Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
15:46:16 (3354721): wrapper (7.7.26015): starting
15:46:16 (3354721): wrapper: running run_atlas (--nthreads 3)
[2025-10-24 15:46:16] Arguments: --nthreads 3
[2025-10-24 15:46:16] Threads: 3
[2025-10-24 15:46:16] Checking for CVMFS
[2025-10-24 15:46:17] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-24 15:46:17] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-24 15:46:17] Running cvmfs_config stat atlas.cern.ch
[2025-10-24 15:46:17] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-24 15:46:17] 2.9.2.0 1719162 5246 82480 152081 0 56 5159049 36864001 0 130560 0 3951867 99.989 197416 1052 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-10-24 15:46:17] CVMFS is ok
[2025-10-24 15:46:17] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-24 15:46:17] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-24 15:46:17] Further information can be found at the LHC@home message board.
[2025-10-24 15:46:17] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-24 15:46:17] Checking for apptainer binary...
[2025-10-24 15:46:17] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-24 15:46:17] Running /usr/bin/apptainer --version
[2025-10-24 15:46:17] apptainer version 1.4.1-1.1
[2025-10-24 15:46:17] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-24 15:46:17] cosA127a
[2025-10-24 15:46:17] apptainer works
[2025-10-24 15:46:17] Set ATHENA_PROC_NUMBER=3
[2025-10-24 15:46:17] Set ATHENA_CORE_NUMBER=3
[2025-10-24 15:46:17] Starting ATLAS job with PandaID=6854794261
[2025-10-24 15:46:17] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-24 17:18:46]  *** The last 200 lines of the pilot log: ***
[2025-10-24 17:18:46]  lfn=log.46771637._108807.job.log.tgz.1
[2025-10-24 17:18:46]  mtime=0
[2025-10-24 17:18:46]  protocol_id=None
[2025-10-24 17:18:46]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-10-24 17:18:46]  replicas=None
[2025-10-24 17:18:46]  scope=mc23_13p6TeV
[2025-10-24 17:18:46]  status=None
[2025-10-24 17:18:46]  status_code=0
[2025-10-24 17:18:46]  storage_token=
[2025-10-24 17:18:46]  surl=/local/data/boinc/slots/0/PanDA_Pilot-6854794261/log.46771637._108807.job.log.tgz.1
[2025-10-24 17:18:46]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/db/97/log.46771637._108807.job.log.tgz.1
[2025-10-24 17:18:46]  workdir=None
[2025-10-24 17:18:46] ]
[2025-10-24 17:18:46] 2025-10-24 15:18:12,417 | INFO     | transferring file log.46771637._108807.job.log.tgz.1 from /local/data/boinc/slots/0/PanDA_Pilot-6854794261/log.46771637._108807.job.log.tgz.1 to /local/data/boinc/
[2025-10-24 17:18:46] 2025-10-24 15:18:12,417 | INFO     | executing command: /usr/bin/env mv /local/data/boinc/slots/0/PanDA_Pilot-6854794261/log.46771637._108807.job.log.tgz.1 /local/data/boinc/slots/0/log.46771637._1088
[2025-10-24 17:18:46] 2025-10-24 15:18:12,428 | INFO     | adding to output.list: log.46771637._108807.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/db/97/log.46771637._108807.job.log.tg
[2025-10-24 17:18:46] 2025-10-24 15:18:12,429 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-10-24 17:18:46] 2025-10-24 15:18:12,429 | INFO     | summary of transferred files:
[2025-10-24 17:18:46] 2025-10-24 15:18:12,429 | INFO     |  -- lfn=log.46771637._108807.job.log.tgz.1, status_code=0, status=transferred
