Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
19:42:13 (2572864): wrapper (7.7.26015): starting
19:42:13 (2572864): wrapper: running run_atlas (--nthreads 8)
[2025-10-23 19:42:13] Arguments: --nthreads 8
[2025-10-23 19:42:13] Threads: 8
[2025-10-23 19:42:13] Checking for CVMFS
[2025-10-23 19:42:13] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-23 19:42:13] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-23 19:42:13] Running cvmfs_config stat atlas.cern.ch
[2025-10-23 19:42:14] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-23 19:42:14] 2.13.2.0 129819 3152 69680 152054 0 61 5159945 39288832 3664 16776704 0 10054335 99.932 765698 17118 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-10-23 19:42:14] CVMFS is ok
[2025-10-23 19:42:14] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-23 19:42:14] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-23 19:42:14] Further information can be found at the LHC@home message board.
[2025-10-23 19:42:14] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-23 19:42:14] Checking for apptainer binary...
[2025-10-23 19:42:14] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-23 19:42:14] Running /usr/bin/apptainer --version
[2025-10-23 19:42:14] apptainer version 1.4.3-1.el9
[2025-10-23 19:42:14] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-23 19:42:14] c-210-16.aglt2.org
[2025-10-23 19:42:14] apptainer works
[2025-10-23 19:42:14] Set ATHENA_PROC_NUMBER=8
[2025-10-23 19:42:14] Set ATHENA_CORE_NUMBER=8
[2025-10-23 19:42:14] Starting ATLAS job with PandaID=6854956760
[2025-10-23 19:42:14] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/2 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-23 21:23:40]  *** The last 200 lines of the pilot log: ***
[2025-10-23 21:23:40]  surl=/tmp/boinchome/slots/2/PanDA_Pilot-6854956760/log.46771637._109805.job.log.tgz.1
[2025-10-23 21:23:40]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/79/bc/log.46771637._109805.job.log.tgz.1
[2025-10-23 21:23:40]  workdir=None
[2025-10-23 21:23:40] ]
[2025-10-23 21:23:40] 2025-10-24 01:22:57,991 | INFO     | transferring file log.46771637._109805.job.log.tgz.1 from /tmp/boinchome/slots/2/PanDA_Pilot-6854956760/log.46771637._109805.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-10-23 21:23:40] 2025-10-24 01:22:57,992 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/2/PanDA_Pilot-6854956760/log.46771637._109805.job.log.tgz.1 /tmp/boinchome/slots/2/log.46771637._109805.job
[2025-10-23 21:23:40] 2025-10-24 01:22:58,010 | INFO     | adding to output.list: log.46771637._109805.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/79/bc/log.46771637._109805.job.log.tg
[2025-10-23 21:23:40] 2025-10-24 01:22:58,012 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-10-23 21:23:40] 2025-10-24 01:22:58,012 | INFO     | summary of transferred files:
[2025-10-23 21:23:40] 2025-10-24 01:22:58,012 | INFO     |  -- lfn=log.46771637._109805.job.log.tgz.1, status_code=0, status=transferred
[2025-10-23 21:23:40] 2025-10-24 01:22:58,012 | INFO     | stage-out finished correctly
[2025-10-23 21:23:40] 2025-10-24 01:22:58,052 | INFO     | time since job start (6034s) is within the limit (172800.0s)
[2025-10-23 21:23:40] 2025-10-24 01:22:58,149 | WARNING  | process 2582904 can no longer be monitored (due to stat problems) - aborting
[2025-10-23 21:23:40] 2025-10-24 01:22:58,150 | INFO     | using path: /tmp/boinchome/slots/2/PanDA_Pilot-6854956760/memory_monitor_summary.json (trf name=prmon)
[2025-10-23 21:23:40] 2025-10-24 01:22:58,369 | INFO     | number of running child processes to parent process 2582904: 1
[2025-10-23 21:23:40] 2025-10-24 01:22:58,369 | INFO     | maximum number of monitored processes: 6
[2025-10-23 21:23:40] 2025-10-24 01:23:00,069 | INFO     | time since job start (6036s) is within the limit (172800.0s)
[2025-10-23 21:23:40] 2025-10-24 01:23:00,872 | INFO     | monitor loop #447: job 0:6854956760 is in state 'finished'
