Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
20:20:55 (3438537): wrapper (7.7.26015): starting
20:20:55 (3438537): wrapper: running run_atlas (--nthreads 3)
[2025-10-24 20:20:55] Arguments: --nthreads 3
[2025-10-24 20:20:55] Threads: 3
[2025-10-24 20:20:55] Checking for CVMFS
[2025-10-24 20:20:55] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-24 20:20:55] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-24 20:20:55] Running cvmfs_config stat atlas.cern.ch
[2025-10-24 20:20:55] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-24 20:20:55] 2.9.2.0 1719162 5521 83256 152092 2 56 5211681 36864001 0 130560 0 4155456 99.989 210743 1057 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-10-24 20:20:55] CVMFS is ok
[2025-10-24 20:20:55] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-24 20:20:55] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-24 20:20:55] Further information can be found at the LHC@home message board.
[2025-10-24 20:20:55] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-24 20:20:55] Checking for apptainer binary...
[2025-10-24 20:20:55] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-24 20:20:55] Running /usr/bin/apptainer --version
[2025-10-24 20:20:55] apptainer version 1.4.1-1.1
[2025-10-24 20:20:55] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-24 20:20:56] cosA127a
[2025-10-24 20:20:56] apptainer works
[2025-10-24 20:20:56] Set ATHENA_PROC_NUMBER=3
[2025-10-24 20:20:56] Set ATHENA_CORE_NUMBER=3
[2025-10-24 20:20:56] Starting ATLAS job with PandaID=6855196640
[2025-10-24 20:20:56] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-24 21:53:15]  *** The last 200 lines of the pilot log: ***
[2025-10-24 21:53:15]  mtime=0
[2025-10-24 21:53:15]  protocol_id=None
[2025-10-24 21:53:15]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-10-24 21:53:15]  replicas=None
[2025-10-24 21:53:15]  scope=mc23_13p6TeV
[2025-10-24 21:53:15]  status=None
[2025-10-24 21:53:15]  status_code=0
[2025-10-24 21:53:15]  storage_token=
[2025-10-24 21:53:15]  surl=/local/data/boinc/slots/0/PanDA_Pilot-6855196640/log.46771637._112572.job.log.tgz.1
[2025-10-24 21:53:15]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/f3/71/log.46771637._112572.job.log.tgz.1
[2025-10-24 21:53:15]  workdir=None
[2025-10-24 21:53:15] ]
[2025-10-24 21:53:15] 2025-10-24 19:52:13,569 | INFO     | transferring file log.46771637._112572.job.log.tgz.1 from /local/data/boinc/slots/0/PanDA_Pilot-6855196640/log.46771637._112572.job.log.tgz.1 to /local/data/boinc/
[2025-10-24 21:53:15] 2025-10-24 19:52:13,569 | INFO     | executing command: /usr/bin/env mv /local/data/boinc/slots/0/PanDA_Pilot-6855196640/log.46771637._112572.job.log.tgz.1 /local/data/boinc/slots/0/log.46771637._1125
[2025-10-24 21:53:15] 2025-10-24 19:52:13,580 | INFO     | adding to output.list: log.46771637._112572.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/f3/71/log.46771637._112572.job.log.tg
[2025-10-24 21:53:15] 2025-10-24 19:52:13,581 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-10-24 21:53:15] 2025-10-24 19:52:13,581 | INFO     | summary of transferred files:
[2025-10-24 21:53:15] 2025-10-24 19:52:13,581 | INFO     |  -- lfn=log.46771637._112572.job.log.tgz.1, status_code=0, status=transferred
[2025-10-24 21:53:15] 2025-10-24 19:52:13,581 | INFO     | stage-out finished correctly
[2025-10-24 21:53:15] 2025-10-24 19:52:14,518 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-10-24 21:53:15] 2025-10-24 19:52:14,547 | INFO     | job 6855196640 has state=finished
[2025-10-24 21:53:15] 2025-10-24 19:52:14,547 | INFO     | preparing for final server update for job 6855196640 in state='finished'
