Stderr output

<core_client_version>7.24.1</core_client_version>
<![CDATA[
<stderr_txt>
09:53:49 (2230744): wrapper (7.7.26015): starting
09:53:49 (2230744): wrapper: running run_atlas (--nthreads 4)
[2025-10-24 09:53:49] Arguments: --nthreads 4
[2025-10-24 09:53:49] Threads: 4
[2025-10-24 09:53:49] Checking for CVMFS
[2025-10-24 09:53:49] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-24 09:53:49] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-24 09:53:49] Running cvmfs_config stat atlas.cern.ch
[2025-10-24 09:53:49] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-24 09:53:49] 2.13.2.0 48316 4170 52844 152066 1 188 3979021 4096001 2766 130560 0 17371882 99.998 152327 1512 http://s1ral-cvmfs.openhtc.io/cvmfs/atlas.cern.ch DIRECT 1
[2025-10-24 09:53:49] CVMFS is ok
[2025-10-24 09:53:49] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-24 09:53:49] Small home clusters do not require a local http proxy but it is suggested if
[2025-10-24 09:53:49] more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
[2025-10-24 09:53:49] Further information can be found at the LHC@home message board.
[2025-10-24 09:53:49] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-24 09:53:49] Checking for apptainer binary...
[2025-10-24 09:53:49] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-24 09:53:49] Running /usr/bin/apptainer --version
[2025-10-24 09:53:49] apptainer version 1.4.2
[2025-10-24 09:53:49] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-24 09:53:50] Ryzen-9-7950X3D-Zen4-Ubu24
[2025-10-24 09:53:50] apptainer works
[2025-10-24 09:53:50] Set ATHENA_PROC_NUMBER=4
[2025-10-24 09:53:50] Set ATHENA_CORE_NUMBER=4
[2025-10-24 09:53:50] Starting ATLAS job with PandaID=6853991604
[2025-10-24 09:53:50] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc-client/slots/5 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-24 11:32:13]  *** The last 200 lines of the pilot log: ***
[2025-10-24 11:32:13]  status=None
[2025-10-24 11:32:13]  status_code=0
[2025-10-24 11:32:13]  storage_token=
[2025-10-24 11:32:13]  surl=/var/lib/boinc-client/slots/5/PanDA_Pilot-6853991604/log.46771637._096520.job.log.tgz.1
[2025-10-24 11:32:13]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/22/f8/log.46771637._096520.job.log.tgz.1
[2025-10-24 11:32:13]  workdir=None
[2025-10-24 11:32:13] ]
[2025-10-24 11:32:13] 2025-10-24 09:31:27,405 | INFO     | transferring file log.46771637._096520.job.log.tgz.1 from /var/lib/boinc-client/slots/5/PanDA_Pilot-6853991604/log.46771637._096520.job.log.tgz.1 to /var/lib/boinc
[2025-10-24 11:32:13] 2025-10-24 09:31:27,405 | INFO     | executing command: /usr/bin/env mv /var/lib/boinc-client/slots/5/PanDA_Pilot-6853991604/log.46771637._096520.job.log.tgz.1 /var/lib/boinc-client/slots/5/log.467716
[2025-10-24 11:32:13] 2025-10-24 09:31:27,429 | INFO     | adding to output.list: log.46771637._096520.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/22/f8/log.46771637._096520.job.log.tg
[2025-10-24 11:32:13] 2025-10-24 09:31:27,429 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-10-24 11:32:13] 2025-10-24 09:31:27,429 | INFO     | summary of transferred files:
[2025-10-24 11:32:13] 2025-10-24 09:31:27,429 | INFO     |  -- lfn=log.46771637._096520.job.log.tgz.1, status_code=0, status=transferred
[2025-10-24 11:32:13] 2025-10-24 09:31:27,430 | INFO     | stage-out finished correctly
[2025-10-24 11:32:13] 2025-10-24 09:31:28,062 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-10-24 11:32:13] 2025-10-24 09:31:28,111 | INFO     | job 6853991604 has state=finished
[2025-10-24 11:32:13] 2025-10-24 09:31:28,112 | INFO     | preparing for final server update for job 6853991604 in state='finished'