[2025-10-23 21:23:40] 2025-10-24 01:23:00,872 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-23 21:23:40] 2025-10-24 01:23:01,231 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-10-23 21:23:40] 2025-10-24 01:23:02,074 | INFO     | time since job start (6038s) is within the limit (172800.0s)
[2025-10-23 21:23:40] 2025-10-24 01:23:03,375 | INFO     | monitor loop #448: job 0:6854956760 is in state 'finished'
[2025-10-23 21:23:40] 2025-10-24 01:23:03,376 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-23 21:23:40] 2025-10-24 01:23:03,976 | INFO     | job 6854956760 has state=finished
[2025-10-23 21:23:40] 2025-10-24 01:23:03,976 | INFO     | preparing for final server update for job 6854956760 in state='finished'
[2025-10-23 21:23:40] 2025-10-24 01:23:03,977 | INFO     | this job has now completed (state=finished)
[2025-10-23 21:23:40] 2025-10-24 01:23:03,977 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-10-23 21:23:40] 2025-10-24 01:23:03,977 | INFO     | log transfer has been attempted: DONE
[2025-10-23 21:23:40] 2025-10-24 01:23:03,977 | INFO     | job 6854956760 has finished - writing final server update
[2025-10-23 21:23:40] 2025-10-24 01:23:03,977 | INFO     | total number of processed events: 400 (read)
[2025-10-23 21:23:40] 2025-10-24 01:23:03,978 | INFO     | executing command: lscpu
[2025-10-23 21:23:40] 2025-10-24 01:23:04,017 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-10-23 21:23:40] 2025-10-24 01:23:04,079 | INFO     | time since job start (6040s) is within the limit (172800.0s)
[2025-10-23 21:23:40] 2025-10-24 01:23:05,878 | INFO     | monitor loop #449: job 0:6854956760 is in state 'finished'
[2025-10-23 21:23:40] 2025-10-24 01:23:05,879 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-23 21:23:40] 2025-10-24 01:23:06,085 | INFO     | time since job start (6042s) is within the limit (172800.0s)
[2025-10-23 21:23:40] 2025-10-24 01:23:07,651 | INFO     | CPU arch script returned: x86-64-v3
[2025-10-23 21:23:40] 2025-10-24 01:23:07,658 | INFO     | found 20 cores (10 cores per socket, 2 sockets) HT, CPU MHz: 2639.99825
[2025-10-23 21:23:40] 2025-10-24 01:23:07,664 | INFO     | using path: /tmp/boinchome/slots/2/PanDA_Pilot-6854956760/memory_monitor_summary.json (trf name=prmon)
[2025-10-23 21:23:40] 2025-10-24 01:23:07,665 | INFO     | extracted standard info from prmon json
[2025-10-23 21:23:40] 2025-10-24 01:23:07,665 | INFO     | extracted standard memory fields from prmon json
[2025-10-23 21:23:40] 2025-10-24 01:23:07,666 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-23 21:23:40] 2025-10-24 01:23:07,666 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-23 21:23:40] 2025-10-24 01:23:07,666 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-23 21:23:40] 2025-10-24 01:23:07,669 | INFO     | fitting pss+swap vs Time
[2025-10-23 21:23:40] 2025-10-24 01:23:07,669 | INFO     | sum of square deviations: 241429643.0
[2025-10-23 21:23:40] 2025-10-24 01:23:07,670 | INFO     | sum of deviations: -15034924827.5
[2025-10-23 21:23:40] 2025-10-24 01:23:07,670 | INFO     | mean x: 1761266049.5
[2025-10-23 21:23:40] 2025-10-24 01:23:07,670 | INFO     | mean y: 2604592.8804347827
[2025-10-23 21:23:40] 2025-10-24 01:23:07,670 | INFO     | -- intersect: 109684673150.88428
[2025-10-23 21:23:40] 2025-10-24 01:23:07,670 | INFO     | intersect: 109684673150.88428
[2025-10-23 21:23:40] 2025-10-24 01:23:07,671 | INFO     | chi2: 0.10388896631414966
[2025-10-23 21:23:40] 2025-10-24 01:23:07,671 | INFO     | -- intersect: 109684673150.88428
[2025-10-23 21:23:40] 2025-10-24 01:23:07,671 | INFO     | current memory leak: -62.27 B/s (using 92 data points, chi2=0.10)
[2025-10-23 21:23:40] 2025-10-24 01:23:07,671 | INFO     | could have reported an average CPU frequency of 2616 MHz (7 samples)
[2025-10-23 21:23:40] 2025-10-24 01:23:07,671 | INFO     | ..............................
