Stderr output

<core_client_version>8.2.5</core_client_version>
<![CDATA[
<stderr_txt>
01:20:49 (121340): wrapper (7.7.26015): starting
01:20:49 (121340): wrapper: running run_atlas (--nthreads 12)
[2025-10-24 01:20:49] Arguments: --nthreads 12
[2025-10-24 01:20:49] Threads: 12
[2025-10-24 01:20:49] Checking for CVMFS
[2025-10-24 01:20:49] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-24 01:20:49] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-24 01:20:49] Running cvmfs_config stat atlas.cern.ch
[2025-10-24 01:20:49] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-24 01:20:49] 2.13.2.0 2884831 4828 61912 152065 3 57 5379327 6144001 1927 130560 0 25222118 99.998 178916 316 http://s1fnal-cvmfs.openhtc.io:8080/cvmfs/atlas.cern.ch DIRECT 1
[2025-10-24 01:20:49] CVMFS is ok
[2025-10-24 01:20:49] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-24 01:20:49] Small home clusters do not require a local http proxy but it is suggested if
[2025-10-24 01:20:49] more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
[2025-10-24 01:20:49] Further information can be found at the LHC@home message board.
[2025-10-24 01:20:49] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-24 01:20:49] Checking for apptainer binary...
[2025-10-24 01:20:49] apptainer is not installed, using version from CVMFS
[2025-10-24 01:20:49] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-24 01:20:51] XeonFire
[2025-10-24 01:20:51] apptainer works
[2025-10-24 01:20:51] Set ATHENA_PROC_NUMBER=12
[2025-10-24 01:20:51] Set ATHENA_CORE_NUMBER=12
[2025-10-24 01:20:51] Starting ATLAS job with PandaID=6854480526
[2025-10-24 01:20:51] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/var/lib/boinc-client/slots/2 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-24 02:13:16]  *** The last 200 lines of the pilot log: ***
[2025-10-24 02:13:16]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-10-24 02:13:16]  replicas=None
[2025-10-24 02:13:16]  scope=mc23_13p6TeV
[2025-10-24 02:13:16]  status=None
[2025-10-24 02:13:16]  status_code=0
[2025-10-24 02:13:16]  storage_token=
[2025-10-24 02:13:16]  surl=/var/lib/boinc-client/slots/2/PanDA_Pilot-6854480526/log.46771637._104034.job.log.tgz.1
[2025-10-24 02:13:16]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/b2/82/log.46771637._104034.job.log.tgz.1
[2025-10-24 02:13:16]  workdir=None
[2025-10-24 02:13:16] ]
[2025-10-24 02:13:16] 2025-10-24 07:12:32,209 | INFO     | transferring file log.46771637._104034.job.log.tgz.1 from /var/lib/boinc-client/slots/2/PanDA_Pilot-6854480526/log.46771637._104034.job.log.tgz.1 to /var/lib/boinc
[2025-10-24 02:13:16] 2025-10-24 07:12:32,209 | INFO     | executing command: /usr/bin/env mv /var/lib/boinc-client/slots/2/PanDA_Pilot-6854480526/log.46771637._104034.job.log.tgz.1 /var/lib/boinc-client/slots/2/log.467716
[2025-10-24 02:13:16] 2025-10-24 07:12:32,226 | INFO     | adding to output.list: log.46771637._104034.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/b2/82/log.46771637._104034.job.log.tg
[2025-10-24 02:13:16] 2025-10-24 07:12:32,227 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-10-24 02:13:16] 2025-10-24 07:12:32,227 | INFO     | summary of transferred files:
[2025-10-24 02:13:16] 2025-10-24 07:12:32,227 | INFO     |  -- lfn=log.46771637._104034.job.log.tgz.1, status_code=0, status=transferred
[2025-10-24 02:13:16] 2025-10-24 07:12:32,227 | INFO     | stage-out finished correctly
[2025-10-24 02:13:16] 2025-10-24 07:12:33,109 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-10-24 02:13:16] 2025-10-24 07:12:33,214 | INFO     | job 6854480526 has state=finished
[2025-10-24 02:13:16] 2025-10-24 07:12:33,214 | INFO     | preparing for final server update for job 6854480526 in state='finished'