[2025-10-24 11:32:13] 2025-10-24 09:31:28,112 | INFO     | this job has now completed (state=finished)
[2025-10-24 11:32:13] 2025-10-24 09:31:28,112 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-10-24 11:32:13] 2025-10-24 09:31:28,112 | INFO     | log transfer has been attempted: DONE
[2025-10-24 11:32:13] 2025-10-24 09:31:28,112 | INFO     | job 6853991604 has finished - writing final server update
[2025-10-24 11:32:13] 2025-10-24 09:31:28,112 | INFO     | total number of processed events: 400 (read)
[2025-10-24 11:32:13] 2025-10-24 09:31:28,116 | INFO     | executing command: lscpu
[2025-10-24 11:32:13] 2025-10-24 09:31:28,151 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-10-24 11:32:13] 2025-10-24 09:31:28,813 | INFO     | monitor loop #448: job 0:6853991604 is in state 'finished'
[2025-10-24 11:32:13] 2025-10-24 09:31:28,813 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-24 11:32:13] 2025-10-24 09:31:29,162 | INFO     | time since job start (5852s) is within the limit (172800.0s)
[2025-10-24 11:32:13] 2025-10-24 09:31:31,167 | INFO     | time since job start (5854s) is within the limit (172800.0s)
[2025-10-24 11:32:13] 2025-10-24 09:31:31,316 | INFO     | monitor loop #449: job 0:6853991604 is in state 'finished'
[2025-10-24 11:32:13] 2025-10-24 09:31:31,317 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-24 11:32:13] 2025-10-24 09:31:33,172 | INFO     | time since job start (5856s) is within the limit (172800.0s)
[2025-10-24 11:32:13] 2025-10-24 09:31:33,819 | INFO     | monitor loop #450: job 0:6853991604 is in state 'finished'
[2025-10-24 11:32:13] 2025-10-24 09:31:33,820 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-24 11:32:13] 2025-10-24 09:31:33,925 | INFO     | CPU arch script returned: x86-64-v4
[2025-10-24 11:32:13] 2025-10-24 09:31:33,929 | INFO     | found 16 cores (16 cores per socket, 1 socket) HT, CPU MHz: 4063.7820312500007
[2025-10-24 11:32:13] 2025-10-24 09:31:33,932 | INFO     | using path: /var/lib/boinc-client/slots/5/PanDA_Pilot-6853991604/memory_monitor_summary.json (trf name=prmon)
[2025-10-24 11:32:13] 2025-10-24 09:31:33,933 | INFO     | extracted standard info from prmon json
[2025-10-24 11:32:13] 2025-10-24 09:31:33,933 | INFO     | extracted standard memory fields from prmon json
[2025-10-24 11:32:13] 2025-10-24 09:31:33,933 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-24 11:32:13] 2025-10-24 09:31:33,933 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-24 11:32:13] 2025-10-24 09:31:33,933 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-24 11:32:13] 2025-10-24 09:31:33,934 | INFO     | fitting pss+swap vs Time
[2025-10-24 11:32:13] 2025-10-24 09:31:33,935 | INFO     | sum of square deviations: 218571540.0
[2025-10-24 11:32:13] 2025-10-24 09:31:33,935 | INFO     | sum of deviations: -5628270469.000001
[2025-10-24 11:32:13] 2025-10-24 09:31:33,935 | INFO     | mean x: 1761295448.0
[2025-10-24 11:32:13] 2025-10-24 09:31:33,935 | INFO     | mean y: 2352940.2696629213
[2025-10-24 11:32:13] 2025-10-24 09:31:33,935 | INFO     | -- intersect: 45356140341.69679
[2025-10-24 11:32:13] 2025-10-24 09:31:33,935 | INFO     | intersect: 45356140341.69679
[2025-10-24 11:32:13] 2025-10-24 09:31:33,935 | INFO     | chi2: 0.03431693812596145
[2025-10-24 11:32:13] 2025-10-24 09:31:33,935 | INFO     | -- intersect: 45356140341.69679
[2025-10-24 11:32:13] 2025-10-24 09:31:33,935 | INFO     | current memory leak: -25.75 B/s (using 89 data points, chi2=0.03)
[2025-10-24 11:32:13] 2025-10-24 09:31:33,935 | INFO     | could have reported an average CPU frequency of 4291 MHz (7 samples)
[2025-10-24 11:32:13] 2025-10-24 09:31:33,936 | INFO     | ..............................