[2025-10-23 21:23:40] 2025-10-24 01:23:07,672 | INFO     | . Timing measurements:
[2025-10-23 21:23:40] 2025-10-24 01:23:07,672 | INFO     | . get job = 0 s
[2025-10-23 21:23:40] 2025-10-24 01:23:07,672 | INFO     | . initial setup = 2 s
[2025-10-23 21:23:40] 2025-10-24 01:23:07,672 | INFO     | . payload setup = 5 s
[2025-10-23 21:23:40] 2025-10-24 01:23:07,672 | INFO     | . stage-in = 0 s
[2025-10-23 21:23:40] 2025-10-24 01:23:07,672 | INFO     | . payload execution = 6008 s
[2025-10-23 21:23:40] 2025-10-24 01:23:07,672 | INFO     | . stage-out = 0 s
[2025-10-23 21:23:40] 2025-10-24 01:23:07,672 | INFO     | . log creation = 0 s
[2025-10-23 21:23:40] 2025-10-24 01:23:07,672 | INFO     | ..............................
[2025-10-23 21:23:40] 2025-10-24 01:23:07,781 | INFO     | 
[2025-10-23 21:23:40] 2025-10-24 01:23:07,781 | INFO     | job summary report
[2025-10-23 21:23:40] 2025-10-24 01:23:07,781 | INFO     | --------------------------------------------------
[2025-10-23 21:23:40] 2025-10-24 01:23:07,781 | INFO     | PanDA job id: 6854956760
[2025-10-23 21:23:40] 2025-10-24 01:23:07,781 | INFO     | task id: 46771637
[2025-10-23 21:23:40] 2025-10-24 01:23:07,781 | INFO     | errors: (none)
[2025-10-23 21:23:40] 2025-10-24 01:23:07,782 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-23 21:23:40] 2025-10-24 01:23:07,782 | INFO     | pilot state: finished 
[2025-10-23 21:23:40] 2025-10-24 01:23:07,782 | INFO     | transexitcode: 0
[2025-10-23 21:23:40] 2025-10-24 01:23:07,782 | INFO     | exeerrorcode: 0
[2025-10-23 21:23:40] 2025-10-24 01:23:07,782 | INFO     | exeerrordiag: 
[2025-10-23 21:23:40] 2025-10-24 01:23:07,782 | INFO     | exitcode: 0
[2025-10-23 21:23:40] 2025-10-24 01:23:07,782 | INFO     | exitmsg: OK
[2025-10-23 21:23:40] 2025-10-24 01:23:07,782 | INFO     | cpuconsumptiontime: 45151 s
[2025-10-23 21:23:40] 2025-10-24 01:23:07,782 | INFO     | nevents: 400
[2025-10-23 21:23:40] 2025-10-24 01:23:07,783 | INFO     | neventsw: 0
[2025-10-23 21:23:40] 2025-10-24 01:23:07,783 | INFO     | pid: 2582904
[2025-10-23 21:23:40] 2025-10-24 01:23:07,783 | INFO     | pgrp: 2582904
[2025-10-23 21:23:40] 2025-10-24 01:23:07,783 | INFO     | corecount: 8
[2025-10-23 21:23:40] 2025-10-24 01:23:07,783 | INFO     | event service: False
[2025-10-23 21:23:40] 2025-10-24 01:23:07,783 | INFO     | sizes: {0: 2348935, 4: 2349197, 11: 2349225, 6017: 2376071, 6018: 2385069, 6021: 2385125, 6028: 2385447}
[2025-10-23 21:23:40] 2025-10-24 01:23:07,783 | INFO     | --------------------------------------------------
[2025-10-23 21:23:40] 2025-10-24 01:23:07,783 | INFO     | 
[2025-10-23 21:23:40] 2025-10-24 01:23:07,783 | INFO     | executing command: ls -lF /tmp/boinchome/slots/2
[2025-10-23 21:23:40] 2025-10-24 01:23:07,802 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-23 21:23:40] 2025-10-24 01:23:07,802 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-23 21:23:40] 2025-10-24 01:23:07,802 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-23 21:23:40] 2025-10-24 01:23:07,802 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-23 21:23:40] 2025-10-24 01:23:07,803 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-23 21:23:40] 2025-10-24 01:23:07,803 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-23 21:23:40] 2025-10-24 01:23:07,803 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-23 