[2025-10-24 02:13:16] 2025-10-24 07:12:33,585 | INFO     | PID=125423 has CPU usage=9.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-10-24 02:13:16] 2025-10-24 07:12:33,585 | INFO     | .. there are 4 such processes running
[2025-10-24 02:13:16] 2025-10-24 07:12:33,714 | INFO     | sent prmon JSON dictionary to logstash server (urllib method)
[2025-10-24 02:13:16] 2025-10-24 07:12:33,714 | INFO     | this job has now completed (state=finished)
[2025-10-24 02:13:16] 2025-10-24 07:12:33,714 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-10-24 02:13:16] 2025-10-24 07:12:33,714 | INFO     | log transfer has been attempted: DONE
[2025-10-24 02:13:16] 2025-10-24 07:12:33,715 | INFO     | job 6854480526 has finished - writing final server update
[2025-10-24 02:13:16] 2025-10-24 07:12:33,715 | INFO     | total number of processed events: 400 (read)
[2025-10-24 02:13:16] 2025-10-24 07:12:33,716 | INFO     | executing command: lscpu
[2025-10-24 02:13:16] 2025-10-24 07:12:33,761 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-10-24 02:13:16] 2025-10-24 07:12:34,586 | INFO     | time since job start (3088s) is within the limit (172800.0s)
[2025-10-24 02:13:16] 2025-10-24 07:12:36,525 | WARNING  | process 136577 can no longer be monitored (due to stat problems) - aborting
[2025-10-24 02:13:16] 2025-10-24 07:12:36,525 | INFO     | using path: /var/lib/boinc-client/slots/2/PanDA_Pilot-6854480526/memory_monitor_summary.json (trf name=prmon)
[2025-10-24 02:13:16] 2025-10-24 07:12:36,592 | INFO     | time since job start (3090s) is within the limit (172800.0s)
[2025-10-24 02:13:16] 2025-10-24 07:12:36,775 | INFO     | number of running child processes to parent process 136577: 1
[2025-10-24 02:13:16] 2025-10-24 07:12:36,775 | INFO     | maximum number of monitored processes: 6
[2025-10-24 02:13:16] 2025-10-24 07:12:37,938 | INFO     | CPU arch script returned: x86-64-v3
[2025-10-24 02:13:16] 2025-10-24 07:12:37,958 | INFO     | found 44 cores (22 cores per socket, 2 sockets) HT, CPU MHz: 2087.647954545454
[2025-10-24 02:13:16] 2025-10-24 07:12:37,978 | INFO     | using path: /var/lib/boinc-client/slots/2/PanDA_Pilot-6854480526/memory_monitor_summary.json (trf name=prmon)
[2025-10-24 02:13:16] 2025-10-24 07:12:37,979 | INFO     | extracted standard info from prmon json
[2025-10-24 02:13:16] 2025-10-24 07:12:37,979 | INFO     | extracted standard memory fields from prmon json
[2025-10-24 02:13:16] 2025-10-24 07:12:37,979 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-24 02:13:16] 2025-10-24 07:12:37,979 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-24 02:13:16] 2025-10-24 07:12:37,979 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-24 02:13:16] 2025-10-24 07:12:37,981 | INFO     | fitting pss+swap vs Time
[2025-10-24 02:13:16] 2025-10-24 07:12:37,982 | INFO     | sum of square deviations: 26400495.0
[2025-10-24 02:13:16] 2025-10-24 07:12:37,982 | INFO     | sum of deviations: 1128892962.0
[2025-10-24 02:13:16] 2025-10-24 07:12:37,982 | INFO     | mean x: 1761288508.5
[2025-10-24 02:13:16] 2025-10-24 07:12:37,982 | INFO     | mean y: 2768364.3181818184
[2025-10-24 02:13:16] 2025-10-24 07:12:37,982 | INFO     | -- intersect: -75310448349.88081
[2025-10-24 02:13:16] 2025-10-24 07:12:37,983 | INFO     | intersect: -75310448349.88081
[2025-10-24 02:13:16] 2025-10-24 07:12:37,983 | INFO     | chi2: 0.04777087113726322
[2025-10-24 02:13:16] 2025-10-24 07:12:37,983 | INFO     | -- intersect: -75310448349.88081
[2025-10-24 02:13:16] 2025-10-24 07:12:37,983 | INFO     | current memory leak: 42.76 B/s (using 44 data points, chi2=0.05)
[2025-10-24 02:13:16] 2025-10-24 07:12:37,984 | INFO     | could have reported an average CPU frequency of 2020 MHz (5 samples)
[2025-10-24 02:13:16] 2025-10-24 07:12:37,984 | INFO     | ..............................