[2025-10-24 11:32:13] 2025-10-24 09:31:33,936 | INFO     | . Timing measurements:
[2025-10-24 11:32:13] 2025-10-24 09:31:33,936 | INFO     | . get job = 0 s
[2025-10-24 11:32:13] 2025-10-24 09:31:33,936 | INFO     | . initial setup = 1 s
[2025-10-24 11:32:13] 2025-10-24 09:31:33,936 | INFO     | . payload setup = 4 s
[2025-10-24 11:32:13] 2025-10-24 09:31:33,936 | INFO     | . stage-in = 0 s
[2025-10-24 11:32:13] 2025-10-24 09:31:33,936 | INFO     | . payload execution = 5828 s
[2025-10-24 11:32:13] 2025-10-24 09:31:33,936 | INFO     | . stage-out = 0 s
[2025-10-24 11:32:13] 2025-10-24 09:31:33,936 | INFO     | . log creation = 0 s
[2025-10-24 11:32:13] 2025-10-24 09:31:33,936 | INFO     | ..............................
[2025-10-24 11:32:13] 2025-10-24 09:31:34,316 | INFO     | 
[2025-10-24 11:32:13] 2025-10-24 09:31:34,317 | INFO     | job summary report
[2025-10-24 11:32:13] 2025-10-24 09:31:34,317 | INFO     | --------------------------------------------------
[2025-10-24 11:32:13] 2025-10-24 09:31:34,317 | INFO     | PanDA job id: 6853991604
[2025-10-24 11:32:13] 2025-10-24 09:31:34,317 | INFO     | task id: 46771637
[2025-10-24 11:32:13] 2025-10-24 09:31:34,317 | INFO     | errors: (none)
[2025-10-24 11:32:13] 2025-10-24 09:31:34,317 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-24 11:32:13] 2025-10-24 09:31:34,317 | INFO     | pilot state: finished 
[2025-10-24 11:32:13] 2025-10-24 09:31:34,317 | INFO     | transexitcode: 0
[2025-10-24 11:32:13] 2025-10-24 09:31:34,317 | INFO     | exeerrorcode: 0
[2025-10-24 11:32:13] 2025-10-24 09:31:34,317 | INFO     | exeerrordiag: 
[2025-10-24 11:32:13] 2025-10-24 09:31:34,317 | INFO     | exitcode: 0
[2025-10-24 11:32:13] 2025-10-24 09:31:34,317 | INFO     | exitmsg: OK
[2025-10-24 11:32:13] 2025-10-24 09:31:34,317 | INFO     | cpuconsumptiontime: 22601 s
[2025-10-24 11:32:13] 2025-10-24 09:31:34,317 | INFO     | nevents: 400
[2025-10-24 11:32:13] 2025-10-24 09:31:34,317 | INFO     | neventsw: 0
[2025-10-24 11:32:13] 2025-10-24 09:31:34,317 | INFO     | pid: 2241242
[2025-10-24 11:32:13] 2025-10-24 09:31:34,317 | INFO     | pgrp: 2241242
[2025-10-24 11:32:13] 2025-10-24 09:31:34,317 | INFO     | corecount: 4
[2025-10-24 11:32:13] 2025-10-24 09:31:34,317 | INFO     | event service: False
[2025-10-24 11:32:13] 2025-10-24 09:31:34,317 | INFO     | sizes: {0: 2348938, 3: 2349200, 11: 2349228, 5835: 2376091, 5836: 2385158, 5837: 2385158, 5843: 2385480}
[2025-10-24 11:32:13] 2025-10-24 09:31:34,317 | INFO     | --------------------------------------------------
[2025-10-24 11:32:13] 2025-10-24 09:31:34,317 | INFO     | 
[2025-10-24 11:32:13] 2025-10-24 09:31:34,317 | INFO     | executing command: ls -lF /var/lib/boinc-client/slots/5
[2025-10-24 11:32:13] 2025-10-24 09:31:34,335 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-24 11:32:13] 2025-10-24 09:31:34,335 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-24 11:32:13] 2025-10-24 09:31:34,335 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-24 11:32:13] 2025-10-24 09:31:34,335 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-24 11:32:13] 2025-10-24 09:31:34,335 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-24 11:32:13] 2025-10-24 09:31:34,335 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-24 11:32:13] 2025-10-24 09:31:34,335 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-24 