[2025-10-24 21:53:15] 2025-10-24 19:52:14,801 | INFO     | time since job start (5473s) is within the limit (172800.0s)
[2025-10-24 21:53:15] 2025-10-24 19:52:14,911 | WARNING  | process 3448694 can no longer be monitored (due to stat problems) - aborting
[2025-10-24 21:53:15] 2025-10-24 19:52:14,911 | INFO     | using path: /local/data/boinc/slots/0/PanDA_Pilot-6855196640/memory_monitor_summary.json (trf name=prmon)
[2025-10-24 21:53:15] 2025-10-24 19:52:14,961 | INFO     | number of running child processes to parent process 3448694: 1
[2025-10-24 21:53:15] 2025-10-24 19:52:14,961 | INFO     | maximum number of monitored processes: 6
[2025-10-24 21:53:15] 2025-10-24 19:52:15,168 | INFO     | sent prmon JSON dictionary to logstash server (urllib method)
[2025-10-24 21:53:15] 2025-10-24 19:52:15,168 | INFO     | this job has now completed (state=finished)
[2025-10-24 21:53:15] 2025-10-24 19:52:15,168 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-10-24 21:53:15] 2025-10-24 19:52:15,168 | INFO     | log transfer has been attempted: DONE
[2025-10-24 21:53:15] 2025-10-24 19:52:15,168 | INFO     | job 6855196640 has finished - writing final server update
[2025-10-24 21:53:15] 2025-10-24 19:52:15,168 | INFO     | total number of processed events: 400 (read)
[2025-10-24 21:53:15] 2025-10-24 19:52:15,168 | INFO     | executing command: lscpu
[2025-10-24 21:53:15] 2025-10-24 19:52:15,181 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-10-24 21:53:15] 2025-10-24 19:52:16,806 | INFO     | time since job start (5475s) is within the limit (172800.0s)
[2025-10-24 21:53:15] 2025-10-24 19:52:17,415 | INFO     | CPU arch script returned: x86-64-v3
[2025-10-24 21:53:15] 2025-10-24 19:52:17,416 | INFO     | found 6 cores (6 cores per socket, 1 socket) HT, CPU MHz: 3967.8159166666665
[2025-10-24 21:53:15] 2025-10-24 19:52:17,417 | INFO     | using path: /local/data/boinc/slots/0/PanDA_Pilot-6855196640/memory_monitor_summary.json (trf name=prmon)
[2025-10-24 21:53:15] 2025-10-24 19:52:17,418 | INFO     | extracted standard info from prmon json
[2025-10-24 21:53:15] 2025-10-24 19:52:17,418 | INFO     | extracted standard memory fields from prmon json
[2025-10-24 21:53:15] 2025-10-24 19:52:17,418 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-24 21:53:15] 2025-10-24 19:52:17,418 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-24 21:53:15] 2025-10-24 19:52:17,418 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-24 21:53:15] 2025-10-24 19:52:17,419 | INFO     | fitting pss+swap vs Time
[2025-10-24 21:53:15] 2025-10-24 19:52:17,419 | INFO     | sum of square deviations: 177275882.0
[2025-10-24 21:53:15] 2025-10-24 19:52:17,419 | INFO     | sum of deviations: -17079881233.0
[2025-10-24 21:53:15] 2025-10-24 19:52:17,419 | INFO     | mean x: 1761332887.0
[2025-10-24 21:53:15] 2025-10-24 19:52:17,419 | INFO     | mean y: 2526946.8313253014
[2025-10-24 21:53:15] 2025-10-24 19:52:17,419 | INFO     | -- intersect: 169700492526.4752
[2025-10-24 21:53:15] 2025-10-24 19:52:17,419 | INFO     | intersect: 169700492526.4752
[2025-10-24 21:53:15] 2025-10-24 19:52:17,419 | INFO     | chi2: 0.04881011844732565
[2025-10-24 21:53:15] 2025-10-24 19:52:17,419 | INFO     | -- intersect: 169700492526.4752
[2025-10-24 21:53:15] 2025-10-24 19:52:17,419 | INFO     | current memory leak: -96.35 B/s (using 83 data points, chi2=0.05)
[2025-10-24 21:53:15] 2025-10-24 19:52:17,419 | INFO     | could have reported an average CPU frequency of 4119 MHz (7 samples)
[2025-10-24 21:53:15] 2025-10-24 19:52:17,419 | INFO     | ..............................
