Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
15:24:48 (720562): wrapper (7.7.26015): starting
15:24:48 (720562): wrapper: running run_atlas (--nthreads 2)
[2025-10-24 15:24:48] Arguments: --nthreads 2
[2025-10-24 15:24:48] Threads: 2
[2025-10-24 15:24:48] Checking for CVMFS
[2025-10-24 15:24:48] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-24 15:24:48] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-24 15:24:48] Running cvmfs_config stat atlas.cern.ch
[2025-10-24 15:24:48] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-24 15:24:48] 2.9.2.0 683593 138 50352 152081 2 56 29037448 36864000 0 130560 0 76892 99.993 7775 796 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-10-24 15:24:48] CVMFS is ok
[2025-10-24 15:24:48] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-24 15:24:48] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-24 15:24:48] Further information can be found at the LHC@home message board.
[2025-10-24 15:24:48] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-24 15:24:48] Checking for apptainer binary...
[2025-10-24 15:24:48] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-24 15:24:48] Running /usr/bin/apptainer --version
[2025-10-24 15:24:48] apptainer version 1.4.1-1.1
[2025-10-24 15:24:48] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-24 15:24:48] legendA165
[2025-10-24 15:24:48] apptainer works
[2025-10-24 15:24:48] Set ATHENA_PROC_NUMBER=2
[2025-10-24 15:24:48] Set ATHENA_CORE_NUMBER=2
[2025-10-24 15:24:48] Starting ATLAS job with PandaID=6854955964
[2025-10-24 15:24:48] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
16:13:51 (742159): wrapper (7.7.26015): starting
16:13:51 (742159): wrapper: running run_atlas (--nthreads 2)
[2025-10-24 16:13:51] Arguments: --nthreads 2
[2025-10-24 16:13:51] Threads: 2
[2025-10-24 16:13:51] This job has been restarted, cleaning up previous attempt
[2025-10-24 16:13:51] Checking for CVMFS
[2025-10-24 16:13:52] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-24 16:13:52] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-24 16:13:52] Running cvmfs_config stat atlas.cern.ch
[2025-10-24 16:13:52] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-24 16:13:52] 2.9.2.0 742283 0 29988 152083 4 1 29048666 36864000 0 130560 0 0 100.000 0 0 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-10-24 16:13:52] CVMFS is ok
[2025-10-24 16:13:52] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-24 16:13:52] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-24 16:13:52] Further information can be found at the LHC@home message board.
[2025-10-24 16:13:52] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-24 16:13:52] Checking for apptainer binary...
[2025-10-24 16:13:52] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-24 16:13:52] Running /usr/bin/apptainer --version
[2025-10-24 16:13:52] apptainer version 1.4.1-1.1
[2025-10-24 16:13:52] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-24 16:13:52] legendA165
[2025-10-24 16:13:52] apptainer works
[2025-10-24 16:13:52] Set ATHENA_PROC_NUMBER=2
[2025-10-24 16:13:52] Set ATHENA_CORE_NUMBER=2
[2025-10-24 16:13:52] Starting ATLAS job with PandaID=6854955964
[2025-10-24 16:13:52] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-24 18:33:23]  *** The last 200 lines of the pilot log: ***
[2025-10-24 18:33:23] 2025-10-24 16:32:13,318 | INFO     | time since job start (8288s) is within the limit (172800.0s)
[2025-10-24 18:33:23] 2025-10-24 16:32:14,497 | INFO     | monitor loop #636: job 0:6854955964 is in state 'finished'