[2025-10-24 17:18:46] 2025-10-24 15:18:12,429 | INFO     | stage-out finished correctly
[2025-10-24 17:18:46] 2025-10-24 15:18:12,458 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-10-24 17:18:46] 2025-10-24 15:18:12,486 | INFO     | job 6854794261 has state=finished
[2025-10-24 17:18:46] 2025-10-24 15:18:12,486 | INFO     | preparing for final server update for job 6854794261 in state='finished'
[2025-10-24 17:18:46] 2025-10-24 15:18:12,486 | INFO     | this job has now completed (state=finished)
[2025-10-24 17:18:46] 2025-10-24 15:18:12,486 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-10-24 17:18:46] 2025-10-24 15:18:12,486 | INFO     | log transfer has been attempted: DONE
[2025-10-24 17:18:46] 2025-10-24 15:18:12,486 | INFO     | job 6854794261 has finished - writing final server update
[2025-10-24 17:18:46] 2025-10-24 15:18:12,486 | INFO     | total number of processed events: 400 (read)
[2025-10-24 17:18:46] 2025-10-24 15:18:12,487 | INFO     | executing command: lscpu
[2025-10-24 17:18:46] 2025-10-24 15:18:12,499 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-10-24 17:18:46] 2025-10-24 15:18:12,577 | INFO     | PID=3358439 has CPU usage=2.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-24 17:18:46] 2025-10-24 15:18:13,577 | INFO     | time since job start (5511s) is within the limit (172800.0s)
[2025-10-24 17:18:46] 2025-10-24 15:18:14,734 | INFO     | CPU arch script returned: x86-64-v3
[2025-10-24 17:18:46] 2025-10-24 15:18:14,735 | INFO     | found 6 cores (6 cores per socket, 1 socket) HT, CPU MHz: 3943.4096666666665
[2025-10-24 17:18:46] 2025-10-24 15:18:14,736 | INFO     | using path: /local/data/boinc/slots/0/PanDA_Pilot-6854794261/memory_monitor_summary.json (trf name=prmon)
[2025-10-24 17:18:46] 2025-10-24 15:18:14,736 | INFO     | extracted standard info from prmon json
[2025-10-24 17:18:46] 2025-10-24 15:18:14,736 | INFO     | extracted standard memory fields from prmon json
[2025-10-24 17:18:46] 2025-10-24 15:18:14,736 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-24 17:18:46] 2025-10-24 15:18:14,736 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-24 17:18:46] 2025-10-24 15:18:14,736 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-24 17:18:46] 2025-10-24 15:18:14,737 | INFO     | fitting pss+swap vs Time
[2025-10-24 17:18:46] 2025-10-24 15:18:14,737 | INFO     | sum of square deviations: 177275882.0
[2025-10-24 17:18:46] 2025-10-24 15:18:14,737 | INFO     | sum of deviations: 1294384925.0000002
[2025-10-24 17:18:46] 2025-10-24 15:18:14,737 | INFO     | mean x: 1761316408.0
[2025-10-24 17:18:46] 2025-10-24 15:18:14,737 | INFO     | mean y: 2344891.4578313255
[2025-10-24 17:18:46] 2025-10-24 15:18:14,737 | INFO     | -- intersect: -12857957259.910679
[2025-10-24 17:18:46] 2025-10-24 15:18:14,737 | INFO     | intersect: -12857957259.910679
[2025-10-24 17:18:46] 2025-10-24 15:18:14,737 | INFO     | chi2: 0.001754393165263596
[2025-10-24 17:18:46] 2025-10-24 15:18:14,738 | INFO     | -- intersect: -12857957259.910679
[2025-10-24 17:18:46] 2025-10-24 15:18:14,738 | INFO     | current memory leak: 7.30 B/s (using 83 data points, chi2=0.00)
[2025-10-24 17:18:46] 2025-10-24 15:18:14,738 | INFO     | could have reported an average CPU frequency of 4093 MHz (7 samples)
[2025-10-24 17:18:46] 2025-10-24 15:18:14,738 | INFO     | ..............................