[2025-10-24 21:53:15] 2025-10-24 19:52:17,419 | INFO     | . Timing measurements:
[2025-10-24 21:53:15] 2025-10-24 19:52:17,419 | INFO     | . get job = 0 s
[2025-10-24 21:53:15] 2025-10-24 19:52:17,419 | INFO     | . initial setup = 1 s
[2025-10-24 21:53:15] 2025-10-24 19:52:17,419 | INFO     | . payload setup = 2 s
[2025-10-24 21:53:15] 2025-10-24 19:52:17,419 | INFO     | . stage-in = 0 s
[2025-10-24 21:53:15] 2025-10-24 19:52:17,419 | INFO     | . payload execution = 5451 s
[2025-10-24 21:53:15] 2025-10-24 19:52:17,419 | INFO     | . stage-out = 0 s
[2025-10-24 21:53:15] 2025-10-24 19:52:17,419 | INFO     | . log creation = 0 s
[2025-10-24 21:53:15] 2025-10-24 19:52:17,419 | INFO     | ..............................
[2025-10-24 21:53:15] 2025-10-24 19:52:17,451 | INFO     | 
[2025-10-24 21:53:15] 2025-10-24 19:52:17,451 | INFO     | job summary report
[2025-10-24 21:53:15] 2025-10-24 19:52:17,451 | INFO     | --------------------------------------------------
[2025-10-24 21:53:15] 2025-10-24 19:52:17,451 | INFO     | PanDA job id: 6855196640
[2025-10-24 21:53:15] 2025-10-24 19:52:17,451 | INFO     | task id: 46771637
[2025-10-24 21:53:15] 2025-10-24 19:52:17,451 | INFO     | errors: (none)
[2025-10-24 21:53:15] 2025-10-24 19:52:17,451 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-24 21:53:15] 2025-10-24 19:52:17,451 | INFO     | pilot state: finished 
[2025-10-24 21:53:15] 2025-10-24 19:52:17,451 | INFO     | transexitcode: 0
[2025-10-24 21:53:15] 2025-10-24 19:52:17,451 | INFO     | exeerrorcode: 0
[2025-10-24 21:53:15] 2025-10-24 19:52:17,451 | INFO     | exeerrordiag: 
[2025-10-24 21:53:15] 2025-10-24 19:52:17,451 | INFO     | exitcode: 0
[2025-10-24 21:53:15] 2025-10-24 19:52:17,451 | INFO     | exitmsg: OK
[2025-10-24 21:53:15] 2025-10-24 19:52:17,451 | INFO     | cpuconsumptiontime: 15768 s
[2025-10-24 21:53:15] 2025-10-24 19:52:17,451 | INFO     | nevents: 400
[2025-10-24 21:53:15] 2025-10-24 19:52:17,451 | INFO     | neventsw: 0
[2025-10-24 21:53:15] 2025-10-24 19:52:17,451 | INFO     | pid: 3448694
[2025-10-24 21:53:15] 2025-10-24 19:52:17,451 | INFO     | pgrp: 3448694
[2025-10-24 21:53:15] 2025-10-24 19:52:17,451 | INFO     | corecount: 3
[2025-10-24 21:53:15] 2025-10-24 19:52:17,451 | INFO     | event service: False
[2025-10-24 21:53:15] 2025-10-24 19:52:17,451 | INFO     | sizes: {0: 2348887, 3: 2349149, 11: 2349177, 5458: 2375909, 5459: 2384913, 5460: 2384969, 5463: 2385291}
[2025-10-24 21:53:15] 2025-10-24 19:52:17,451 | INFO     | --------------------------------------------------
[2025-10-24 21:53:15] 2025-10-24 19:52:17,451 | INFO     | 
[2025-10-24 21:53:15] 2025-10-24 19:52:17,451 | INFO     | executing command: ls -lF /local/data/boinc/slots/0
[2025-10-24 21:53:15] 2025-10-24 19:52:17,464 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-24 21:53:15] 2025-10-24 19:52:17,464 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-24 21:53:15] 2025-10-24 19:52:17,464 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-24 21:53:15] 2025-10-24 19:52:17,464 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-24 21:53:15] 2025-10-24 19:52:17,464 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-24 21:53:15] 2025-10-24 19:52:17,464 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-24 21:53:15] 2025-10-24 19:52:17,464 