[2025-10-24 18:33:23] 2025-10-24 16:32:14,498 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-24 18:33:23] 2025-10-24 16:32:15,323 | INFO     | time since job start (8290s) is within the limit (172800.0s)
[2025-10-24 18:33:23] 2025-10-24 16:32:16,978 | INFO     | CPU arch script returned: x86-64-v3
[2025-10-24 18:33:23] 2025-10-24 16:32:16,978 | INFO     | found 8 cores (8 cores per socket, 1 socket) , CPU MHz: 4602.1735
[2025-10-24 18:33:23] 2025-10-24 16:32:16,979 | INFO     | using path: /local/data/boinc/slots/0/PanDA_Pilot-6854955964/memory_monitor_summary.json (trf name=prmon)
[2025-10-24 18:33:23] 2025-10-24 16:32:16,979 | INFO     | extracted standard info from prmon json
[2025-10-24 18:33:23] 2025-10-24 16:32:16,979 | INFO     | extracted standard memory fields from prmon json
[2025-10-24 18:33:23] 2025-10-24 16:32:16,979 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-24 18:33:23] 2025-10-24 16:32:16,979 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-24 18:33:23] 2025-10-24 16:32:16,979 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-24 18:33:23] 2025-10-24 16:32:16,980 | INFO     | fitting pss+swap vs Time
[2025-10-24 18:33:23] 2025-10-24 16:32:16,980 | INFO     | sum of square deviations: 779958810.0
[2025-10-24 18:33:23] 2025-10-24 16:32:16,981 | INFO     | sum of deviations: -4965134802.499999
[2025-10-24 18:33:23] 2025-10-24 16:32:16,981 | INFO     | mean x: 1761319388.5
[2025-10-24 18:33:23] 2025-10-24 16:32:16,981 | INFO     | mean y: 2318501.2279411764
[2025-10-24 18:33:23] 2025-10-24 16:32:16,981 | INFO     | -- intersect: 11214690336.811626
[2025-10-24 18:33:23] 2025-10-24 16:32:16,981 | INFO     | intersect: 11214690336.811626
[2025-10-24 18:33:23] 2025-10-24 16:32:16,981 | INFO     | chi2: 1.6798732746313885
[2025-10-24 18:33:23] 2025-10-24 16:32:16,981 | INFO     | sum of square deviations: 697054930.0
[2025-10-24 18:33:23] 2025-10-24 16:32:16,981 | INFO     | sum of deviations: -4571268386.000002
[2025-10-24 18:33:23] 2025-10-24 16:32:16,981 | INFO     | mean x: 1761319236.0
[2025-10-24 18:33:23] 2025-10-24 16:32:16,981 | INFO     | mean y: 2319226.1221374045
[2025-10-24 18:33:23] 2025-10-24 16:32:16,981 | INFO     | -- intersect: 11553005685.194273
[2025-10-24 18:33:23] 2025-10-24 16:32:16,981 | INFO     | intersect: 11553005685.194273
[2025-10-24 18:33:23] 2025-10-24 16:32:16,981 | INFO     | chi2: 1.6791361045916064
[2025-10-24 18:33:23] 2025-10-24 16:32:16,981 | INFO     | current chi2=1.6791361045916064 (change=0.04388247916758936 %)
[2025-10-24 18:33:23] 2025-10-24 16:32:16,981 | INFO     | right removable region: 130
[2025-10-24 18:33:23] 2025-10-24 16:32:16,981 | INFO     | sum of square deviations: 697054930.0
[2025-10-24 18:33:23] 2025-10-24 16:32:16,982 | INFO     | sum of deviations: -20250849722.999992
[2025-10-24 18:33:23] 2025-10-24 16:32:16,982 | INFO     | mean x: 1761319541.0
[2025-10-24 18:33:23] 2025-10-24 16:32:16,982 | INFO     | mean y: 2345910.2137404582
[2025-10-24 18:33:23] 2025-10-24 16:32:16,982 | INFO     | -- intersect: 51172226222.19191
[2025-10-24 18:33:23] 2025-10-24 16:32:16,982 | INFO     | intersect: 51172226222.19191
[2025-10-24 18:33:23] 2025-10-24 16:32:16,982 | INFO     | chi2: 0.24610421401459517
[2025-10-24 18:33:23] 2025-10-24 16:32:16,982 | INFO     | current chi2=0.24610421401459517 (change=85.3498345541215 %)
[2025-10-24 18:33:23] 2025-10-24 16:32:16,982 | INFO     | sum of square deviations: 620244187.5
[2025-10-24 18:33:23] 2025-10-24 16:32:16,982 | INFO     | sum of deviations: -13631678082.500002
[2025-10-24 18:33:23] 2025-10-24 16:32:16,982 | INFO     | mean x: 1761319693.5
[2025-10-24 18:33:23] 2025-10-24 16:32:16,982 | INFO     | mean y: 2332753.6428571427