21:23:40] 2025-10-24 01:23:07,803 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-23 21:23:40] 2025-10-24 01:23:07,803 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-23 21:23:40] 2025-10-24 01:23:07,803 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-23 21:23:40] 2025-10-24 01:23:07,803 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-23 21:23:40] 2025-10-24 01:23:07,804 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-23 21:23:40] 2025-10-24 01:23:07,804 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-23 21:23:40] 2025-10-24 01:23:07,804 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-23 21:23:40] 2025-10-24 01:23:07,804 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-23 21:23:40] 2025-10-24 01:23:07,804 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-23 21:23:40] 2025-10-24 01:23:07,804 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-23 21:23:40] 2025-10-24 01:23:07,804 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-23 21:23:40] 2025-10-24 01:23:07,804 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-23 21:23:40] 2025-10-24 01:23:07,804 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-23 21:23:40] 2025-10-24 01:23:07,805 | INFO     | job 6854956760 has completed (purged errors)
[2025-10-23 21:23:40] 2025-10-24 01:23:07,805 | INFO     | overall cleanup function is called
[2025-10-23 21:23:40] 2025-10-24 01:23:08,812 | INFO     | --- collectZombieJob: --- 10, [2582904]
[2025-10-23 21:23:40] 2025-10-24 01:23:08,813 | INFO     | zombie collector waiting for pid 2582904
[2025-10-23 21:23:40] 2025-10-24 01:23:08,813 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-23 21:23:40] 2025-10-24 01:23:08,813 | INFO     | collected zombie processes
[2025-10-23 21:23:40] 2025-10-24 01:23:08,813 | INFO     | will attempt to kill all subprocesses of pid=2582904
[2025-10-23 21:23:40] 2025-10-24 01:23:09,030 | INFO     | process IDs to be killed: [2582904] (in reverse order)
[2025-10-23 21:23:40] 2025-10-24 01:23:09,093 | WARNING  | found no corresponding commands to process id(s)
[2025-10-23 21:23:40] 2025-10-24 01:23:09,094 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-23 21:23:40] 2025-10-24 01:23:09,100 | INFO     | did not find any defunct processes belonging to 2582904
[2025-10-23 21:23:40] 2025-10-24 01:23:09,105 | INFO     | did not find any defunct processes belonging to 2582904
[2025-10-23 21:23:40] 2025-10-24 01:23:09,105 | INFO     | ready for new job
[2025-10-23 21:23:40] 2025-10-24 01:23:09,105 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-23 21:23:40] 2025-10-24 01:23:09,107 | INFO     | ***************************************
[2025-10-23 21:23:40] 2025-10-24 01:23:09,107 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-23 21:23:40] 2025-10-24 01:23:09,107 | INFO     | ***************************************
[2025-10-23 21:23:40] 2025-10-24 01:23:09,108 | INFO     | 
[2025-10-23 21:23:40] 2025-10-24 01:23:09,109 | INFO     | architecture information:
[2025-10-23 21:23:40] 2025-10-24 01:23:09,110 | INFO     | executing command: cat /etc/os-release
[2025-10-23 21:23:40] 2025-10-24 01:23:09,123 | INFO     | cat /etc/os-release:
[2025-10-23 21:23:40] NAME="CentOS Linux"
[2025-10-23 21:23:40] VERSION="7 (Core)"
[2025-10-23 21:23:40] ID="centos"
[2025-10-23 21:23:40] ID_LIKE="rhel fedora"