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-24 21:53:15] 2025-10-24 19:52:17,464 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-24 21:53:15] 2025-10-24 19:52:17,464 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-24 21:53:15] 2025-10-24 19:52:17,464 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-24 21:53:15] 2025-10-24 19:52:17,464 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-24 21:53:15] 2025-10-24 19:52:17,464 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-24 21:53:15] 2025-10-24 19:52:17,464 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-24 21:53:15] 2025-10-24 19:52:17,464 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-24 21:53:15] 2025-10-24 19:52:17,464 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-24 21:53:15] 2025-10-24 19:52:17,464 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-24 21:53:15] 2025-10-24 19:52:17,464 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-24 21:53:15] 2025-10-24 19:52:17,464 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-24 21:53:15] 2025-10-24 19:52:17,464 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-24 21:53:15] 2025-10-24 19:52:17,464 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-24 21:53:15] 2025-10-24 19:52:17,465 | INFO     | job 6855196640 has completed (purged errors)
[2025-10-24 21:53:15] 2025-10-24 19:52:17,465 | INFO     | overall cleanup function is called
[2025-10-24 21:53:15] 2025-10-24 19:52:18,471 | INFO     | --- collectZombieJob: --- 10, [3448694]
[2025-10-24 21:53:15] 2025-10-24 19:52:18,471 | INFO     | zombie collector waiting for pid 3448694
[2025-10-24 21:53:15] 2025-10-24 19:52:18,471 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-24 21:53:15] 2025-10-24 19:52:18,471 | INFO     | collected zombie processes
[2025-10-24 21:53:15] 2025-10-24 19:52:18,471 | INFO     | will attempt to kill all subprocesses of pid=3448694
[2025-10-24 21:53:15] 2025-10-24 19:52:18,523 | INFO     | process IDs to be killed: [3448694] (in reverse order)
[2025-10-24 21:53:15] 2025-10-24 19:52:18,550 | WARNING  | found no corresponding commands to process id(s)
[2025-10-24 21:53:15] 2025-10-24 19:52:18,551 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-24 21:53:15] 2025-10-24 19:52:18,553 | INFO     | did not find any defunct processes belonging to 3448694
[2025-10-24 21:53:15] 2025-10-24 19:52:18,556 | INFO     | did not find any defunct processes belonging to 3448694
[2025-10-24 21:53:15] 2025-10-24 19:52:18,556 | INFO     | ready for new job
[2025-10-24 21:53:15] 2025-10-24 19:52:18,556 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-24 21:53:15] 2025-10-24 19:52:18,557 | INFO     | ***************************************
[2025-10-24 21:53:15] 2025-10-24 19:52:18,557 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-24 21:53:15] 2025-10-24 19:52:18,557 | INFO     | ***************************************
[2025-10-24 21:53:15] 2025-10-24 19:52:18,557 | INFO     | 
[2025-10-24 21:53:15] 2025-10-24 19:52:18,558 | INFO     | architecture information:
[2025-10-24 21:53:15] 2025-10-24 19:52:18,558 | INFO     | executing command: cat /etc/os-release
[2025-10-24 21:53:15] 2025-10-24 19:52:18,567 | INFO     | cat /etc/os-release:
[2025-10-24 21:53:15] NAME="CentOS Linux"
[2025-10-24 21:53:15] VERSION="7 (Core)"
[2025-10-24 21:53:15] ID="centos"