[2025-10-24 18:33:23] 2025-10-24 16:32:16,982 | INFO     | -- intersect: 38712478767.15882
[2025-10-24 18:33:23] 2025-10-24 16:32:16,982 | INFO     | intersect: 38712478767.15882
[2025-10-24 18:33:23] 2025-10-24 16:32:16,982 | INFO     | chi2: 0.20195300109460623
[2025-10-24 18:33:23] 2025-10-24 16:32:16,983 | INFO     | current chi2=0.20195300109460623 (change=17.9400475106739 %)
[2025-10-24 18:33:23] 2025-10-24 16:32:16,983 | INFO     | left removable region: 20
[2025-10-24 18:33:23] 2025-10-24 16:32:16,983 | INFO     | sum of square deviations: 412686807.5
[2025-10-24 18:33:23] 2025-10-24 16:32:16,983 | INFO     | sum of deviations: 458947164.0
[2025-10-24 18:33:23] 2025-10-24 16:32:16,983 | INFO     | mean x: 1761319815.5
[2025-10-24 18:33:23] 2025-10-24 16:32:16,983 | INFO     | mean y: 2301308.8
[2025-10-24 18:33:23] 2025-10-24 16:32:16,983 | INFO     | -- intersect: -1956454627.9783483
[2025-10-24 18:33:23] 2025-10-24 16:32:16,983 | INFO     | intersect: -1956454627.9783483
[2025-10-24 18:33:23] 2025-10-24 16:32:16,983 | INFO     | chi2: 0.0011997793404832007
[2025-10-24 18:33:23] 2025-10-24 16:32:16,983 | INFO     | -- intersect: -1956454627.9783483
[2025-10-24 18:33:23] 2025-10-24 16:32:16,983 | INFO     | current memory leak: 1.11 B/s (using 110 data points, chi2=0.00)
[2025-10-24 18:33:23] 2025-10-24 16:32:16,983 | INFO     | could have reported an average CPU frequency of 4569 MHz (8 samples)
[2025-10-24 18:33:23] 2025-10-24 16:32:16,983 | INFO     | ..............................
[2025-10-24 18:33:23] 2025-10-24 16:32:16,983 | INFO     | . Timing measurements:
[2025-10-24 18:33:23] 2025-10-24 16:32:16,983 | INFO     | . get job = 0 s
[2025-10-24 18:33:23] 2025-10-24 16:32:16,983 | INFO     | . initial setup = 0 s
[2025-10-24 18:33:23] 2025-10-24 16:32:16,983 | INFO     | . payload setup = 6 s
[2025-10-24 18:33:23] 2025-10-24 16:32:16,983 | INFO     | . stage-in = 0 s
[2025-10-24 18:33:23] 2025-10-24 16:32:16,983 | INFO     | . payload execution = 8254 s
[2025-10-24 18:33:23] 2025-10-24 16:32:16,983 | INFO     | . stage-out = 0 s
[2025-10-24 18:33:23] 2025-10-24 16:32:16,984 | INFO     | . log creation = 0 s
[2025-10-24 18:33:23] 2025-10-24 16:32:16,984 | INFO     | ..............................
[2025-10-24 18:33:23] 2025-10-24 16:32:17,013 | INFO     | 
[2025-10-24 18:33:23] 2025-10-24 16:32:17,013 | INFO     | job summary report
[2025-10-24 18:33:23] 2025-10-24 16:32:17,013 | INFO     | --------------------------------------------------
[2025-10-24 18:33:23] 2025-10-24 16:32:17,013 | INFO     | PanDA job id: 6854955964
[2025-10-24 18:33:23] 2025-10-24 16:32:17,013 | INFO     | task id: 46771637
[2025-10-24 18:33:23] 2025-10-24 16:32:17,013 | INFO     | errors: (none)
[2025-10-24 18:33:23] 2025-10-24 16:32:17,013 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-24 18:33:23] 2025-10-24 16:32:17,013 | INFO     | pilot state: finished 
[2025-10-24 18:33:23] 2025-10-24 16:32:17,013 | INFO     | transexitcode: 0
[2025-10-24 18:33:23] 2025-10-24 16:32:17,013 | INFO     | exeerrorcode: 0
[2025-10-24 18:33:23] 2025-10-24 16:32:17,013 | INFO     | exeerrordiag: 
[2025-10-24 18:33:23] 2025-10-24 16:32:17,013 | INFO     | exitcode: 0
[2025-10-24 18:33:23] 2025-10-24 16:32:17,013 | INFO     | exitmsg: OK
[2025-10-24 18:33:23] 2025-10-24 16:32:17,013 | INFO     | cpuconsumptiontime: 16161 s
[2025-10-24 18:33:23] 2025-10-24 16:32:17,013 | INFO     | nevents: 400
[2025-10-24 18:33:23] 2025-10-24 16:32:17,013 | INFO     | neventsw: 0
[2025-10-24 18:33:23] 2025-10-24 16:32:17,013 | INFO     | pid: 752546
[2025-10-24 18:33:23] 2025-10-24 16:32:17,013 | INFO     | pgrp: 752546