[2025-10-24 02:13:16] 2025-10-24 07:12:37,984 | INFO     | . Timing measurements:
[2025-10-24 02:13:16] 2025-10-24 07:12:37,984 | INFO     | . get job = 0 s
[2025-10-24 02:13:16] 2025-10-24 07:12:37,984 | INFO     | . initial setup = 4 s
[2025-10-24 02:13:16] 2025-10-24 07:12:37,984 | INFO     | . payload setup = 6 s
[2025-10-24 02:13:16] 2025-10-24 07:12:37,985 | INFO     | . stage-in = 0 s
[2025-10-24 02:13:16] 2025-10-24 07:12:37,985 | INFO     | . payload execution = 3059 s
[2025-10-24 02:13:16] 2025-10-24 07:12:37,985 | INFO     | . stage-out = 0 s
[2025-10-24 02:13:16] 2025-10-24 07:12:37,985 | INFO     | . log creation = 0 s
[2025-10-24 02:13:16] 2025-10-24 07:12:37,985 | INFO     | ..............................
[2025-10-24 02:13:16] 2025-10-24 07:12:38,062 | INFO     | 
[2025-10-24 02:13:16] 2025-10-24 07:12:38,062 | INFO     | job summary report
[2025-10-24 02:13:16] 2025-10-24 07:12:38,062 | INFO     | --------------------------------------------------
[2025-10-24 02:13:16] 2025-10-24 07:12:38,062 | INFO     | PanDA job id: 6854480526
[2025-10-24 02:13:16] 2025-10-24 07:12:38,063 | INFO     | task id: 46771637
[2025-10-24 02:13:16] 2025-10-24 07:12:38,063 | INFO     | errors: (none)
[2025-10-24 02:13:16] 2025-10-24 07:12:38,063 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-24 02:13:16] 2025-10-24 07:12:38,063 | INFO     | pilot state: finished 
[2025-10-24 02:13:16] 2025-10-24 07:12:38,063 | INFO     | transexitcode: 0
[2025-10-24 02:13:16] 2025-10-24 07:12:38,063 | INFO     | exeerrorcode: 0
[2025-10-24 02:13:16] 2025-10-24 07:12:38,063 | INFO     | exeerrordiag: 
[2025-10-24 02:13:16] 2025-10-24 07:12:38,063 | INFO     | exitcode: 0
[2025-10-24 02:13:16] 2025-10-24 07:12:38,063 | INFO     | exitmsg: OK
[2025-10-24 02:13:16] 2025-10-24 07:12:38,064 | INFO     | cpuconsumptiontime: 31516 s
[2025-10-24 02:13:16] 2025-10-24 07:12:38,064 | INFO     | nevents: 400
[2025-10-24 02:13:16] 2025-10-24 07:12:38,064 | INFO     | neventsw: 0
[2025-10-24 02:13:16] 2025-10-24 07:12:38,064 | INFO     | pid: 136577
[2025-10-24 02:13:16] 2025-10-24 07:12:38,064 | INFO     | pgrp: 136577
[2025-10-24 02:13:16] 2025-10-24 07:12:38,064 | INFO     | corecount: 12
[2025-10-24 02:13:16] 2025-10-24 07:12:38,064 | INFO     | event service: False
[2025-10-24 02:13:16] 2025-10-24 07:12:38,064 | INFO     | sizes: {0: 2348888, 5: 2349150, 11: 2349206, 3069: 2374486, 3070: 2383553, 3071: 2383553, 3076: 2383907}
[2025-10-24 02:13:16] 2025-10-24 07:12:38,064 | INFO     | --------------------------------------------------
[2025-10-24 02:13:16] 2025-10-24 07:12:38,065 | INFO     | 
[2025-10-24 02:13:16] 2025-10-24 07:12:38,065 | INFO     | executing command: ls -lF /var/lib/boinc-client/slots/2
[2025-10-24 02:13:16] 2025-10-24 07:12:38,090 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-24 02:13:16] 2025-10-24 07:12:38,090 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-24 02:13:16] 2025-10-24 07:12:38,090 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-24 02:13:16] 2025-10-24 07:12:38,090 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-24 02:13:16] 2025-10-24 07:12:38,090 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-24 02:13:16] 2025-10-24 07:12:38,090 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-24 02:13:16] 2025-10-24 07:12:38,090 