Stderr output

<core_client_version>8.0.2</core_client_version>
<![CDATA[
<stderr_txt>
2025-10-23 19:15:34 (5068): vboxwrapper version 26210
2025-10-23 19:15:34 (5068): BOINC client version: 8.0.2
2025-10-23 19:15:35 (5068): Detected: VirtualBox VboxManage Interface (Version: 6.0.14)
2025-10-23 19:15:35 (5068): Successfully copied 'init_data.xml' to the shared directory.
2025-10-23 19:15:36 (5068): Create VM. (boinc_1bbae085cd7071ff, slot#5)
2025-10-23 19:15:36 (5068): Setting Memory Size for VM. (4600MB)
2025-10-23 19:15:37 (5068): Setting CPU Count for VM. (6)
2025-10-23 19:15:37 (5068): Setting Chipset Options for VM.
2025-10-23 19:15:37 (5068): Setting Graphics Controller Options for VM. (Driver: VBoxVGA, 16MB)
2025-10-23 19:15:38 (5068): Setting Boot Options for VM.
2025-10-23 19:15:39 (5068): Setting Network Configuration for NAT. (Driver: virtio)
2025-10-23 19:15:39 (5068): Enabling VM Network Access.
2025-10-23 19:15:39 (5068): Disabling USB Support for VM.
2025-10-23 19:15:40 (5068): Disabling COM Port Support for VM.
2025-10-23 19:15:40 (5068): Disabling LPT Port Support for VM.
2025-10-23 19:15:41 (5068): Disabling Audio Support for VM.
2025-10-23 19:15:41 (5068): Disabling Clipboard Support for VM.
2025-10-23 19:15:41 (5068): Disabling Drag and Drop Support for VM.
2025-10-23 19:15:42 (5068): Adding storage controller(s) to VM.
2025-10-23 19:15:42 (5068): Adding virtual disk drive to VM. (ATLAS_vbox_3.03_image.vdi)
2025-10-23 19:15:42 (5068): Adding VirtualBox Guest Additions to VM.
2025-10-23 19:15:43 (5068): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2025-10-23 19:15:43 (5068): forwarding host port 14036 to guest port 80
2025-10-23 19:15:44 (5068): Enabling remote desktop for VM.
2025-10-23 19:15:44 (5068): Required extension pack not installed, remote desktop not enabled.
2025-10-23 19:15:44 (5068): Enabling shared directory for VM.
2025-10-23 19:15:45 (5068): Starting VM using VBoxManage interface. (boinc_1bbae085cd7071ff, slot#5)
2025-10-23 19:15:54 (5068): Successfully started VM. (PID = '13724')
2025-10-23 19:15:54 (5068): Reporting VM Process ID to BOINC.
2025-10-23 19:15:54 (5068): Guest Log: BIOS: VirtualBox 6.0.14
2025-10-23 19:15:54 (5068): Guest Log: CPUID EDX: 0x178bfbff
2025-10-23 19:15:54 (5068): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2025-10-23 19:15:54 (5068): VM state change detected. (old = 'poweredoff', new = 'running')
2025-10-23 19:15:54 (5068): Detected: Web Application Enabled (http://localhost:14036)
2025-10-23 19:15:54 (5068): Preference change detected
2025-10-23 19:15:54 (5068): Setting CPU throttle for VM. (100%)
2025-10-23 19:15:54 (5068): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 60 seconds) or (Vbox_job.xml: 900 seconds))
2025-10-23 19:15:56 (5068): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2025-10-23 19:15:56 (5068): Guest Log: BIOS: Booting from Hard Disk...