[2025-10-24 21:53:15] ID_LIKE="rhel fedora"
[2025-10-24 21:53:15] VERSION_ID="7"
[2025-10-24 21:53:15] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-24 21:53:15] ANSI_COLOR="0;31"
[2025-10-24 21:53:15] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-24 21:53:15] HOME_URL="https://www.centos.org/"
[2025-10-24 21:53:15] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-24 21:53:15] 
[2025-10-24 21:53:15] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-24 21:53:15] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-24 21:53:15] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-24 21:53:15] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-24 21:53:15] 
[2025-10-24 21:53:15] 2025-10-24 19:52:18,568 | INFO     | ***************************************
[2025-10-24 21:53:15] 2025-10-24 19:52:19,070 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-10-24 21:53:15] 2025-10-24 19:52:19,080 | INFO     | sufficient remaining disk space (354371502080 B)
[2025-10-24 21:53:15] 2025-10-24 19:52:19,080 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-24 21:53:15] 2025-10-24 19:52:19,080 | INFO     | current server update state: UPDATING_FINAL
[2025-10-24 21:53:15] 2025-10-24 19:52:19,080 | INFO     | update_server=False
[2025-10-24 21:53:15] 2025-10-24 19:52:19,080 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-24 21:53:15] 2025-10-24 19:52:19,080 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-24 21:53:15] 2025-10-24 19:52:19,080 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-24 21:53:15] 2025-10-24 19:52:19,080 | INFO     | aborting loop
[2025-10-24 21:53:15] 2025-10-24 19:52:19,097 | INFO     | all data control threads have been joined
[2025-10-24 21:53:15] 2025-10-24 19:52:19,119 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-24 21:53:15] 2025-10-24 19:52:19,639 | INFO     | all payload control threads have been joined
[2025-10-24 21:53:15] 2025-10-24 19:52:20,085 | INFO     | [job] retrieve thread has finished
[2025-10-24 21:53:15] 2025-10-24 19:52:20,086 | INFO     | [job] job monitor thread has finished
[2025-10-24 21:53:15] 2025-10-24 19:52:20,086 | INFO     | [job] queue monitor thread has finished
[2025-10-24 21:53:15] 2025-10-24 19:52:20,102 | INFO     | [data] control thread has finished
[2025-10-24 21:53:15] 2025-10-24 19:52:20,116 | INFO     | [payload] validate_post thread has finished
[2025-10-24 21:53:15] 2025-10-24 19:52:20,318 | INFO     | [data] copytool_in thread has finished
[2025-10-24 21:53:15] 2025-10-24 19:52:20,552 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-24 21:53:15] 2025-10-24 19:52:20,632 | INFO     | [payload] execute_payloads thread has finished
[2025-10-24 21:53:15] 2025-10-24 19:52:20,645 | INFO     | [payload] control thread has finished
[2025-10-24 21:53:15] 2025-10-24 19:52:20,715 | INFO     | all job control threads have been joined
[2025-10-24 21:53:15] 2025-10-24 19:52:20,873 | INFO     | [job] validate thread has finished
[2025-10-24 21:53:15] 2025-10-24 19:52:20,958 | INFO     | [payload] validate_pre thread has finished
[2025-10-24 21:53:15] 2025-10-24 19:52:20,962 | INFO     | [job] create_data_payload thread has finished
[2025-10-24 21:53:15] 2025-10-24 19:52:21,124 | INFO     | [data] copytool_out thread has finished