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-24 02:13:16] 2025-10-24 07:12:38,090 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-24 02:13:16] 2025-10-24 07:12:38,090 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-24 02:13:16] 2025-10-24 07:12:38,091 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-24 02:13:16] 2025-10-24 07:12:38,091 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-24 02:13:16] 2025-10-24 07:12:38,091 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-24 02:13:16] 2025-10-24 07:12:38,091 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-24 02:13:16] 2025-10-24 07:12:38,091 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-24 02:13:16] 2025-10-24 07:12:38,091 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-24 02:13:16] 2025-10-24 07:12:38,091 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-24 02:13:16] 2025-10-24 07:12:38,091 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-24 02:13:16] 2025-10-24 07:12:38,091 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-24 02:13:16] 2025-10-24 07:12:38,091 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-24 02:13:16] 2025-10-24 07:12:38,091 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-24 02:13:16] 2025-10-24 07:12:38,091 | INFO     | job 6854480526 has completed (purged errors)
[2025-10-24 02:13:16] 2025-10-24 07:12:38,091 | INFO     | overall cleanup function is called
[2025-10-24 02:13:16] 2025-10-24 07:12:39,099 | INFO     | --- collectZombieJob: --- 10, [136577]
[2025-10-24 02:13:16] 2025-10-24 07:12:39,099 | INFO     | zombie collector waiting for pid 136577
[2025-10-24 02:13:16] 2025-10-24 07:12:39,099 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-24 02:13:16] 2025-10-24 07:12:39,100 | INFO     | collected zombie processes
[2025-10-24 02:13:16] 2025-10-24 07:12:39,100 | INFO     | will attempt to kill all subprocesses of pid=136577
[2025-10-24 02:13:16] 2025-10-24 07:12:39,484 | INFO     | process IDs to be killed: [136577] (in reverse order)
[2025-10-24 02:13:16] 2025-10-24 07:12:39,590 | WARNING  | found no corresponding commands to process id(s)
[2025-10-24 02:13:16] 2025-10-24 07:12:39,590 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-24 02:13:16] 2025-10-24 07:12:39,597 | INFO     | did not find any defunct processes belonging to 136577
[2025-10-24 02:13:16] 2025-10-24 07:12:39,603 | INFO     | did not find any defunct processes belonging to 136577
[2025-10-24 02:13:16] 2025-10-24 07:12:39,603 | INFO     | ready for new job
[2025-10-24 02:13:16] 2025-10-24 07:12:39,604 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-24 02:13:16] 2025-10-24 07:12:39,605 | INFO     | ***************************************
[2025-10-24 02:13:16] 2025-10-24 07:12:39,605 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-24 02:13:16] 2025-10-24 07:12:39,605 | INFO     | ***************************************
[2025-10-24 02:13:16] 2025-10-24 07:12:39,605 | INFO     | 
[2025-10-24 02:13:16] 2025-10-24 07:12:39,608 | INFO     | architecture information:
[2025-10-24 02:13:16] 2025-10-24 07:12:39,609 | INFO     | executing command: cat /etc/os-release
[2025-10-24 02:13:16] 2025-10-24 07:12:39,623 | INFO     | cat /etc/os-release:
[2025-10-24 02:13:16] NAME="CentOS Linux"
[2025-10-24 02:13:16] VERSION="7 (Core)"