11:32:13] 2025-10-24 09:31:34,335 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-24 11:32:13] 2025-10-24 09:31:34,335 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-24 11:32:13] 2025-10-24 09:31:34,335 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-24 11:32:13] 2025-10-24 09:31:34,335 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-24 11:32:13] 2025-10-24 09:31:34,335 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-24 11:32:13] 2025-10-24 09:31:34,335 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-24 11:32:13] 2025-10-24 09:31:34,335 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-24 11:32:13] 2025-10-24 09:31:34,335 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-24 11:32:13] 2025-10-24 09:31:34,336 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-24 11:32:13] 2025-10-24 09:31:34,336 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-24 11:32:13] 2025-10-24 09:31:34,336 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-24 11:32:13] 2025-10-24 09:31:34,336 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-24 11:32:13] 2025-10-24 09:31:34,336 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-24 11:32:13] 2025-10-24 09:31:34,336 | INFO     | job 6853991604 has completed (purged errors)
[2025-10-24 11:32:13] 2025-10-24 09:31:34,336 | INFO     | overall cleanup function is called
[2025-10-24 11:32:13] 2025-10-24 09:31:35,343 | INFO     | --- collectZombieJob: --- 10, [2241242]
[2025-10-24 11:32:13] 2025-10-24 09:31:35,343 | INFO     | zombie collector waiting for pid 2241242
[2025-10-24 11:32:13] 2025-10-24 09:31:35,343 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-24 11:32:13] 2025-10-24 09:31:35,343 | INFO     | collected zombie processes
[2025-10-24 11:32:13] 2025-10-24 09:31:35,343 | INFO     | will attempt to kill all subprocesses of pid=2241242
[2025-10-24 11:32:13] 2025-10-24 09:31:35,416 | INFO     | process IDs to be killed: [2241242] (in reverse order)
[2025-10-24 11:32:13] 2025-10-24 09:31:35,459 | WARNING  | found no corresponding commands to process id(s)
[2025-10-24 11:32:13] 2025-10-24 09:31:35,460 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-24 11:32:13] 2025-10-24 09:31:35,462 | INFO     | did not find any defunct processes belonging to 2241242
[2025-10-24 11:32:13] 2025-10-24 09:31:35,465 | INFO     | did not find any defunct processes belonging to 2241242
[2025-10-24 11:32:13] 2025-10-24 09:31:35,465 | INFO     | ready for new job
[2025-10-24 11:32:13] 2025-10-24 09:31:35,465 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-24 11:32:13] 2025-10-24 09:31:35,466 | INFO     | ***************************************
[2025-10-24 11:32:13] 2025-10-24 09:31:35,466 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-24 11:32:13] 2025-10-24 09:31:35,466 | INFO     | ***************************************
[2025-10-24 11:32:13] 2025-10-24 09:31:35,466 | INFO     | 
[2025-10-24 11:32:13] 2025-10-24 09:31:35,467 | INFO     | architecture information:
[2025-10-24 11:32:13] 2025-10-24 09:31:35,467 | INFO     | executing command: cat /etc/os-release
[2025-10-24 11:32:13] 2025-10-24 09:31:35,482 | INFO     | cat /etc/os-release:
[2025-10-24 11:32:13] NAME="CentOS Linux"
[2025-10-24 11:32:13] VERSION="7 (Core)"
[2025-10-24 11:32:13] ID="centos"
[2025-10-24 11:32:13] ID_LIKE="rhel fedora"
[2025-10-24 11:32:13] VERSION_ID="7"