2025-10-23 19:16:02 (5068): Guest Log: BIOS: KBD: unsupported int 16h function 03
2025-10-23 19:16:02 (5068): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2025-10-23 19:16:02 (5068): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2025-10-23 19:16:02 (5068): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2025-10-23 19:16:02 (5068): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2025-10-23 19:16:02 (5068): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2025-10-23 19:16:02 (5068): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2025-10-23 19:16:02 (5068): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2025-10-23 19:16:02 (5068): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2025-10-23 19:16:02 (5068): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2025-10-23 19:16:02 (5068): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2025-10-23 19:16:02 (5068): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2025-10-23 19:16:02 (5068): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2025-10-23 19:16:02 (5068): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2025-10-23 19:16:02 (5068): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2025-10-23 19:16:02 (5068): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2025-10-23 19:16:02 (5068): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2025-10-23 19:16:02 (5068): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2025-10-23 19:16:02 (5068): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2025-10-23 19:16:02 (5068): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2025-10-23 19:16:02 (5068): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2025-10-23 19:16:02 (5068): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2025-10-23 19:16:02 (5068): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2025-10-23 19:16:02 (5068): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2025-10-23 19:16:02 (5068): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2025-10-23 19:16:02 (5068): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2025-10-23 19:16:02 (5068): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2025-10-23 19:16:02 (5068): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2025-10-23 19:16:02 (5068): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2025-10-23 19:16:02 (5068): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2025-10-23 19:16:02 (5068): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2025-10-23 19:16:02 (5068): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2025-10-23 19:16:19 (5068): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2025-10-23 19:16:19 (5068): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0000000 (size 0x400000)
2025-10-23 19:16:44 (5068): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2025-10-23 19:16:44 (5068): Guest Log: 00:00:00.000391 main     Log opened 2025-10-23T19:16:43.496866000Z
2025-10-23 19:16:44 (5068): Guest Log: 00:00:00.000660 main     OS Product: Linux
2025-10-23 19:16:44 (5068): Guest Log: 00:00:00.000831 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2025-10-23 19:16:44 (5068): Guest Log: 00:00:00.000923 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2025-10-23 19:16:44 (5068): Guest Log: 00:00:00.001025 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2025-10-23 19:16:44 (5068): Guest Log: 00:00:00.001028 main     Process ID: 1342
2025-10-23 19:16:44 (5068): Guest Log: 00:00:00.001030 main     Package type: LINUX_64BITS_GENERIC
2025-10-23 19:16:44 (5068): Guest Log: 00:00:00.007857 main     5.2.32 r132073 started. Verbose level = 0
2025-10-23 19:16:45 (5068): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2025-10-23 19:16:45 (5068): Guest Log: [INFO] Mounting shared directory
2025-10-23 19:16:45 (5068): Guest Log: [INFO] Checking for init_data.xml
2025-10-23 19:16:52 (5068): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2025-10-23 19:16:52 (5068): Guest Log: [INFO] Detected branch: prod
2025-10-23 19:16:53 (5068): Guest Log: This is the prod version of the ATLAS job wrapper
2025-10-23 19:16:53 (5068): Guest Log: Copying input files
2025-10-23 19:16:54 (5068): Guest Log: 00:00:10.025551 timesync vgsvcTimeSyncWorker: Radical guest time change: 25 210 904 948 000ns (GuestNow=1 761 272 214 413 953 000 ns GuestLast=1 761 247 003 509 005 000 ns fSetTimeLastLoop=true )
2025-10-23 19:17:03 (5068): Guest Log: Copied input files into RunAtlas.
2025-10-23 19:17:03 (5068): Guest Log: This VM did not configure a local http proxy via BOINC.
2025-10-23 19:17:03 (5068): Guest Log: Small home clusters do not require a local http proxy but it is suggested if
2025-10-23 19:17:03 (5068): Guest Log: more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
2025-10-23 19:17:03 (5068): Guest Log: Further information can be found at the LHC@home message board.