[2025-10-24 02:13:16] ID="centos"
[2025-10-24 02:13:16] ID_LIKE="rhel fedora"
[2025-10-24 02:13:16] VERSION_ID="7"
[2025-10-24 02:13:16] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-24 02:13:16] ANSI_COLOR="0;31"
[2025-10-24 02:13:16] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-24 02:13:16] HOME_URL="https://www.centos.org/"
[2025-10-24 02:13:16] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-24 02:13:16] 
[2025-10-24 02:13:16] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-24 02:13:16] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-24 02:13:16] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-24 02:13:16] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-24 02:13:16] 
[2025-10-24 02:13:16] 2025-10-24 07:12:39,624 | INFO     | ***************************************
[2025-10-24 02:13:16] 2025-10-24 07:12:40,127 | INFO     | executing command: df -mP /var/lib/boinc-client/slots/2
[2025-10-24 02:13:16] 2025-10-24 07:12:40,144 | INFO     | sufficient remaining disk space (1807441985536 B)
[2025-10-24 02:13:16] 2025-10-24 07:12:40,144 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-24 02:13:16] 2025-10-24 07:12:40,145 | INFO     | current server update state: UPDATING_FINAL
[2025-10-24 02:13:16] 2025-10-24 07:12:40,145 | INFO     | update_server=False
[2025-10-24 02:13:16] 2025-10-24 07:12:40,145 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-24 02:13:16] 2025-10-24 07:12:40,145 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-24 02:13:16] 2025-10-24 07:12:40,283 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-24 02:13:16] 2025-10-24 07:12:40,283 | INFO     | aborting loop
[2025-10-24 02:13:16] 2025-10-24 07:12:40,302 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-24 02:13:16] 2025-10-24 07:12:40,471 | INFO     | all payload control threads have been joined
[2025-10-24 02:13:16] 2025-10-24 07:12:40,665 | INFO     | all data control threads have been joined
[2025-10-24 02:13:16] 2025-10-24 07:12:40,824 | INFO     | all job control threads have been joined
[2025-10-24 02:13:16] 2025-10-24 07:12:41,150 | INFO     | [job] retrieve thread has finished
[2025-10-24 02:13:16] 2025-10-24 07:12:41,288 | INFO     | [job] job monitor thread has finished
[2025-10-24 02:13:16] 2025-10-24 07:12:41,466 | INFO     | [payload] execute_payloads thread has finished
[2025-10-24 02:13:16] 2025-10-24 07:12:41,476 | INFO     | [payload] control thread has finished
[2025-10-24 02:13:16] 2025-10-24 07:12:41,578 | INFO     | [job] validate thread has finished
[2025-10-24 02:13:16] 2025-10-24 07:12:41,671 | INFO     | [data] control thread has finished
[2025-10-24 02:13:16] 2025-10-24 07:12:41,829 | INFO     | [job] control thread has finished
[2025-10-24 02:13:16] 2025-10-24 07:12:41,838 | INFO     | [job] create_data_payload thread has finished
[2025-10-24 02:13:16] 2025-10-24 07:12:41,884 | INFO     | [data] copytool_in thread has finished
[2025-10-24 02:13:16] 2025-10-24 07:12:41,970 | INFO     | [payload] validate_pre thread has finished
[2025-10-24 02:13:16] 2025-10-24 07:12:42,160 | INFO     | [payload] validate_post thread has finished
[2025-10-24 02:13:16] 2025-10-24 07:12:42,216 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-24 02:13:16] 2025-10-24 07:12:42,308 | INFO     | [data] copytool_out thread has finished