[2025-10-24 18:33:23] 2025-10-24 16:32:17,013 | INFO     | corecount: 2
[2025-10-24 18:33:23] 2025-10-24 16:32:17,013 | INFO     | event service: False
[2025-10-24 18:33:23] 2025-10-24 16:32:17,013 | INFO     | sizes: {0: 2348887, 6: 2349149, 11: 2349177, 8264: 2377176, 8266: 2386236, 8275: 2386374}
[2025-10-24 18:33:23] 2025-10-24 16:32:17,013 | INFO     | --------------------------------------------------
[2025-10-24 18:33:23] 2025-10-24 16:32:17,013 | INFO     | 
[2025-10-24 18:33:23] 2025-10-24 16:32:17,013 | INFO     | executing command: ls -lF /local/data/boinc/slots/0
[2025-10-24 18:33:23] 2025-10-24 16:32:17,023 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-24 18:33:23] 2025-10-24 16:32:17,023 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-24 18:33:23] 2025-10-24 16:32:17,023 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-24 18:33:23] 2025-10-24 16:32:17,023 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-24 18:33:23] 2025-10-24 16:32:17,023 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-24 18:33:23] 2025-10-24 16:32:17,023 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-24 18:33:23] 2025-10-24 16:32:17,023 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-24 18:33:23] 2025-10-24 16:32:17,023 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-24 18:33:23] 2025-10-24 16:32:17,024 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-24 18:33:23] 2025-10-24 16:32:17,024 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-24 18:33:23] 2025-10-24 16:32:17,024 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-24 18:33:23] 2025-10-24 16:32:17,024 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-24 18:33:23] 2025-10-24 16:32:17,024 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-24 18:33:23] 2025-10-24 16:32:17,024 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-24 18:33:23] 2025-10-24 16:32:17,024 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-24 18:33:23] 2025-10-24 16:32:17,024 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-24 18:33:23] 2025-10-24 16:32:17,024 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-24 18:33:23] 2025-10-24 16:32:17,024 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-24 18:33:23] 2025-10-24 16:32:17,024 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-24 18:33:23] 2025-10-24 16:32:17,024 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-24 18:33:23] 2025-10-24 16:32:17,024 | INFO     | job 6854955964 has completed (purged errors)
[2025-10-24 18:33:23] 2025-10-24 16:32:17,024 | INFO     | overall cleanup function is called
[2025-10-24 18:33:23] 2025-10-24 16:32:18,030 | INFO     | --- collectZombieJob: --- 10, [752546]
[2025-10-24 18:33:23] 2025-10-24 16:32:18,030 | INFO     | zombie collector waiting for pid 752546
[2025-10-24 18:33:23] 2025-10-24 16:32:18,030 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-24 18:33:23] 2025-10-24 16:32:18,030 | INFO     | collected zombie processes
[2025-10-24 18:33:23] 2025-10-24 16:32:18,030 | INFO     | will attempt to kill all subprocesses of pid=752546
[2025-10-24 18:33:23] 2025-10-24 16:32:18,071 | INFO     | process IDs to be killed: [752546] (in reverse order)
[2025-10-24 18:33:23] 2025-10-24 16:32:18,093 | WARNING  | found no corresponding commands to process id(s)
[2025-10-24 18:33:23] 2025-10-24 16:32:18,093 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-24 18:33:23] 2025-10-24 16:32:18,094 | INFO     | did not find any defunct processes belonging to 752546
[2025-10-24 18:33:23] 2025-10-24 16:32:18,095 | INFO     | did not find any defunct processes belonging to 752546