[2025-10-23 21:23:40] VERSION_ID="7"
[2025-10-23 21:23:40] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-23 21:23:40] ANSI_COLOR="0;31"
[2025-10-23 21:23:40] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-23 21:23:40] HOME_URL="https://www.centos.org/"
[2025-10-23 21:23:40] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-23 21:23:40] 
[2025-10-23 21:23:40] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-23 21:23:40] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-23 21:23:40] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-23 21:23:40] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-23 21:23:40] 
[2025-10-23 21:23:40] 2025-10-24 01:23:09,124 | INFO     | ***************************************
[2025-10-23 21:23:40] 2025-10-24 01:23:09,624 | INFO     | executing command: df -mP /tmp/boinchome/slots/2
[2025-10-23 21:23:40] 2025-10-24 01:23:09,638 | INFO     | sufficient remaining disk space (51702136832 B)
[2025-10-23 21:23:40] 2025-10-24 01:23:09,639 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-23 21:23:40] 2025-10-24 01:23:09,639 | INFO     | current server update state: UPDATING_FINAL
[2025-10-23 21:23:40] 2025-10-24 01:23:09,639 | INFO     | update_server=False
[2025-10-23 21:23:40] 2025-10-24 01:23:09,639 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-23 21:23:40] 2025-10-24 01:23:09,639 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-23 21:23:40] 2025-10-24 01:23:09,640 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-23 21:23:40] 2025-10-24 01:23:09,640 | INFO     | aborting loop
[2025-10-23 21:23:40] 2025-10-24 01:23:10,208 | INFO     | all data control threads have been joined
[2025-10-23 21:23:40] 2025-10-24 01:23:10,389 | INFO     | all payload control threads have been joined
[2025-10-23 21:23:40] 2025-10-24 01:23:10,643 | INFO     | [job] job monitor thread has finished
[2025-10-23 21:23:40] 2025-10-24 01:23:10,645 | INFO     | [job] retrieve thread has finished
[2025-10-23 21:23:40] 2025-10-24 01:23:10,645 | INFO     | [job] queue monitor thread has finished
[2025-10-23 21:23:40] 2025-10-24 01:23:10,729 | INFO     | all job control threads have been joined
[2025-10-23 21:23:40] 2025-10-24 01:23:10,730 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-23 21:23:40] 2025-10-24 01:23:10,932 | INFO     | [payload] validate_post thread has finished
[2025-10-23 21:23:40] 2025-10-24 01:23:10,954 | INFO     | [payload] failed_post thread has finished
[2025-10-23 21:23:40] 2025-10-24 01:23:11,136 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-23 21:23:40] 2025-10-24 01:23:11,156 | INFO     | [data] copytool_in thread has finished
[2025-10-23 21:23:40] 2025-10-24 01:23:11,213 | INFO     | [data] control thread has finished
[2025-10-23 21:23:40] 2025-10-24 01:23:11,225 | INFO     | [job] validate thread has finished
[2025-10-23 21:23:40] 2025-10-24 01:23:11,395 | INFO     | [payload] control thread has finished
[2025-10-23 21:23:40] 2025-10-24 01:23:11,561 | INFO     | [payload] execute_payloads thread has finished
[2025-10-23 21:23:40] 2025-10-24 01:23:11,687 | INFO     | [job] create_data_payload thread has finished
[2025-10-23 21:23:40] 2025-10-24 01:23:11,734 | INFO     | [job] control thread has finished
[2025-10-23 21:23:40] 2025-10-24 01:23:11,763 | INFO     | [payload] validate_pre thread has finished