[2025-10-24 17:18:46] 2025-10-24 15:18:14,738 | INFO     | . Timing measurements:
[2025-10-24 17:18:46] 2025-10-24 15:18:14,738 | INFO     | . get job = 0 s
[2025-10-24 17:18:46] 2025-10-24 15:18:14,738 | INFO     | . initial setup = 1 s
[2025-10-24 17:18:46] 2025-10-24 15:18:14,738 | INFO     | . payload setup = 2 s
[2025-10-24 17:18:46] 2025-10-24 15:18:14,738 | INFO     | . stage-in = 0 s
[2025-10-24 17:18:46] 2025-10-24 15:18:14,738 | INFO     | . payload execution = 5488 s
[2025-10-24 17:18:46] 2025-10-24 15:18:14,738 | INFO     | . stage-out = 0 s
[2025-10-24 17:18:46] 2025-10-24 15:18:14,738 | INFO     | . log creation = 0 s
[2025-10-24 17:18:46] 2025-10-24 15:18:14,738 | INFO     | ..............................
[2025-10-24 17:18:46] 2025-10-24 15:18:14,767 | INFO     | 
[2025-10-24 17:18:46] 2025-10-24 15:18:14,768 | INFO     | job summary report
[2025-10-24 17:18:46] 2025-10-24 15:18:14,768 | INFO     | --------------------------------------------------
[2025-10-24 17:18:46] 2025-10-24 15:18:14,768 | INFO     | PanDA job id: 6854794261
[2025-10-24 17:18:46] 2025-10-24 15:18:14,768 | INFO     | task id: 46771637
[2025-10-24 17:18:46] 2025-10-24 15:18:14,768 | INFO     | errors: (none)
[2025-10-24 17:18:46] 2025-10-24 15:18:14,768 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-24 17:18:46] 2025-10-24 15:18:14,768 | INFO     | pilot state: finished 
[2025-10-24 17:18:46] 2025-10-24 15:18:14,768 | INFO     | transexitcode: 0
[2025-10-24 17:18:46] 2025-10-24 15:18:14,768 | INFO     | exeerrorcode: 0
[2025-10-24 17:18:46] 2025-10-24 15:18:14,768 | INFO     | exeerrordiag: 
[2025-10-24 17:18:46] 2025-10-24 15:18:14,768 | INFO     | exitcode: 0
[2025-10-24 17:18:46] 2025-10-24 15:18:14,768 | INFO     | exitmsg: OK
[2025-10-24 17:18:46] 2025-10-24 15:18:14,768 | INFO     | cpuconsumptiontime: 15851 s
[2025-10-24 17:18:46] 2025-10-24 15:18:14,768 | INFO     | nevents: 400
[2025-10-24 17:18:46] 2025-10-24 15:18:14,768 | INFO     | neventsw: 0
[2025-10-24 17:18:46] 2025-10-24 15:18:14,768 | INFO     | pid: 3364880
[2025-10-24 17:18:46] 2025-10-24 15:18:14,768 | INFO     | pgrp: 3364880
[2025-10-24 17:18:46] 2025-10-24 15:18:14,768 | INFO     | corecount: 3
[2025-10-24 17:18:46] 2025-10-24 15:18:14,768 | INFO     | event service: False
[2025-10-24 17:18:46] 2025-10-24 15:18:14,768 | INFO     | sizes: {0: 2348887, 2: 2349149, 10: 2349177, 5494: 2375909, 5496: 2384969, 5498: 2385107}
[2025-10-24 17:18:46] 2025-10-24 15:18:14,768 | INFO     | --------------------------------------------------
[2025-10-24 17:18:46] 2025-10-24 15:18:14,768 | INFO     | 
[2025-10-24 17:18:46] 2025-10-24 15:18:14,768 | INFO     | executing command: ls -lF /local/data/boinc/slots/0
[2025-10-24 17:18:46] 2025-10-24 15:18:14,779 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-24 17:18:46] 2025-10-24 15:18:14,779 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-24 17:18:46] 2025-10-24 15:18:14,779 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-24 17:18:46] 2025-10-24 15:18:14,779 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-24 17:18:46] 2025-10-24 15:18:14,779 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-24 17:18:46] 2025-10-24 15:18:14,779 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-24 17:18:46] 2025-10-24 15:18:14,779 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-24 17:18:46] 2025-10-24 15:18:14,779 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-24 