[2025-10-24 18:33:23] 2025-10-24 16:32:18,095 | INFO     | ready for new job
[2025-10-24 18:33:23] 2025-10-24 16:32:18,095 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-24 18:33:23] 2025-10-24 16:32:18,096 | INFO     | ***************************************
[2025-10-24 18:33:23] 2025-10-24 16:32:18,096 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-24 18:33:23] 2025-10-24 16:32:18,096 | INFO     | ***************************************
[2025-10-24 18:33:23] 2025-10-24 16:32:18,096 | INFO     | 
[2025-10-24 18:33:23] 2025-10-24 16:32:18,096 | INFO     | architecture information:
[2025-10-24 18:33:23] 2025-10-24 16:32:18,096 | INFO     | executing command: cat /etc/os-release
[2025-10-24 18:33:23] 2025-10-24 16:32:18,105 | INFO     | cat /etc/os-release:
[2025-10-24 18:33:23] NAME="CentOS Linux"
[2025-10-24 18:33:23] VERSION="7 (Core)"
[2025-10-24 18:33:23] ID="centos"
[2025-10-24 18:33:23] ID_LIKE="rhel fedora"
[2025-10-24 18:33:23] VERSION_ID="7"
[2025-10-24 18:33:23] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-24 18:33:23] ANSI_COLOR="0;31"
[2025-10-24 18:33:23] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-24 18:33:23] HOME_URL="https://www.centos.org/"
[2025-10-24 18:33:23] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-24 18:33:23] 
[2025-10-24 18:33:23] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-24 18:33:23] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-24 18:33:23] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-24 18:33:23] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-24 18:33:23] 
[2025-10-24 18:33:23] 2025-10-24 16:32:18,105 | INFO     | ***************************************
[2025-10-24 18:33:23] 2025-10-24 16:32:18,608 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-10-24 18:33:23] 2025-10-24 16:32:18,639 | INFO     | sufficient remaining disk space (180735705088 B)
[2025-10-24 18:33:23] 2025-10-24 16:32:18,639 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-24 18:33:23] 2025-10-24 16:32:18,640 | INFO     | current server update state: UPDATING_FINAL
[2025-10-24 18:33:23] 2025-10-24 16:32:18,640 | INFO     | update_server=False
[2025-10-24 18:33:23] 2025-10-24 16:32:18,640 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-24 18:33:23] 2025-10-24 16:32:18,640 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-24 18:33:23] 2025-10-24 16:32:18,641 | INFO     | aborting loop
[2025-10-24 18:33:23] 2025-10-24 16:32:18,641 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-24 18:33:23] 2025-10-24 16:32:18,641 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-24 18:33:23] 2025-10-24 16:32:18,674 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-24 18:33:23] 2025-10-24 16:32:18,917 | INFO     | all job control threads have been joined
[2025-10-24 18:33:23] 2025-10-24 16:32:18,970 | INFO     | all payload control threads have been joined
[2025-10-24 18:33:23] 2025-10-24 16:32:19,448 | INFO     | all data control threads have been joined
[2025-10-24 18:33:23] 2025-10-24 16:32:19,646 | INFO     | [job] retrieve thread has finished
[2025-10-24 18:33:23] 2025-10-24 16:32:19,647 | INFO     | [job] job monitor thread has finished
[2025-10-24 18:33:23] 2025-10-24 16:32:19,648 | INFO     | [job] queue monitor thread has finished
[2025-10-24 18:33:23] 2025-10-24 16:32:19,923 | INFO     | [job] control thread has finished
[2025-10-24 18:33:23] 2025-10-24 16:32:19,976 | INFO     | [payload] control thread has finished
[2025-10-24 18:33:23] 2025-10-24 16:32:20,031 | INFO     | [job] validate thread has finished