[2025-10-24 11:32:13] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-24 11:32:13] ANSI_COLOR="0;31"
[2025-10-24 11:32:13] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-24 11:32:13] HOME_URL="https://www.centos.org/"
[2025-10-24 11:32:13] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-24 11:32:13] 
[2025-10-24 11:32:13] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-24 11:32:13] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-24 11:32:13] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-24 11:32:13] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-24 11:32:13] 
[2025-10-24 11:32:13] 2025-10-24 09:31:35,483 | INFO     | ***************************************
[2025-10-24 11:32:13] 2025-10-24 09:31:35,986 | INFO     | executing command: df -mP /var/lib/boinc-client/slots/5
[2025-10-24 11:32:13] 2025-10-24 09:31:36,000 | INFO     | sufficient remaining disk space (1760567492608 B)
[2025-10-24 11:32:13] 2025-10-24 09:31:36,001 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-24 11:32:13] 2025-10-24 09:31:36,001 | INFO     | current server update state: UPDATING_FINAL
[2025-10-24 11:32:13] 2025-10-24 09:31:36,001 | INFO     | update_server=False
[2025-10-24 11:32:13] 2025-10-24 09:31:36,001 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-24 11:32:13] 2025-10-24 09:31:36,001 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-24 11:32:13] 2025-10-24 09:31:36,324 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-10-24 11:32:13] 2025-10-24 09:31:36,325 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-10-24 11:32:13] 2025-10-24 09:31:36,325 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-24 11:32:13] 2025-10-24 09:31:36,325 | INFO     | will abort loop
[2025-10-24 11:32:13] 2025-10-24 09:31:36,364 | INFO     | all job control threads have been joined
[2025-10-24 11:32:13] 2025-10-24 09:31:36,866 | INFO     | all data control threads have been joined
[2025-10-24 11:32:13] 2025-10-24 09:31:37,006 | INFO     | [job] retrieve thread has finished
[2025-10-24 11:32:13] 2025-10-24 09:31:37,017 | INFO     | [payload] failed_post thread has finished
[2025-10-24 11:32:13] 2025-10-24 09:31:37,085 | INFO     | [payload] validate_pre thread has finished
[2025-10-24 11:32:13] 2025-10-24 09:31:37,164 | INFO     | all payload control threads have been joined
[2025-10-24 11:32:13] 2025-10-24 09:31:37,329 | INFO     | [job] job monitor thread has finished
[2025-10-24 11:32:13] 2025-10-24 09:31:37,368 | INFO     | [job] control thread has finished
[2025-10-24 11:32:13] 2025-10-24 09:31:37,603 | INFO     | [payload] validate_post thread has finished
[2025-10-24 11:32:13] 2025-10-24 09:31:37,871 | INFO     | [data] control thread has finished
[2025-10-24 11:32:13] 2025-10-24 09:31:37,972 | INFO     | [payload] execute_payloads thread has finished
[2025-10-24 11:32:13] 2025-10-24 09:31:38,006 | INFO     | [data] copytool_out thread has finished
[2025-10-24 11:32:13] 2025-10-24 09:31:38,169 | INFO     | [payload] control thread has finished
[2025-10-24 11:32:13] 2025-10-24 09:31:38,418 | INFO     | [job] validate thread has finished
[2025-10-24 11:32:13] 2025-10-24 09:31:38,486 | INFO     | [data] copytool_in thread has finished
[2025-10-24 11:32:13] 2025-10-24 09:31:38,506 | INFO     | [job] create_data_payload thread has finished