[2025-10-24 21:53:15] 2025-10-24 19:52:21,202 | INFO     | [payload] failed_post thread has finished
[2025-10-24 21:53:15] 2025-10-24 19:52:21,718 | INFO     | [job] control thread has finished
[2025-10-24 21:53:15] 2025-10-24 19:52:24,557 | INFO     | [data] queue_monitor thread has finished
[2025-10-24 21:53:15] 2025-10-24 19:52:29,309 | INFO     | job.realtimelogging is not enabled
[2025-10-24 21:53:15] 2025-10-24 19:52:30,315 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-24 21:53:15] 2025-10-24 19:52:49,948 | INFO     | PID=3442255 has CPU usage=1.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-24 21:53:15] 2025-10-24 19:52:49,949 | INFO     | found 0 job(s) in 20 queues
[2025-10-24 21:53:15] 2025-10-24 19:52:49,949 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-24 21:53:15] 2025-10-24 19:52:49,949 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-24 21:53:15] 2025-10-24 19:53:08,396 | INFO     | [monitor] cgroup control has ended
[2025-10-24 21:53:15] 2025-10-24 19:53:10,096 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140152654186304)>', '<ExcThread(monitor, started 140151871227648)>']
[2025-10-24 21:53:15] 2025-10-24 19:53:11,055 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-24 21:53:15] 2025-10-24 19:53:11,055 | INFO     | [monitor] control thread has ended
[2025-10-24 21:53:15] 2025-10-24 19:53:15,121 | INFO     | all workflow threads have been joined
[2025-10-24 21:53:15] 2025-10-24 19:53:15,121 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-24 21:53:15] 2025-10-24 19:53:15,122 | INFO     | traces error code: 0
[2025-10-24 21:53:15] 2025-10-24 19:53:15,122 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-24 21:53:15] 2025-10-24 19:53:15,169 [wrapper] ==== pilot stdout END ====
[2025-10-24 21:53:15] 2025-10-24 19:53:15,172 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-24 21:53:15] 2025-10-24 19:53:15,174 [wrapper] pilotpid: 3442255
[2025-10-24 21:53:15] 2025-10-24 19:53:15,176 [wrapper] Pilot exit status: 0
[2025-10-24 21:53:15] 2025-10-24 19:53:15,184 [wrapper] pandaids: 6855196640
[2025-10-24 21:53:15] 2025-10-24 19:53:15,202 [wrapper] cleanup supervisor_pilot 3462964 3442256
[2025-10-24 21:53:15] 2025-10-24 19:53:15,204 [wrapper] Test setup, not cleaning
[2025-10-24 21:53:15] 2025-10-24 19:53:15,207 [wrapper] apfmon messages muted
[2025-10-24 21:53:15] 2025-10-24 19:53:15,209 [wrapper] ==== wrapper stdout END ====
[2025-10-24 21:53:15] 2025-10-24 19:53:15,211 [wrapper] ==== wrapper stderr END ====
[2025-10-24 21:53:15]  *** Error codes and diagnostics ***
[2025-10-24 21:53:15]     "exeErrorCode": 0,
[2025-10-24 21:53:15]     "exeErrorDiag": "",
[2025-10-24 21:53:15]     "pilotErrorCode": 0,
[2025-10-24 21:53:15]     "pilotErrorDiag": "",
[2025-10-24 21:53:15]  *** Listing of results directory ***
[2025-10-24 21:53:15] total 435636
[2025-10-24 21:53:15] -rw-r--r-- 1 boinc boinc    557409 Oct 23 23:32 pilot3.tar.gz
[2025-10-24 21:53:15] -rw-r--r-- 1 boinc boinc      5112 Oct 23 23:42 queuedata.json
[2025-10-24 21:53:15] -rwx------ 1 boinc boinc     36292 Oct 23 23:45 runpilot2-wrapper.sh
[2025-10-24 21:53:15] -rw-r--r-- 1 boinc boinc       100 Oct 24 20:20 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-24 21:53:15] -rwxr-xr-x 1 boinc boinc      7986 Oct 24 20:20 run_atlas
[2025-10-24 21:53:15] -rw-r--r-- 1 boinc boinc       105 Oct 24 20:20 job.xml