[2025-10-24 18:33:23] 2025-10-24 16:32:20,230 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-24 18:33:23] 2025-10-24 16:32:20,239 | INFO     | [job] create_data_payload thread has finished
[2025-10-24 18:33:23] 2025-10-24 16:32:20,270 | INFO     | [payload] failed_post thread has finished
[2025-10-24 18:33:23] 2025-10-24 16:32:20,295 | INFO     | [payload] validate_pre thread has finished
[2025-10-24 18:33:23] 2025-10-24 16:32:20,374 | INFO     | [data] copytool_in thread has finished
[2025-10-24 18:33:23] 2025-10-24 16:32:20,455 | INFO     | [data] control thread has finished
[2025-10-24 18:33:23] 2025-10-24 16:32:20,648 | INFO     | [data] copytool_out thread has finished
[2025-10-24 18:33:23] 2025-10-24 16:32:20,781 | INFO     | [payload] validate_post thread has finished
[2025-10-24 18:33:23] 2025-10-24 16:32:21,094 | INFO     | [payload] execute_payloads thread has finished
[2025-10-24 18:33:23] 2025-10-24 16:32:22,681 | INFO     | [data] queue_monitor thread has finished
[2025-10-24 18:33:23] 2025-10-24 16:32:48,490 | INFO     | PID=746120 has CPU usage=1.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-10-24 18:33:23] 2025-10-24 16:32:48,490 | INFO     | found 0 job(s) in 20 queues
[2025-10-24 18:33:23] 2025-10-24 16:32:48,491 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-24 18:33:23] 2025-10-24 16:32:48,491 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-24 18:33:23] 2025-10-24 16:33:17,237 | INFO     | [monitor] cgroup control has ended
[2025-10-24 18:33:23] 2025-10-24 16:33:17,869 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140012439316288)>', '<ExcThread(monitor, started 140011940853504)>']
[2025-10-24 18:33:23] 2025-10-24 16:33:18,646 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-24 18:33:23] 2025-10-24 16:33:18,647 | INFO     | [monitor] control thread has ended
[2025-10-24 18:33:23] 2025-10-24 16:33:22,895 | INFO     | all workflow threads have been joined
[2025-10-24 18:33:23] 2025-10-24 16:33:22,896 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-24 18:33:23] 2025-10-24 16:33:22,897 | INFO     | traces error code: 0
[2025-10-24 18:33:23] 2025-10-24 16:33:22,897 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-24 18:33:23] 2025-10-24 16:33:22,939 [wrapper] ==== pilot stdout END ====
[2025-10-24 18:33:23] 2025-10-24 16:33:22,941 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-24 18:33:23] 2025-10-24 16:33:22,943 [wrapper] pilotpid: 746120
[2025-10-24 18:33:23] 2025-10-24 16:33:22,945 [wrapper] Pilot exit status: 0
[2025-10-24 18:33:23] 2025-10-24 16:33:22,950 [wrapper] pandaids: 6854955964 6854955964
[2025-10-24 18:33:23] 2025-10-24 16:33:22,965 [wrapper] cleanup supervisor_pilot  775460 746121
[2025-10-24 18:33:23] 2025-10-24 16:33:22,967 [wrapper] Test setup, not cleaning
[2025-10-24 18:33:23] 2025-10-24 16:33:22,969 [wrapper] apfmon messages muted
[2025-10-24 18:33:23] 2025-10-24 16:33:22,971 [wrapper] ==== wrapper stdout END ====
[2025-10-24 18:33:23] 2025-10-24 16:33:22,973 [wrapper] ==== wrapper stderr END ====
[2025-10-24 18:33:23]  *** Error codes and diagnostics ***
[2025-10-24 18:33:23]     "exeErrorCode": 0,
[2025-10-24 18:33:23]     "exeErrorDiag": "",
[2025-10-24 18:33:23]     "pilotErrorCode": 0,
[2025-10-24 18:33:23]     "pilotErrorDiag": "",
[2025-10-24 18:33:23]  *** Listing of results directory ***
[2025-10-24 18:33:23] total 660528
[2025-10-24 18:33:23] drwx------ 5 boinc boinc      4096 Oct  7 09:00 pilot3
[2025-10-24 18:33:23] -rw-r--r-- 1 boinc boinc    557409 Oct 23 19:32 pilot3.tar.gz
[2025-10-24 18:33:23] -rw-r--r-- 1 boinc boinc      5112 Oct 23 20:07 queuedata.json
[2025-10-24 18:33:23] -rwx------ 1 boinc boinc     36292 Oct 23 20:10 runpilot2-wrapper.sh