2025-10-23 19:17:14 (5068): Guest Log: Running cvmfs_config stat atlas.cern.ch
2025-10-23 19:17:14 (5068): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2025-10-23 19:17:14 (5068): Guest Log: 2.6.3.0 1622 0 30192 152058 3 1 3117639 4096000 0 65024 0 0 n/a 0 0 http://s1ihep-cvmfs.openhtc.io:8080/cvmfs/atlas.cern.ch DIRECT 1
2025-10-23 19:17:18 (5068): Guest Log: copied the webapp to /var/www
2025-10-23 19:17:18 (5068): Guest Log: ATHENA_PROC_NUMBER=6
2025-10-23 19:17:18 (5068): Guest Log: ATHENA_CORE_NUMBER=6
2025-10-23 19:17:19 (5068): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2025-10-23 19:17:19 (5068): Guest Log:  *** Starting ATLAS job. (PandaID=6855157389 taskID=46771637) ***
2025-10-23 20:56:15 (5068): Status Report: Elapsed Time: '6000.000000'
2025-10-23 20:56:15 (5068): Status Report: CPU Time: '20938.937500'
2025-10-23 22:36:41 (5068): Status Report: Elapsed Time: '12000.000000'
2025-10-23 22:36:41 (5068): Status Report: CPU Time: '46151.671875'
2025-10-24 00:17:11 (5068): Status Report: Elapsed Time: '18000.000000'
2025-10-24 00:17:11 (5068): Status Report: CPU Time: '69394.156250'
2025-10-24 01:57:37 (5068): Status Report: Elapsed Time: '24000.000000'
2025-10-24 01:57:37 (5068): Status Report: CPU Time: '92632.640625'
2025-10-24 03:38:14 (5068): Status Report: Elapsed Time: '30000.000000'
2025-10-24 03:38:14 (5068): Status Report: CPU Time: '124506.656250'
2025-10-24 05:18:25 (5068): Status Report: Elapsed Time: '36000.000000'
2025-10-24 05:18:25 (5068): Status Report: CPU Time: '159111.015625'
2025-10-24 06:58:38 (5068): Status Report: Elapsed Time: '42000.000000'
2025-10-24 06:58:38 (5068): Status Report: CPU Time: '193351.781250'
2025-10-24 07:21:09 (5068): Guest Log:  *** Job finished ***
2025-10-24 07:21:09 (5068): Guest Log:  *** The last 20 lines of the pilot log: ***
2025-10-24 07:21:09 (5068): Guest Log: 2025-10-24 14:20:34,842 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
2025-10-24 07:21:09 (5068): Guest Log: 2025-10-24 14:20:34,842 | WARNING  | will wait for a maximum of 300 s for threads to finish
2025-10-24 07:21:09 (5068): Guest Log: 2025-10-24 14:21:01,355 | INFO     | [monitor] cgroup control has ended
2025-10-24 07:21:09 (5068): Guest Log: 2025-10-24 14:21:01,600 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139626897237824)>', '<ExcThread(monitor, started 139626157172480)>']
2025-10-24 07:21:09 (5068): Guest Log: 2025-10-24 14:21:02,225 | WARNING  | job_aborted has been set - aborting pilot monitoring
2025-10-24 07:21:09 (5068): Guest Log: 2025-10-24 14:21:02,225 | INFO     | [monitor] control thread has ended
2025-10-24 07:21:09 (5068): Guest Log: 2025-10-24 14:21:06,616 | INFO     | all workflow threads have been joined
2025-10-24 07:21:09 (5068): Guest Log: 2025-10-24 14:21:06,616 | INFO     | end of generic workflow (traces error code: 0)
2025-10-24 07:21:09 (5068): Guest Log: 2025-10-24 14:21:06,617 | INFO     | traces error code: 0