[2025-10-24 02:13:16] 2025-10-24 07:12:42,586 | INFO     | [payload] failed_post thread has finished
[2025-10-24 02:13:16] 2025-10-24 07:12:43,072 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-24 02:13:16] 2025-10-24 07:12:44,077 | INFO     | [job] queue monitor thread has finished
[2025-10-24 02:13:16] 2025-10-24 07:12:44,151 | INFO     | [data] queue_monitor thread has finished
[2025-10-24 02:13:16] 2025-10-24 07:13:10,055 | INFO     | PID=125423 has CPU usage=4.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-10-24 02:13:16] 2025-10-24 07:13:10,055 | INFO     | .. there are 4 such processes running
[2025-10-24 02:13:16] 2025-10-24 07:13:10,055 | INFO     | found 0 job(s) in 20 queues
[2025-10-24 02:13:16] 2025-10-24 07:13:10,056 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-24 02:13:16] 2025-10-24 07:13:10,056 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-24 02:13:16] 2025-10-24 07:13:10,403 | INFO     | [monitor] cgroup control has ended
[2025-10-24 02:13:16] 2025-10-24 07:13:11,295 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 132617805203264)>', '<ExcThread(monitor, started 132617408063232)>']
[2025-10-24 02:13:16] 2025-10-24 07:13:12,066 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-24 02:13:16] 2025-10-24 07:13:12,066 | INFO     | [monitor] control thread has ended
[2025-10-24 02:13:16] 2025-10-24 07:13:16,320 | INFO     | all workflow threads have been joined
[2025-10-24 02:13:16] 2025-10-24 07:13:16,320 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-24 02:13:16] 2025-10-24 07:13:16,321 | INFO     | traces error code: 0
[2025-10-24 02:13:16] 2025-10-24 07:13:16,321 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-24 02:13:16] 2025-10-24 07:13:16,427 [wrapper] ==== pilot stdout END ====
[2025-10-24 02:13:16] 2025-10-24 07:13:16,431 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-24 02:13:16] 2025-10-24 07:13:16,434 [wrapper] pilotpid: 125423
[2025-10-24 02:13:16] 2025-10-24 07:13:16,437 [wrapper] Pilot exit status: 0
[2025-10-24 02:13:16] 2025-10-24 07:13:16,450 [wrapper] pandaids: 6854480526
[2025-10-24 02:13:16] 2025-10-24 07:13:16,504 [wrapper] cleanup supervisor_pilot  220345 125424
[2025-10-24 02:13:16] 2025-10-24 07:13:16,507 [wrapper] Test setup, not cleaning
[2025-10-24 02:13:16] 2025-10-24 07:13:16,510 [wrapper] apfmon messages muted
[2025-10-24 02:13:16] 2025-10-24 07:13:16,514 [wrapper] ==== wrapper stdout END ====
[2025-10-24 02:13:16] 2025-10-24 07:13:16,517 [wrapper] ==== wrapper stderr END ====
[2025-10-24 02:13:16]  *** Error codes and diagnostics ***
[2025-10-24 02:13:16]     "exeErrorCode": 0,
[2025-10-24 02:13:16]     "exeErrorDiag": "",
[2025-10-24 02:13:16]     "pilotErrorCode": 0,
[2025-10-24 02:13:16]     "pilotErrorDiag": "",
[2025-10-24 02:13:16]  *** Listing of results directory ***
[2025-10-24 02:13:16] total 431832
[2025-10-24 02:13:16] -rw-r--r-- 1 mark mark    557409 Oct 23 05:20 pilot3.tar.gz
[2025-10-24 02:13:16] -rwx------ 1 mark mark     36292 Oct 23 05:31 runpilot2-wrapper.sh
[2025-10-24 02:13:16] -rw-r--r-- 1 mark mark      5112 Oct 23 05:31 queuedata.json
[2025-10-24 02:13:16] -rw-rw-r-- 1 mark mark       100 Oct 24 01:20 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-24 02:13:16] -rwxr-xr-x 1 mark mark      7986 Oct 24 01:20 run_atlas