[2025-10-24 18:33:23] -rw-r--r-- 1 boinc boinc       100 Oct 24 15:24 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-24 18:33:23] -rwxr-xr-x 1 boinc boinc      7986 Oct 24 15:24 run_atlas
[2025-10-24 18:33:23] -rw-r--r-- 1 boinc boinc       105 Oct 24 15:24 job.xml
[2025-10-24 18:33:23] -rw-r--r-- 3 boinc boinc 229172855 Oct 24 15:24 EVNT.46771634._004368.pool.root.1
[2025-10-24 18:33:23] -rw-r--r-- 3 boinc boinc 229172855 Oct 24 15:24 ATLAS.root_0
[2025-10-24 18:33:23] -rw-r--r-- 2 boinc boinc    569687 Oct 24 15:24 input.tar.gz
[2025-10-24 18:33:23] -rw-r--r-- 2 boinc boinc     15120 Oct 24 15:24 start_atlas.sh
[2025-10-24 18:33:23] drwxrwx--x 2 boinc boinc      4096 Oct 24 15:24 shared
[2025-10-24 18:33:23] -rw-r--r-- 1 boinc boinc         0 Oct 24 15:24 boinc_setup_complete
[2025-10-24 18:33:23] -rw-r--r-- 1 boinc boinc         0 Oct 24 15:24 boinc_lockfile
[2025-10-24 18:33:23] -rw-r--r-- 1 boinc boinc      6214 Oct 24 16:13 init_data.xml
[2025-10-24 18:33:23] -rw-r--r-- 1 boinc boinc      2561 Oct 24 16:13 pandaJob.out
[2025-10-24 18:33:23] -rw------- 1 boinc boinc    978596 Oct 24 16:14 agis_schedconf.cvmfs.json
[2025-10-24 18:33:23] -rw------- 1 boinc boinc 211191635 Oct 24 18:31 HITS.46771637._109466.pool.root.1
[2025-10-24 18:33:23] -rw-r--r-- 1 boinc boinc       530 Oct 24 18:31 boinc_task_state.xml
[2025-10-24 18:33:23] -rw------- 1 boinc boinc        96 Oct 24 18:31 pilot_heartbeat.json
[2025-10-24 18:33:23] -rw------- 1 boinc boinc      1020 Oct 24 18:32 memory_monitor_summary.json
[2025-10-24 18:33:23] -rw------- 1 boinc boinc   1560772 Oct 24 18:32 agis_ddmendpoints.agis.ALL.json
[2025-10-24 18:33:23] -rw------- 1 boinc boinc    278409 Oct 24 18:32 log.46771637._109466.job.log.tgz.1
[2025-10-24 18:33:23] -rw------- 1 boinc boinc      7763 Oct 24 18:32 heartbeat.json
[2025-10-24 18:33:23] -rw-r--r-- 1 boinc boinc        28 Oct 24 18:33 wrapper_checkpoint.txt
[2025-10-24 18:33:23] -rw-r--r-- 1 boinc boinc      8192 Oct 24 18:33 boinc_mmap_file
[2025-10-24 18:33:23] -rw------- 1 boinc boinc      4751 Oct 24 18:33 pilotlog.txt
[2025-10-24 18:33:23] -rw------- 1 boinc boinc   1185882 Oct 24 18:33 log.46771637._109466.job.log.1
[2025-10-24 18:33:23] -rw------- 1 boinc boinc       357 Oct 24 18:33 output.list
[2025-10-24 18:33:23] -rw-r--r-- 1 boinc boinc       620 Oct 24 18:33 runtime_log
[2025-10-24 18:33:23] -rw------- 1 boinc boinc   1484800 Oct 24 18:33 result.tar.gz
[2025-10-24 18:33:23] -rw------- 1 boinc boinc       788 Oct 24 18:33 xywLDmdwEW8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDm0N9NDmvlHMRm.diag
[2025-10-24 18:33:23] -rw-r--r-- 1 boinc boinc      8882 Oct 24 18:33 runtime_log.err
[2025-10-24 18:33:23] -rw-r--r-- 1 boinc boinc     23198 Oct 24 18:33 stderr.txt
[2025-10-24 18:33:23] HITS file was successfully produced:
[2025-10-24 18:33:23] -rw------- 1 boinc boinc 211191635 Oct 24 18:31 shared/HITS.pool.root.1
[2025-10-24 18:33:23]  *** Contents of shared directory: ***
[2025-10-24 18:33:23] total 432084
[2025-10-24 18:33:23] -rw-r--r-- 3 boinc boinc 229172855 Oct 24 15:24 ATLAS.root_0
[2025-10-24 18:33:23] -rw-r--r-- 2 boinc boinc    569687 Oct 24 15:24 input.tar.gz
[2025-10-24 18:33:23] -rw-r--r-- 2 boinc boinc     15120 Oct 24 15:24 start_atlas.sh
[2025-10-24 18:33:23] -rw------- 1 boinc boinc 211191635 Oct 24 18:31 HITS.pool.root.1
[2025-10-24 18:33:23] -rw------- 1 boinc boinc   1484800 Oct 24 18:33 result.tar.gz
18:33:24 (742159): run_atlas exited; CPU time 16208.187995
18:33:24 (742159): called boinc_finish(0)

</stderr_txt>
]]>

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