17:18:46] 2025-10-24 15:18:14,779 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-24 17:18:46] 2025-10-24 15:18:14,779 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-24 17:18:46] 2025-10-24 15:18:14,779 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-24 17:18:46] 2025-10-24 15:18:14,779 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-24 17:18:46] 2025-10-24 15:18:14,779 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-24 17:18:46] 2025-10-24 15:18:14,779 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-24 17:18:46] 2025-10-24 15:18:14,779 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-24 17:18:46] 2025-10-24 15:18:14,779 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-24 17:18:46] 2025-10-24 15:18:14,780 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-24 17:18:46] 2025-10-24 15:18:14,780 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-24 17:18:46] 2025-10-24 15:18:14,780 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-24 17:18:46] 2025-10-24 15:18:14,780 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-24 17:18:46] 2025-10-24 15:18:14,780 | INFO     | job 6854794261 has completed (purged errors)
[2025-10-24 17:18:46] 2025-10-24 15:18:14,780 | INFO     | overall cleanup function is called
[2025-10-24 17:18:46] 2025-10-24 15:18:14,871 | WARNING  | process 3364880 can no longer be monitored (due to stat problems) - aborting
[2025-10-24 17:18:46] 2025-10-24 15:18:14,909 | INFO     | using path: /local/data/boinc/slots/0/memory_monitor_summary.json (trf name=prmon)
[2025-10-24 17:18:46] 2025-10-24 15:18:14,958 | INFO     | number of running child processes to parent process 3364880: 1
[2025-10-24 17:18:46] 2025-10-24 15:18:14,958 | INFO     | maximum number of monitored processes: 6
[2025-10-24 17:18:46] 2025-10-24 15:18:14,958 | INFO     | aborting job monitoring since job object (job id=6854794261) has expired
[2025-10-24 17:18:46] 2025-10-24 15:18:15,786 | INFO     | --- collectZombieJob: --- 10, [3364880]
[2025-10-24 17:18:46] 2025-10-24 15:18:15,786 | INFO     | zombie collector waiting for pid 3364880
[2025-10-24 17:18:46] 2025-10-24 15:18:15,786 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-24 17:18:46] 2025-10-24 15:18:15,786 | INFO     | collected zombie processes
[2025-10-24 17:18:46] 2025-10-24 15:18:15,786 | INFO     | will attempt to kill all subprocesses of pid=3364880
[2025-10-24 17:18:46] 2025-10-24 15:18:15,835 | INFO     | process IDs to be killed: [3364880] (in reverse order)
[2025-10-24 17:18:46] 2025-10-24 15:18:15,862 | WARNING  | found no corresponding commands to process id(s)
[2025-10-24 17:18:46] 2025-10-24 15:18:15,863 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-24 17:18:46] 2025-10-24 15:18:15,864 | INFO     | did not find any defunct processes belonging to 3364880
[2025-10-24 17:18:46] 2025-10-24 15:18:15,866 | INFO     | did not find any defunct processes belonging to 3364880
[2025-10-24 17:18:46] 2025-10-24 15:18:15,866 | INFO     | ready for new job
[2025-10-24 17:18:46] 2025-10-24 15:18:15,866 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-24 17:18:46] 2025-10-24 15:18:15,867 | INFO     | ***************************************
[2025-10-24 17:18:46] 2025-10-24 15:18:15,867 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-24 17:18:46] 2025-10-24 15:18:15,867 | INFO     | ***************************************