[2025-10-24 11:32:13] 2025-10-24 09:31:38,623 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-24 11:32:13] 2025-10-24 09:31:39,001 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-24 11:32:13] 2025-10-24 09:31:40,006 | INFO     | [job] queue monitor thread has finished
[2025-10-24 11:32:13] 2025-10-24 09:31:42,629 | INFO     | [data] queue_monitor thread has finished
[2025-10-24 11:32:13] 2025-10-24 09:31:46,571 | INFO     | job.realtimelogging is not enabled
[2025-10-24 11:32:13] 2025-10-24 09:31:47,576 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-24 11:32:13] 2025-10-24 09:32:06,350 | INFO     | PID=2234594 has CPU usage=2.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-24 11:32:13] 2025-10-24 09:32:06,350 | INFO     | .. there are 4 such processes running
[2025-10-24 11:32:13] 2025-10-24 09:32:06,351 | INFO     | found 0 job(s) in 20 queues
[2025-10-24 11:32:13] 2025-10-24 09:32:06,351 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-24 11:32:13] 2025-10-24 09:32:06,351 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-24 11:32:13] 2025-10-24 09:32:06,453 | INFO     | [monitor] cgroup control has ended
[2025-10-24 11:32:13] 2025-10-24 09:32:08,429 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 125756892124992)>', '<ExcThread(monitor, started 125756399134464)>']
[2025-10-24 11:32:13] 2025-10-24 09:32:09,365 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-24 11:32:13] 2025-10-24 09:32:09,365 | INFO     | [monitor] control thread has ended
[2025-10-24 11:32:13] 2025-10-24 09:32:13,454 | INFO     | all workflow threads have been joined
[2025-10-24 11:32:13] 2025-10-24 09:32:13,454 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-24 11:32:13] 2025-10-24 09:32:13,455 | INFO     | traces error code: 0
[2025-10-24 11:32:13] 2025-10-24 09:32:13,455 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-24 11:32:13] 2025-10-24 09:32:13,565 [wrapper] ==== pilot stdout END ====
[2025-10-24 11:32:13] 2025-10-24 09:32:13,582 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-24 11:32:13] 2025-10-24 09:32:13,584 [wrapper] pilotpid: 2234594
[2025-10-24 11:32:13] 2025-10-24 09:32:13,587 [wrapper] Pilot exit status: 0
[2025-10-24 11:32:13] 2025-10-24 09:32:13,596 [wrapper] pandaids: 6853991604
[2025-10-24 11:32:13] 2025-10-24 09:32:13,624 [wrapper] cleanup supervisor_pilot 2315624 2234595
[2025-10-24 11:32:13] 2025-10-24 09:32:13,631 [wrapper] Test setup, not cleaning
[2025-10-24 11:32:13] 2025-10-24 09:32:13,639 [wrapper] apfmon messages muted
[2025-10-24 11:32:13] 2025-10-24 09:32:13,641 [wrapper] ==== wrapper stdout END ====
[2025-10-24 11:32:13] 2025-10-24 09:32:13,643 [wrapper] ==== wrapper stderr END ====
[2025-10-24 11:32:13]  *** Error codes and diagnostics ***
[2025-10-24 11:32:13]     "exeErrorCode": 0,
[2025-10-24 11:32:13]     "exeErrorDiag": "",
[2025-10-24 11:32:13]     "pilotErrorCode": 0,
[2025-10-24 11:32:13]     "pilotErrorDiag": "",
[2025-10-24 11:32:13]  *** Listing of results directory ***
[2025-10-24 11:32:13] total 432596
[2025-10-24 11:32:13] -rw-r--r-- 1 boinc boinc    557409 Oct 23 01:49 pilot3.tar.gz
[2025-10-24 11:32:13] -rw-r--r-- 1 boinc boinc      5112 Oct 23 02:22 queuedata.json
[2025-10-24 11:32:13] -rwx------ 1 boinc boinc     36292 Oct 23 02:23 runpilot2-wrapper.sh
[2025-10-24 11:32:13] -rw-r--r-- 1 boinc boinc       100 Oct 24 09:53 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-24 11:32:13] -rwxr-xr-x 1 boinc boinc      7986 Oct 24 09:53 run_atlas
