 21:01:29]     "exeErrorDiag": "",
[2025-10-24 21:01:29]     "pilotErrorCode": 0,
[2025-10-24 21:01:29]     "pilotErrorDiag": "",
[2025-10-24 21:01:29]  *** Listing of results directory ***
[2025-10-24 21:01:29] total 428676
[2025-10-24 21:01:29] -rw-r--r-- 1 boinc boinc    557409 Oct 24 01:28 pilot3.tar.gz
[2025-10-24 21:01:29] -rw-r--r-- 1 boinc boinc      5112 Oct 24 01:51 queuedata.json
[2025-10-24 21:01:29] -rwx------ 1 boinc boinc     36292 Oct 24 01:53 runpilot2-wrapper.sh
[2025-10-24 21:01:29] -rw-r--r-- 1 boinc boinc       100 Oct 24 19:32 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-24 21:01:29] -rwxr-xr-x 1 boinc boinc      7986 Oct 24 19:32 run_atlas
[2025-10-24 21:01:29] -rw-r--r-- 1 boinc boinc       105 Oct 24 19:32 job.xml
[2025-10-24 21:01:29] -rw-r--r-- 2 boinc boinc 230973218 Oct 24 19:32 EVNT.46771634._004552.pool.root.1
[2025-10-24 21:01:29] -rw-r--r-- 1 boinc boinc      6919 Oct 24 19:32 init_data.xml
[2025-10-24 21:01:29] drwxrwx--x 2 boinc boinc      4096 Oct 24 19:32 shared
[2025-10-24 21:01:29] -rw-r--r-- 2 boinc boinc    569690 Oct 24 19:32 input.tar.gz
[2025-10-24 21:01:29] -rw-r--r-- 2 boinc boinc     15120 Oct 24 19:32 start_atlas.sh
[2025-10-24 21:01:29] -rw-r--r-- 1 boinc boinc         0 Oct 24 19:32 boinc_lockfile
[2025-10-24 21:01:29] -rw-r--r-- 1 boinc boinc      2562 Oct 24 19:32 pandaJob.out
[2025-10-24 21:01:29] -rw------- 1 boinc boinc    978605 Oct 24 19:32 agis_schedconf.cvmfs.json
[2025-10-24 21:01:29] -rw------- 1 boinc boinc   1560772 Oct 24 19:32 agis_ddmendpoints.agis.ALL.json
[2025-10-24 21:01:29] drwx------ 5 boinc boinc      4096 Oct 24 19:32 pilot3
[2025-10-24 21:01:29] -rw------- 1 boinc boinc 202043193 Oct 24 21:00 HITS.46771637._114052.pool.root.1
[2025-10-24 21:01:29] -rw-r--r-- 1 boinc boinc       529 Oct 24 21:00 boinc_task_state.xml
[2025-10-24 21:01:29] -rw------- 1 boinc boinc        95 Oct 24 21:00 pilot_heartbeat.json
[2025-10-24 21:01:29] -rw------- 1 boinc boinc      1021 Oct 24 21:00 memory_monitor_summary.json
[2025-10-24 21:01:29] -rw------- 1 boinc boinc    248712 Oct 24 21:00 log.46771637._114052.job.log.tgz.1
[2025-10-24 21:01:29] -rw------- 1 boinc boinc      7765 Oct 24 21:00 heartbeat.json
[2025-10-24 21:01:29] -rw-r--r-- 1 boinc boinc      8192 Oct 24 21:01 boinc_mmap_file
[2025-10-24 21:01:29] -rw-r--r-- 1 boinc boinc        27 Oct 24 21:01 wrapper_checkpoint.txt
[2025-10-24 21:01:29] -rw------- 1 boinc boinc       747 Oct 24 21:01 pilotlog.txt
[2025-10-24 21:01:29] -rw------- 1 boinc boinc    777348 Oct 24 21:01 log.46771637._114052.job.log.1
[2025-10-24 21:01:29] -rw------- 1 boinc boinc       357 Oct 24 21:01 output.list
[2025-10-24 21:01:29] -rw-r--r-- 1 boinc boinc       620 Oct 24 21:01 runtime_log
[2025-10-24 21:01:29] -rw------- 1 boinc boinc   1044480 Oct 24 21:01 result.tar.gz
[2025-10-24 21:01:29] -rw-r--r-- 1 boinc boinc      8782 Oct 24 21:01 runtime_log.err
[2025-10-24 21:01:29] -rw------- 1 boinc boinc       659 Oct 24 21:01 kLQKDmhIKW8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmWDAODmmpXWYn.diag
[2025-10-24 21:01:29] -rw-r--r-- 1 boinc boinc     21857 Oct 24 21:01 stderr.txt
[2025-10-24 21:01:29] HITS file was successfully produced:
[2025-10-24 21:01:29] -rw------- 1 boinc boinc 202043193 Oct 24 21:00 shared/HITS.pool.root.1
[2025-10-24 21:01:29]  *** Contents of shared directory: ***
[2025-10-24 21:01:29] total 424472
[2025-10-24 21:01:29] -rw-r--r-- 2 boinc boinc 230973218 Oct 24 19:32 ATLAS.root_0
[2025-10-24 21:01:29] -rw-r--r-- 2 boinc boinc    569690 Oct 24 19:32 input.tar.gz
[2025-10-24 21:01:29] -rw-r--r-- 2 boinc boinc     15120 Oct 24 19:32 start_atlas.sh
[2025-10-24 21:01:29] -rw------- 1 boinc boinc 202043193 Oct 24 21:00 HITS.pool.root.1
[2025-10-24 21:01:29] -rw------- 1 boinc boinc   1044480 Oct 24 21:01 result.tar.gz
21:01:30 (3136071): run_atlas exited; CPU time 15298.215059
21:01:30 (3136071): called boinc_finish(0)

</stderr_txt>
]]>

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