[2025-10-24 17:18:46] 2025-10-24 15:18:15,867 | INFO     | 
[2025-10-24 17:18:46] 2025-10-24 15:18:15,867 | INFO     | architecture information:
[2025-10-24 17:18:46] 2025-10-24 15:18:15,867 | INFO     | executing command: cat /etc/os-release
[2025-10-24 17:18:46] 2025-10-24 15:18:15,876 | INFO     | cat /etc/os-release:
[2025-10-24 17:18:46] NAME="CentOS Linux"
[2025-10-24 17:18:46] VERSION="7 (Core)"
[2025-10-24 17:18:46] ID="centos"
[2025-10-24 17:18:46] ID_LIKE="rhel fedora"
[2025-10-24 17:18:46] VERSION_ID="7"
[2025-10-24 17:18:46] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-24 17:18:46] ANSI_COLOR="0;31"
[2025-10-24 17:18:46] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-24 17:18:46] HOME_URL="https://www.centos.org/"
[2025-10-24 17:18:46] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-24 17:18:46] 
[2025-10-24 17:18:46] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-24 17:18:46] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-24 17:18:46] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-24 17:18:46] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-24 17:18:46] 
[2025-10-24 17:18:46] 2025-10-24 15:18:15,876 | INFO     | ***************************************
[2025-10-24 17:18:46] 2025-10-24 15:18:16,379 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-10-24 17:18:46] 2025-10-24 15:18:16,388 | INFO     | sufficient remaining disk space (354407153664 B)
[2025-10-24 17:18:46] 2025-10-24 15:18:16,389 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-24 17:18:46] 2025-10-24 15:18:16,389 | INFO     | current server update state: UPDATING_FINAL
[2025-10-24 17:18:46] 2025-10-24 15:18:16,389 | INFO     | update_server=False
[2025-10-24 17:18:46] 2025-10-24 15:18:16,389 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-24 17:18:46] 2025-10-24 15:18:16,389 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-24 17:18:46] 2025-10-24 15:18:16,389 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-24 17:18:46] 2025-10-24 15:18:16,389 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-24 17:18:46] 2025-10-24 15:18:16,389 | INFO     | aborting loop
[2025-10-24 17:18:46] 2025-10-24 15:18:16,827 | INFO     | all data control threads have been joined
[2025-10-24 17:18:46] 2025-10-24 15:18:17,012 | INFO     | all payload control threads have been joined
[2025-10-24 17:18:46] 2025-10-24 15:18:17,390 | INFO     | [job] job monitor thread has finished
[2025-10-24 17:18:46] 2025-10-24 15:18:17,394 | INFO     | [job] retrieve thread has finished
[2025-10-24 17:18:46] 2025-10-24 15:18:17,394 | INFO     | [job] queue monitor thread has finished
[2025-10-24 17:18:46] 2025-10-24 15:18:17,645 | INFO     | [payload] execute_payloads thread has finished
[2025-10-24 17:18:46] 2025-10-24 15:18:17,681 | INFO     | [data] copytool_in thread has finished
[2025-10-24 17:18:46] 2025-10-24 15:18:17,771 | INFO     | [payload] failed_post thread has finished
[2025-10-24 17:18:46] 2025-10-24 15:18:17,817 | INFO     | all job control threads have been joined
[2025-10-24 17:18:46] 2025-10-24 15:18:17,832 | INFO     | [data] control thread has finished
[2025-10-24 17:18:46] 2025-10-24 15:18:17,864 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-24 17:18:46] 2025-10-24 15:18:18,018 | INFO     | [payload] control thread has finished
[2025-10-24 17:18:46] 2025-10-24 15:18:18,221 | INFO     | [job] validate thread has finished