[2025-10-24 02:13:16] -rw-rw-r-- 1 mark mark       105 Oct 24 01:20 job.xml
[2025-10-24 02:13:16] -rw-r--r-- 2 mark mark     15120 Oct 24 01:20 start_atlas.sh
[2025-10-24 02:13:16] drwxrwx--x 2 mark mark      4096 Oct 24 01:20 shared
[2025-10-24 02:13:16] -rw-r--r-- 2 mark mark    569679 Oct 24 01:20 input.tar.gz
[2025-10-24 02:13:16] -rw-r--r-- 2 mark mark 229868666 Oct 24 01:20 EVNT.46771634._002624.pool.root.1
[2025-10-24 02:13:16] -rw-rw-r-- 1 mark mark      9229 Oct 24 01:20 init_data.xml
[2025-10-24 02:13:16] -rw-rw-r-- 1 mark mark         0 Oct 24 01:20 boinc_setup_complete
[2025-10-24 02:13:16] -rw-rw-r-- 1 mark mark         0 Oct 24 01:20 boinc_lockfile
[2025-10-24 02:13:16] -rw-rw-r-- 1 mark mark      2560 Oct 24 01:20 pandaJob.out
[2025-10-24 02:13:16] -rw------- 1 mark mark    978566 Oct 24 01:21 agis_schedconf.cvmfs.json
[2025-10-24 02:13:16] -rw------- 1 mark mark   1560740 Oct 24 01:21 agis_ddmendpoints.agis.ALL.json
[2025-10-24 02:13:16] drwx------ 5 mark mark      4096 Oct 24 01:21 pilot3
[2025-10-24 02:13:16] -rw------- 1 mark mark 206713858 Oct 24 02:12 HITS.46771637._104034.pool.root.1
[2025-10-24 02:13:16] -rw-rw-r-- 1 mark mark       529 Oct 24 02:12 boinc_task_state.xml
[2025-10-24 02:13:16] -rw------- 1 mark mark        95 Oct 24 02:12 pilot_heartbeat.json
[2025-10-24 02:13:16] -rw------- 1 mark mark      1034 Oct 24 02:12 memory_monitor_summary.json
[2025-10-24 02:13:16] -rw------- 1 mark mark    375412 Oct 24 02:12 log.46771637._104034.job.log.tgz.1
[2025-10-24 02:13:16] -rw------- 1 mark mark      7787 Oct 24 02:12 heartbeat.json
[2025-10-24 02:13:16] -rw-rw-r-- 1 mark mark      8192 Oct 24 02:13 boinc_mmap_file
[2025-10-24 02:13:16] -rw-rw-r-- 1 mark mark        27 Oct 24 02:13 wrapper_checkpoint.txt
[2025-10-24 02:13:16] -rw------- 1 mark mark      4831 Oct 24 02:13 pilotlog.txt
[2025-10-24 02:13:16] -rw------- 1 mark mark    472738 Oct 24 02:13 log.46771637._104034.job.log.1
[2025-10-24 02:13:16] -rw------- 1 mark mark       357 Oct 24 02:13 output.list
[2025-10-24 02:13:16] -rw-rw-r-- 1 mark mark       620 Oct 24 02:13 runtime_log
[2025-10-24 02:13:16] -rw------- 1 mark mark    870400 Oct 24 02:13 result.tar.gz
[2025-10-24 02:13:16] -rw-rw-r-- 1 mark mark      8759 Oct 24 02:13 runtime_log.err
[2025-10-24 02:13:16] -rw------- 1 mark mark       645 Oct 24 02:13 dVsKDmmm7V8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDm9U8NDmubquRm.diag
[2025-10-24 02:13:16] -rw-rw-r-- 1 mark mark     22056 Oct 24 02:13 stderr.txt
[2025-10-24 02:13:16] HITS file was successfully produced:
[2025-10-24 02:13:16] -rw------- 1 mark mark 206713858 Oct 24 02:12 shared/HITS.pool.root.1
[2025-10-24 02:13:16]  *** Contents of shared directory: ***
[2025-10-24 02:13:16] total 427792
[2025-10-24 02:13:16] -rw-r--r-- 2 mark mark     15120 Oct 24 01:20 start_atlas.sh
[2025-10-24 02:13:16] -rw-r--r-- 2 mark mark    569679 Oct 24 01:20 input.tar.gz
[2025-10-24 02:13:16] -rw-r--r-- 2 mark mark 229868666 Oct 24 01:20 ATLAS.root_0
[2025-10-24 02:13:16] -rw------- 1 mark mark 206713858 Oct 24 02:12 HITS.pool.root.1
[2025-10-24 02:13:16] -rw------- 1 mark mark    870400 Oct 24 02:13 result.tar.gz
02:13:17 (121340): run_atlas exited; CPU time 31619.114661
02:13:17 (121340): called boinc_finish(0)

</stderr_txt>
]]>

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