[2025-10-23 21:23:40] 2025-10-24 01:23:11,840 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-23 21:23:40] 2025-10-24 01:23:13,142 | INFO     | [data] copytool_out thread has finished
[2025-10-23 21:23:40] 2025-10-24 01:23:15,846 | INFO     | [data] queue_monitor thread has finished
[2025-10-23 21:23:40] 2025-10-24 01:23:34,006 | INFO     | [monitor] cgroup control has ended
[2025-10-23 21:23:40] 2025-10-24 01:23:34,864 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139922309728064)>', '<ExcThread(monitor, started 139921805256448)>']
[2025-10-23 21:23:40] 2025-10-24 01:23:39,429 | INFO     | PID=2576521 has CPU usage=5.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-23 21:23:40] 2025-10-24 01:23:39,429 | INFO     | .. there are 5 such processes running
[2025-10-23 21:23:40] 2025-10-24 01:23:39,430 | INFO     | found 0 job(s) in 20 queues
[2025-10-23 21:23:40] 2025-10-24 01:23:39,430 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-23 21:23:40] 2025-10-24 01:23:39,430 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-23 21:23:40] 2025-10-24 01:23:39,431 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-23 21:23:40] 2025-10-24 01:23:39,431 | INFO     | [monitor] control thread has ended
[2025-10-23 21:23:40] 2025-10-24 01:23:39,889 | INFO     | all workflow threads have been joined
[2025-10-23 21:23:40] 2025-10-24 01:23:39,890 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-23 21:23:40] 2025-10-24 01:23:39,890 | INFO     | traces error code: 0
[2025-10-23 21:23:40] 2025-10-24 01:23:39,890 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-23 21:23:40] 2025-10-24 01:23:39,999 [wrapper] ==== pilot stdout END ====
[2025-10-23 21:23:40] 2025-10-24 01:23:40,001 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-23 21:23:40] 2025-10-24 01:23:40,004 [wrapper] pilotpid: 2576521
[2025-10-23 21:23:40] 2025-10-24 01:23:40,006 [wrapper] Pilot exit status: 0
[2025-10-23 21:23:40] 2025-10-24 01:23:40,015 [wrapper] pandaids: 6854956760
[2025-10-23 21:23:40] 2025-10-24 01:23:40,057 [wrapper] cleanup supervisor_pilot 2766606 2576522
[2025-10-23 21:23:40] 2025-10-24 01:23:40,059 [wrapper] Test setup, not cleaning
[2025-10-23 21:23:40] 2025-10-24 01:23:40,062 [wrapper] apfmon messages muted
[2025-10-23 21:23:40] 2025-10-24 01:23:40,064 [wrapper] ==== wrapper stdout END ====
[2025-10-23 21:23:40] 2025-10-24 01:23:40,067 [wrapper] ==== wrapper stderr END ====
[2025-10-23 21:23:40]  *** Error codes and diagnostics ***
[2025-10-23 21:23:40]     "exeErrorCode": 0,
[2025-10-23 21:23:40]     "exeErrorDiag": "",
[2025-10-23 21:23:40]     "pilotErrorCode": 0,
[2025-10-23 21:23:40]     "pilotErrorDiag": "",
[2025-10-23 21:23:40]  *** Listing of results directory ***
[2025-10-23 21:23:40] total 420512
[2025-10-23 21:23:40] -rw-r--r--. 1 boincer umatlas    557409 Oct 23 14:22 pilot3.tar.gz
[2025-10-23 21:23:40] -rw-r--r--. 1 boincer umatlas      5112 Oct 23 14:36 queuedata.json
[2025-10-23 21:23:40] -rwx------. 1 boincer umatlas     36292 Oct 23 14:39 runpilot2-wrapper.sh
[2025-10-23 21:23:40] -rw-r--r--. 1 boincer umatlas       100 Oct 23 19:42 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-23 21:23:40] -rwxr-xr-x. 1 boincer umatlas      7986 Oct 23 19:42 run_atlas
[2025-10-23 21:23:40] -rw-r--r--. 1 boincer umatlas       105 Oct 23 19:42 job.xml