[2025-10-24 17:18:46] 2025-10-24 15:18:18,278 | INFO     | [payload] validate_post thread has finished
[2025-10-24 17:18:46] 2025-10-24 15:18:18,322 | INFO     | [job] create_data_payload thread has finished
[2025-10-24 17:18:46] 2025-10-24 15:18:18,367 | INFO     | [payload] validate_pre thread has finished
[2025-10-24 17:18:46] 2025-10-24 15:18:18,394 | INFO     | [data] copytool_out thread has finished
[2025-10-24 17:18:46] 2025-10-24 15:18:18,491 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-24 17:18:46] 2025-10-24 15:18:18,822 | INFO     | [job] control thread has finished
[2025-10-24 17:18:46] 2025-10-24 15:18:22,496 | INFO     | [data] queue_monitor thread has finished
[2025-10-24 17:18:46] 2025-10-24 15:18:29,326 | INFO     | [monitor] cgroup control has ended
[2025-10-24 17:18:46] 2025-10-24 15:18:31,304 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140512631412544)>', '<ExcThread(monitor, started 140512350668544)>']
[2025-10-24 17:18:46] 2025-10-24 15:18:36,329 | INFO     | all workflow threads have been joined
[2025-10-24 17:18:46] 2025-10-24 15:18:36,329 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-24 17:18:46] 2025-10-24 15:18:36,329 | INFO     | traces error code: 0
[2025-10-24 17:18:46] 2025-10-24 15:18:36,330 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-24 17:18:46] 2025-10-24 15:18:46,722 | INFO     | PID=3358439 has CPU usage=1.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-24 17:18:46] 2025-10-24 15:18:46,722 | INFO     | found 0 job(s) in 20 queues
[2025-10-24 17:18:46] 2025-10-24 15:18:46,722 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-24 17:18:46] 2025-10-24 15:18:46,722 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-24 17:18:46] 2025-10-24 15:18:46,722 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-24 17:18:46] 2025-10-24 15:18:46,722 | INFO     | [monitor] control thread has ended
[2025-10-24 17:18:46] 2025-10-24 15:18:46,769 [wrapper] ==== pilot stdout END ====
[2025-10-24 17:18:46] 2025-10-24 15:18:46,771 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-24 17:18:46] 2025-10-24 15:18:46,774 [wrapper] pilotpid: 3358439
[2025-10-24 17:18:46] 2025-10-24 15:18:46,776 [wrapper] Pilot exit status: 0
[2025-10-24 17:18:46] 2025-10-24 15:18:46,784 [wrapper] pandaids: 6854794261
[2025-10-24 17:18:46] 2025-10-24 15:18:46,803 [wrapper] cleanup supervisor_pilot 3379281 3358440
[2025-10-24 17:18:46] 2025-10-24 15:18:46,805 [wrapper] Test setup, not cleaning
[2025-10-24 17:18:46] 2025-10-24 15:18:46,807 [wrapper] apfmon messages muted
[2025-10-24 17:18:46] 2025-10-24 15:18:46,809 [wrapper] ==== wrapper stdout END ====
[2025-10-24 17:18:46] 2025-10-24 15:18:46,812 [wrapper] ==== wrapper stderr END ====
[2025-10-24 17:18:46]  *** Error codes and diagnostics ***
[2025-10-24 17:18:46]     "exeErrorCode": 0,
[2025-10-24 17:18:46]     "exeErrorDiag": "",
[2025-10-24 17:18:46]     "pilotErrorCode": 0,
[2025-10-24 17:18:46]     "pilotErrorDiag": "",
[2025-10-24 17:18:46]  *** Listing of results directory ***
[2025-10-24 17:18:46] total 438868
[2025-10-24 17:18:46] -rw-r--r-- 1 boinc boinc    557409 Oct 23 18:24 pilot3.tar.gz
[2025-10-24 17:18:46] -rw-r--r-- 1 boinc boinc      5112 Oct 23 19:11 queuedata.json
[2025-10-24 17:18:46] -rwx------ 1 boinc boinc     36292 Oct 23 19:14 runpilot2-wrapper.sh
[2025-10-24 17:18:46] -rw-r--r-- 1 boinc boinc       100 Oct 24 15:46 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-24 17:18:46] -rwxr-xr-x 1 boinc boinc      7986 Oct 24 15:46 run_atlas