[2025-10-24 21:53:15] -rw-r--r-- 2 boinc boinc 229680399 Oct 24 20:20 EVNT.46771634._004493.pool.root.1
[2025-10-24 21:53:15] -rw-r--r-- 2 boinc boinc    569691 Oct 24 20:20 input.tar.gz
[2025-10-24 21:53:15] -rw-r--r-- 2 boinc boinc     15120 Oct 24 20:20 start_atlas.sh
[2025-10-24 21:53:15] drwxrwx--x 2 boinc boinc      4096 Oct 24 20:20 shared
[2025-10-24 21:53:15] -rw-r--r-- 1 boinc boinc         0 Oct 24 20:20 boinc_setup_complete
[2025-10-24 21:53:15] -rw-r--r-- 1 boinc boinc      6441 Oct 24 20:20 init_data.xml
[2025-10-24 21:53:15] -rw-r--r-- 1 boinc boinc         0 Oct 24 20:20 boinc_lockfile
[2025-10-24 21:53:15] -rw-r--r-- 1 boinc boinc      2561 Oct 24 20:20 pandaJob.out
[2025-10-24 21:53:15] -rw------- 1 boinc boinc    978605 Oct 24 20:21 agis_schedconf.cvmfs.json
[2025-10-24 21:53:15] -rw------- 1 boinc boinc   1560772 Oct 24 20:21 agis_ddmendpoints.agis.ALL.json
[2025-10-24 21:53:15] drwx------ 5 boinc boinc      4096 Oct 24 20:21 pilot3
[2025-10-24 21:53:15] -rw------- 1 boinc boinc 210367423 Oct 24 21:51 HITS.46771637._112572.pool.root.1
[2025-10-24 21:53:15] -rw-r--r-- 1 boinc boinc       529 Oct 24 21:51 boinc_task_state.xml
[2025-10-24 21:53:15] -rw------- 1 boinc boinc      1022 Oct 24 21:52 memory_monitor_summary.json
[2025-10-24 21:53:15] -rw------- 1 boinc boinc    269297 Oct 24 21:52 log.46771637._112572.job.log.tgz.1
[2025-10-24 21:53:15] -rw------- 1 boinc boinc      7777 Oct 24 21:52 heartbeat.json
[2025-10-24 21:53:15] -rw------- 1 boinc boinc        95 Oct 24 21:52 pilot_heartbeat.json
[2025-10-24 21:53:15] -rw-r--r-- 1 boinc boinc      8192 Oct 24 21:53 boinc_mmap_file
[2025-10-24 21:53:15] -rw-r--r-- 1 boinc boinc        27 Oct 24 21:53 wrapper_checkpoint.txt
[2025-10-24 21:53:15] -rw------- 1 boinc boinc      4824 Oct 24 21:53 pilotlog.txt
[2025-10-24 21:53:15] -rw------- 1 boinc boinc    800197 Oct 24 21:53 log.46771637._112572.job.log.1
[2025-10-24 21:53:15] -rw------- 1 boinc boinc       357 Oct 24 21:53 output.list
[2025-10-24 21:53:15] -rw-r--r-- 1 boinc boinc       620 Oct 24 21:53 runtime_log
[2025-10-24 21:53:15] -rw------- 1 boinc boinc   1085440 Oct 24 21:53 result.tar.gz
[2025-10-24 21:53:15] -rw-r--r-- 1 boinc boinc      8787 Oct 24 21:53 runtime_log.err
[2025-10-24 21:53:15] -rw------- 1 boinc boinc       661 Oct 24 21:53 cRfKDmlIIW8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmvt9NDmDLa1An.diag
[2025-10-24 21:53:15] -rw-r--r-- 1 boinc boinc     21681 Oct 24 21:53 stderr.txt
[2025-10-24 21:53:15] HITS file was successfully produced:
[2025-10-24 21:53:15] -rw------- 1 boinc boinc 210367423 Oct 24 21:51 shared/HITS.pool.root.1
[2025-10-24 21:53:15]  *** Contents of shared directory: ***
[2025-10-24 21:53:15] total 431384
[2025-10-24 21:53:15] -rw-r--r-- 2 boinc boinc 229680399 Oct 24 20:20 ATLAS.root_0
[2025-10-24 21:53:15] -rw-r--r-- 2 boinc boinc    569691 Oct 24 20:20 input.tar.gz
[2025-10-24 21:53:15] -rw-r--r-- 2 boinc boinc     15120 Oct 24 20:20 start_atlas.sh
[2025-10-24 21:53:15] -rw------- 1 boinc boinc 210367423 Oct 24 21:51 HITS.pool.root.1
[2025-10-24 21:53:15] -rw------- 1 boinc boinc   1085440 Oct 24 21:53 result.tar.gz
21:53:17 (3438537): run_atlas exited; CPU time 15794.520837
21:53:17 (3438537): called boinc_finish(0)

</stderr_txt>
]]>

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