[2025-10-23 21:23:40] -rw-r--r--. 2 boincer umatlas 228244858 Oct 23 19:42 EVNT.46771634._004383.pool.root.1
[2025-10-23 21:23:40] -rw-r--r--. 2 boincer umatlas     15120 Oct 23 19:42 start_atlas.sh
[2025-10-23 21:23:40] drwxrwx--x. 2 boincer umatlas      4096 Oct 23 19:42 shared
[2025-10-23 21:23:40] -rw-r--r--. 2 boincer umatlas    569690 Oct 23 19:42 input.tar.gz
[2025-10-23 21:23:40] -rw-r--r--. 1 boincer umatlas         0 Oct 23 19:42 boinc_lockfile
[2025-10-23 21:23:40] -rw-r--r--. 1 boincer umatlas      2562 Oct 23 19:42 pandaJob.out
[2025-10-23 21:23:40] -rw-------. 1 boincer umatlas    978508 Oct 23 19:42 agis_schedconf.cvmfs.json
[2025-10-23 21:23:40] -rw-------. 1 boincer umatlas   1560740 Oct 23 19:42 agis_ddmendpoints.agis.ALL.json
[2025-10-23 21:23:40] drwx------. 5 boincer umatlas      4096 Oct 23 19:42 pilot3
[2025-10-23 21:23:40] -rw-r--r--. 1 boincer umatlas      6659 Oct 23 21:21 init_data.xml
[2025-10-23 21:23:40] -rw-------. 1 boincer umatlas 195994295 Oct 23 21:22 HITS.46771637._109805.pool.root.1
[2025-10-23 21:23:40] -rw-r--r--. 1 boincer umatlas       530 Oct 23 21:22 boinc_task_state.xml
[2025-10-23 21:23:40] -rw-------. 1 boincer umatlas      1034 Oct 23 21:22 memory_monitor_summary.json
[2025-10-23 21:23:40] -rw-------. 1 boincer umatlas    353949 Oct 23 21:22 log.46771637._109805.job.log.tgz.1
[2025-10-23 21:23:40] -rw-------. 1 boincer umatlas      7821 Oct 23 21:23 heartbeat.json
[2025-10-23 21:23:40] -rw-r--r--. 1 boincer umatlas        27 Oct 23 21:23 wrapper_checkpoint.txt
[2025-10-23 21:23:40] -rw-r--r--. 1 boincer umatlas      8192 Oct 23 21:23 boinc_mmap_file
[2025-10-23 21:23:40] -rw-------. 1 boincer umatlas        95 Oct 23 21:23 pilot_heartbeat.json
[2025-10-23 21:23:40] -rw-------. 1 boincer umatlas      4823 Oct 23 21:23 pilotlog.txt
[2025-10-23 21:23:40] -rw-------. 1 boincer umatlas    880126 Oct 23 21:23 log.46771637._109805.job.log.1
[2025-10-23 21:23:40] -rw-------. 1 boincer umatlas       357 Oct 23 21:23 output.list
[2025-10-23 21:23:40] -rw-r--r--. 1 boincer umatlas       620 Oct 23 21:23 runtime_log
[2025-10-23 21:23:40] -rw-------. 1 boincer umatlas   1249280 Oct 23 21:23 result.tar.gz
[2025-10-23 21:23:40] -rw-r--r--. 1 boincer umatlas      8703 Oct 23 21:23 runtime_log.err
[2025-10-23 21:23:40] -rw-------. 1 boincer umatlas       652 Oct 23 21:23 1fuLDmbOFW8n9Rq4apOajLDm4fhM0noT9bVof3QYDmnujMDmgRYoim.diag
[2025-10-23 21:23:40] -rw-r--r--. 1 boincer umatlas     22289 Oct 23 21:23 stderr.txt
[2025-10-23 21:23:40] HITS file was successfully produced:
[2025-10-23 21:23:40] -rw-------. 1 boincer umatlas 195994295 Oct 23 21:22 shared/HITS.pool.root.1
[2025-10-23 21:23:40]  *** Contents of shared directory: ***
[2025-10-23 21:23:40] total 416100
[2025-10-23 21:23:40] -rw-r--r--. 2 boincer umatlas 228244858 Oct 23 19:42 ATLAS.root_0
[2025-10-23 21:23:40] -rw-r--r--. 2 boincer umatlas     15120 Oct 23 19:42 start_atlas.sh
[2025-10-23 21:23:40] -rw-r--r--. 2 boincer umatlas    569690 Oct 23 19:42 input.tar.gz
[2025-10-23 21:23:40] -rw-------. 1 boincer umatlas 195994295 Oct 23 21:22 HITS.pool.root.1
[2025-10-23 21:23:40] -rw-------. 1 boincer umatlas   1249280 Oct 23 21:23 result.tar.gz
21:23:41 (2572864): run_atlas exited; CPU time 45271.206374
21:23:41 (2572864): called boinc_finish(0)

</stderr_txt>
]]>

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