[2025-10-24 17:18:46] -rw-r--r-- 1 boinc boinc       105 Oct 24 15:46 job.xml
[2025-10-24 17:18:46] -rw-r--r-- 2 boinc boinc 231259271 Oct 24 15:46 EVNT.46771634._004313.pool.root.1
[2025-10-24 17:18:46] -rw-r--r-- 2 boinc boinc    569688 Oct 24 15:46 input.tar.gz
[2025-10-24 17:18:46] -rw-r--r-- 2 boinc boinc     15120 Oct 24 15:46 start_atlas.sh
[2025-10-24 17:18:46] drwxrwx--x 2 boinc boinc      4096 Oct 24 15:46 shared
[2025-10-24 17:18:46] -rw-r--r-- 1 boinc boinc         0 Oct 24 15:46 boinc_setup_complete
[2025-10-24 17:18:46] -rw-r--r-- 1 boinc boinc      6441 Oct 24 15:46 init_data.xml
[2025-10-24 17:18:46] -rw-r--r-- 1 boinc boinc         0 Oct 24 15:46 boinc_lockfile
[2025-10-24 17:18:46] -rw-r--r-- 1 boinc boinc      2561 Oct 24 15:46 pandaJob.out
[2025-10-24 17:18:46] -rw------- 1 boinc boinc    978596 Oct 24 15:46 agis_schedconf.cvmfs.json
[2025-10-24 17:18:46] -rw------- 1 boinc boinc   1560772 Oct 24 15:46 agis_ddmendpoints.agis.ALL.json
[2025-10-24 17:18:46] drwx------ 5 boinc boinc      4096 Oct 24 15:46 pilot3
[2025-10-24 17:18:46] -rw------- 1 boinc boinc 212090344 Oct 24 17:17 HITS.46771637._108807.pool.root.1
[2025-10-24 17:18:46] -rw-r--r-- 1 boinc boinc       529 Oct 24 17:17 boinc_task_state.xml
[2025-10-24 17:18:46] -rw------- 1 boinc boinc        95 Oct 24 17:17 pilot_heartbeat.json
[2025-10-24 17:18:46] -rw------- 1 boinc boinc      1022 Oct 24 17:18 memory_monitor_summary.json
[2025-10-24 17:18:46] -rw------- 1 boinc boinc    271710 Oct 24 17:18 log.46771637._108807.job.log.tgz.1
[2025-10-24 17:18:46] -rw------- 1 boinc boinc      7767 Oct 24 17:18 heartbeat.json
[2025-10-24 17:18:46] -rw-r--r-- 1 boinc boinc      8192 Oct 24 17:18 boinc_mmap_file
[2025-10-24 17:18:46] -rw-r--r-- 1 boinc boinc        27 Oct 24 17:18 wrapper_checkpoint.txt
[2025-10-24 17:18:46] -rw------- 1 boinc boinc       747 Oct 24 17:18 pilotlog.txt
[2025-10-24 17:18:46] -rw------- 1 boinc boinc    805351 Oct 24 17:18 log.46771637._108807.job.log.1
[2025-10-24 17:18:46] -rw------- 1 boinc boinc       357 Oct 24 17:18 output.list
[2025-10-24 17:18:46] -rw-r--r-- 1 boinc boinc       620 Oct 24 17:18 runtime_log
[2025-10-24 17:18:46] -rw------- 1 boinc boinc   1095680 Oct 24 17:18 result.tar.gz
[2025-10-24 17:18:46] -rw------- 1 boinc boinc       661 Oct 24 17:18 upfLDmI4DW8n9Rq4apOajLDm4fhM0noT9bVof3QYDmxojMDmsE26Zm.diag
[2025-10-24 17:18:46] -rw-r--r-- 1 boinc boinc      8787 Oct 24 17:18 runtime_log.err
[2025-10-24 17:18:46] -rw-r--r-- 1 boinc boinc     21734 Oct 24 17:18 stderr.txt
[2025-10-24 17:18:46] HITS file was successfully produced:
[2025-10-24 17:18:46] -rw------- 1 boinc boinc 212090344 Oct 24 17:17 shared/HITS.pool.root.1
[2025-10-24 17:18:46]  *** Contents of shared directory: ***
[2025-10-24 17:18:46] total 434612
[2025-10-24 17:18:46] -rw-r--r-- 2 boinc boinc 231259271 Oct 24 15:46 ATLAS.root_0
[2025-10-24 17:18:46] -rw-r--r-- 2 boinc boinc    569688 Oct 24 15:46 input.tar.gz
[2025-10-24 17:18:46] -rw-r--r-- 2 boinc boinc     15120 Oct 24 15:46 start_atlas.sh
[2025-10-24 17:18:46] -rw------- 1 boinc boinc 212090344 Oct 24 17:17 HITS.pool.root.1
[2025-10-24 17:18:46] -rw------- 1 boinc boinc   1095680 Oct 24 17:18 result.tar.gz
17:18:48 (3354721): run_atlas exited; CPU time 15876.848150
17:18:48 (3354721): called boinc_finish(0)

</stderr_txt>
]]>

©2025 CERN