2025-10-24 07:21:09 (5068): Guest Log: 2025-10-24 14:21:06,617 | INFO     | pilot has finished (exit code=0, shell exit code=0)
2025-10-24 07:21:09 (5068): Guest Log: 2025-10-24 14:21:06,855 [wrapper] ==== pilot stdout END ====
2025-10-24 07:21:09 (5068): Guest Log: 2025-10-24 14:21:06,869 [wrapper] ==== wrapper stdout RESUME ====
2025-10-24 07:21:09 (5068): Guest Log: 2025-10-24 14:21:06,882 [wrapper] pilotpid: 6048
2025-10-24 07:21:09 (5068): Guest Log: 2025-10-24 14:21:06,894 [wrapper] Pilot exit status: 0
2025-10-24 07:21:09 (5068): Guest Log: 2025-10-24 14:21:07,002 [wrapper] pandaids: 6855157389
2025-10-24 07:21:09 (5068): Guest Log: 2025-10-24 14:21:07,107 [wrapper] cleanup supervisor_pilot 26917 6049
2025-10-24 07:21:09 (5068): Guest Log: 2025-10-24 14:21:07,120 [wrapper] Test setup, not cleaning
2025-10-24 07:21:09 (5068): Guest Log: 2025-10-24 14:21:07,133 [wrapper] apfmon messages muted
2025-10-24 07:21:09 (5068): Guest Log: 2025-10-24 14:21:07,146 [wrapper] ==== wrapper stdout END ====
2025-10-24 07:21:09 (5068): Guest Log: 2025-10-24 14:21:07,160 [wrapper] ==== wrapper stderr END ====
2025-10-24 07:21:09 (5068): Guest Log:  *** Error codes and diagnostics ***
2025-10-24 07:21:09 (5068): Guest Log:     "exeErrorCode": 0,
2025-10-24 07:21:09 (5068): Guest Log:     "exeErrorDiag": "",
2025-10-24 07:21:09 (5068): Guest Log:     "pilotErrorCode": 0,
2025-10-24 07:21:09 (5068): Guest Log:     "pilotErrorDiag": "",
2025-10-24 07:21:09 (5068): Guest Log:  *** Listing of results directory ***
2025-10-24 07:21:09 (5068): Guest Log: total 219528
2025-10-24 07:21:09 (5068): Guest Log: -rw-r--r--. 1 atlas atlas    557409 Oct 23 20:24 pilot3.tar.gz
2025-10-24 07:21:09 (5068): Guest Log: -rw-r--r--. 1 atlas atlas      5112 Oct 23 21:30 queuedata.json
2025-10-24 07:21:09 (5068): Guest Log: -rwx------. 1 atlas atlas     36292 Oct 23 21:31 runpilot2-wrapper.sh
2025-10-24 07:21:09 (5068): Guest Log: -rwxr-xr-x. 1 atlas atlas      9204 Oct 24 02:17 init_data.xml
2025-10-24 07:21:09 (5068): Guest Log: -rwxr-xr-x. 1 atlas atlas    569689 Oct 24 02:17 input.tar.gz
2025-10-24 07:21:09 (5068): Guest Log: -rwxr-xr-x. 1 atlas atlas     15120 Oct 24 02:17 start_atlas.sh
2025-10-24 07:21:09 (5068): Guest Log: lrwxrwxrwx. 1 atlas atlas        20 Oct 24 02:17 EVNT.46771634._004480.pool.root.1 -> /data/./ATLAS.root_0
2025-10-24 07:21:09 (5068): Guest Log: -rw-r--r--. 1 atlas atlas      2562 Oct 24 02:17 pandaJob.out
2025-10-24 07:21:09 (5068): Guest Log: -rw-------. 1 atlas atlas    978558 Oct 24 02:19 agis_schedconf.cvmfs.json
2025-10-24 07:21:09 (5068): Guest Log: drwx------. 5 atlas atlas      4096 Oct 24 02:19 pilot3
2025-10-24 07:21:09 (5068): Guest Log: -rw-------. 1 atlas atlas 208459859 Oct 24 14:18 HITS.46771637._112258.pool.root.1
2025-10-24 07:21:09 (5068): Guest Log: -rw-------. 1 atlas atlas      1031 Oct 24 14:19 memory_monitor_summary.json
2025-10-24 07:21:09 (5068): Guest Log: -rw-------. 1 atlas atlas   1560772 Oct 24 14:19 agis_ddmendpoints.agis.ALL.json