[2025-10-24 11:32:13] -rw-r--r-- 1 boinc boinc       105 Oct 24 09:53 job.xml
[2025-10-24 11:32:13] -rw-r--r-- 2 boinc boinc 226978293 Oct 24 09:53 EVNT.46771634._003923.pool.root.1
[2025-10-24 11:32:13] -rw-r--r-- 2 boinc boinc     15120 Oct 24 09:53 start_atlas.sh
[2025-10-24 11:32:13] drwxrwx--x 2 boinc boinc      4096 Oct 24 09:53 shared
[2025-10-24 11:32:13] -rw-r--r-- 2 boinc boinc    569676 Oct 24 09:53 input.tar.gz
[2025-10-24 11:32:13] -rw-r--r-- 1 boinc boinc         0 Oct 24 09:53 boinc_lockfile
[2025-10-24 11:32:13] -rw-r--r-- 1 boinc boinc      2560 Oct 24 09:53 pandaJob.out
[2025-10-24 11:32:13] -rw------- 1 boinc boinc    978590 Oct 24 09:53 agis_schedconf.cvmfs.json
[2025-10-24 11:32:13] -rw------- 1 boinc boinc   1560740 Oct 24 09:53 agis_ddmendpoints.agis.ALL.json
[2025-10-24 11:32:13] drwx------ 5 boinc boinc      4096 Oct 24 09:53 pilot3
[2025-10-24 11:32:13] -rw-r--r-- 1 boinc boinc      9521 Oct 24 11:26 init_data.xml
[2025-10-24 11:32:13] -rw------- 1 boinc boinc 209756836 Oct 24 11:31 HITS.46771637._096520.pool.root.1
[2025-10-24 11:32:13] -rw-r--r-- 1 boinc boinc       529 Oct 24 11:31 boinc_task_state.xml
[2025-10-24 11:32:13] -rw------- 1 boinc boinc      1028 Oct 24 11:31 memory_monitor_summary.json
[2025-10-24 11:32:13] -rw------- 1 boinc boinc    291650 Oct 24 11:31 log.46771637._096520.job.log.tgz.1
[2025-10-24 11:32:13] -rw------- 1 boinc boinc      7788 Oct 24 11:31 heartbeat.json
[2025-10-24 11:32:13] -rw-r--r-- 1 boinc boinc      8192 Oct 24 11:32 boinc_mmap_file
[2025-10-24 11:32:13] -rw-r--r-- 1 boinc boinc        27 Oct 24 11:32 wrapper_checkpoint.txt
[2025-10-24 11:32:13] -rw------- 1 boinc boinc        95 Oct 24 11:32 pilot_heartbeat.json
[2025-10-24 11:32:13] -rw------- 1 boinc boinc      5090 Oct 24 11:32 pilotlog.txt
[2025-10-24 11:32:13] -rw------- 1 boinc boinc    875659 Oct 24 11:32 log.46771637._096520.job.log.1
[2025-10-24 11:32:13] -rw------- 1 boinc boinc       357 Oct 24 11:32 output.list
[2025-10-24 11:32:13] -rw-r--r-- 1 boinc boinc       620 Oct 24 11:32 runtime_log
[2025-10-24 11:32:13] -rw------- 1 boinc boinc   1187840 Oct 24 11:32 result.tar.gz
[2025-10-24 11:32:13] -rw------- 1 boinc boinc       658 Oct 24 11:32 RyZLDmJIyV8n9Rq4apOajLDm4fhM0noT9bVof3QYDmKfiMDmvG4Aqn.diag
[2025-10-24 11:32:13] -rw-r--r-- 1 boinc boinc      8841 Oct 24 11:32 runtime_log.err
[2025-10-24 11:32:13] -rw-r--r-- 1 boinc boinc     22074 Oct 24 11:32 stderr.txt
[2025-10-24 11:32:13] HITS file was successfully produced:
[2025-10-24 11:32:13] -rw------- 1 boinc boinc 209756836 Oct 24 11:31 shared/HITS.pool.root.1
[2025-10-24 11:32:13]  *** Contents of shared directory: ***
[2025-10-24 11:32:13] total 428244
[2025-10-24 11:32:13] -rw-r--r-- 2 boinc boinc 226978293 Oct 24 09:53 ATLAS.root_0
[2025-10-24 11:32:13] -rw-r--r-- 2 boinc boinc     15120 Oct 24 09:53 start_atlas.sh
[2025-10-24 11:32:13] -rw-r--r-- 2 boinc boinc    569676 Oct 24 09:53 input.tar.gz
[2025-10-24 11:32:13] -rw------- 1 boinc boinc 209756836 Oct 24 11:31 HITS.pool.root.1
[2025-10-24 11:32:13] -rw------- 1 boinc boinc   1187840 Oct 24 11:32 result.tar.gz
11:32:15 (2230744): run_atlas exited; CPU time 22615.215835
11:32:15 (2230744): called boinc_finish(0)

</stderr_txt>
]]>

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