2025-10-24 07:21:09 (5068): Guest Log: -rw-------. 1 atlas atlas    823884 Oct 24 14:19 log.46771637._112258.job.log.tgz.1
2025-10-24 07:21:09 (5068): Guest Log: -rw-------. 1 atlas atlas        95 Oct 24 14:19 pilot_heartbeat.json
2025-10-24 07:21:09 (5068): Guest Log: -rw-------. 1 atlas atlas      7840 Oct 24 14:20 heartbeat.json
2025-10-24 07:21:09 (5068): Guest Log: -rw-------. 1 atlas atlas      4805 Oct 24 14:21 pilotlog.txt
2025-10-24 07:21:09 (5068): Guest Log: -rw-------. 1 atlas atlas   5423291 Oct 24 14:21 log.46771637._112258.job.log.1
2025-10-24 07:21:09 (5068): Guest Log: -rw-------. 1 atlas atlas       357 Oct 24 14:21 output.list
2025-10-24 07:21:09 (5068): Guest Log: -rw-r--r--. 1 atlas atlas       620 Oct 24 14:21 runtime_log
2025-10-24 07:21:09 (5068): Guest Log: -rw-------. 1 atlas atlas   6266880 Oct 24 14:21 result.tar.gz
2025-10-24 07:21:09 (5068): Guest Log: -rw-r--r--. 1 atlas atlas      8667 Oct 24 14:21 runtime_log.err
2025-10-24 07:21:09 (5068): Guest Log: -rw-------. 1 atlas atlas       671 Oct 24 14:21 micKDmx4HW8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmyp9NDmQZmVZm.diag
2025-10-24 07:21:09 (5068): Guest Log: Looking for outputfile HITS.46771637._112258.pool.root.1
2025-10-24 07:21:09 (5068): Guest Log: HITS file was successfully produced
2025-10-24 07:21:09 (5068): Guest Log: -rw-------. 1 atlas atlas 208459859 Oct 24 14:18 /home/atlas/RunAtlas/HITS.46771637._112258.pool.root.1
2025-10-24 07:21:11 (5068): Guest Log: Successfully finished the ATLAS job!
2025-10-24 07:21:11 (5068): Guest Log: Copying the results back to the shared directory!
2025-10-24 07:21:12 (5068): Guest Log:  *** Contents of shared directory: ***
2025-10-24 07:21:12 (5068): Guest Log: total 432792
2025-10-24 07:21:12 (5068): Guest Log: -rwxrwxrwx. 1 root root 227846843 Oct 24 02:15 ATLAS.root_0
2025-10-24 07:21:12 (5068): Guest Log: -rwxrwxrwx. 1 root root 208459859 Oct 24 14:21 HITS.pool.root.1
2025-10-24 07:21:12 (5068): Guest Log: -rwxrwxrwx. 1 root root      9204 Oct 24 02:15 init_data.xml
2025-10-24 07:21:12 (5068): Guest Log: -rwxrwxrwx. 1 root root    569689 Oct 24 02:15 input.tar.gz
2025-10-24 07:21:12 (5068): Guest Log: -rwxrwxrwx. 1 root root   6266880 Oct 24 14:21 result.tar.gz
2025-10-24 07:21:12 (5068): Guest Log: -rwxrwxrwx. 1 root root     15120 Oct 24 02:15 start_atlas.sh
2025-10-24 07:21:12 (5068): Guest Log:  *** Success! Shutting down the machine. ***
2025-10-24 07:21:12 (5068): VM Completion File Detected.
2025-10-24 07:21:12 (5068): Powering off VM.
2025-10-24 07:21:14 (5068): Successfully stopped VM.
2025-10-24 07:21:14 (5068): Deregistering VM. (boinc_1bbae085cd7071ff, slot#5)
2025-10-24 07:21:14 (5068): Removing network bandwidth throttle group from VM.
2025-10-24 07:21:15 (5068): Removing VM from VirtualBox.
2025-10-24 07:21:20 (5068): called boinc_finish(0)

</stderr_txt>
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