Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
08:10:25 (3212075): wrapper (7.7.26015): starting
08:10:25 (3212075): wrapper: running run_atlas (--nthreads 3)
[2025-10-24 08:10:25] Arguments: --nthreads 3
[2025-10-24 08:10:25] Threads: 3
[2025-10-24 08:10:25] Checking for CVMFS
[2025-10-24 08:10:26] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-24 08:10:26] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-24 08:10:26] Running cvmfs_config stat atlas.cern.ch
[2025-10-24 08:10:26] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-24 08:10:26] 2.9.2.0 1719162 4790 82300 152064 2 57 5040081 36864001 0 130560 0 3607208 99.989 175103 1028 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-10-24 08:10:26] CVMFS is ok
[2025-10-24 08:10:26] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-24 08:10:26] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-24 08:10:26] Further information can be found at the LHC@home message board.
[2025-10-24 08:10:26] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-24 08:10:26] Checking for apptainer binary...
[2025-10-24 08:10:26] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-24 08:10:26] Running /usr/bin/apptainer --version
[2025-10-24 08:10:26] apptainer version 1.4.1-1.1
[2025-10-24 08:10:26] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-24 08:10:26] cosA127a
[2025-10-24 08:10:26] apptainer works
[2025-10-24 08:10:26] Set ATHENA_PROC_NUMBER=3
[2025-10-24 08:10:26] Set ATHENA_CORE_NUMBER=3
[2025-10-24 08:10:26] Starting ATLAS job with PandaID=6854454574
[2025-10-24 08:10:26] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-24 09:41:43]  *** The last 200 lines of the pilot log: ***
[2025-10-24 09:41:43]  mtime=0
[2025-10-24 09:41:43]  protocol_id=None
[2025-10-24 09:41:43]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-10-24 09:41:43]  replicas=None
[2025-10-24 09:41:43]  scope=mc23_13p6TeV
[2025-10-24 09:41:43]  status=None
[2025-10-24 09:41:43]  status_code=0
[2025-10-24 09:41:43]  storage_token=
[2025-10-24 09:41:43]  surl=/local/data/boinc/slots/0/PanDA_Pilot-6854454574/log.46771637._103823.job.log.tgz.1
[2025-10-24 09:41:43]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/13/6c/log.46771637._103823.job.log.tgz.1
[2025-10-24 09:41:43]  workdir=None
[2025-10-24 09:41:43] ]
[2025-10-24 09:41:43] 2025-10-24 07:41:01,397 | INFO     | transferring file log.46771637._103823.job.log.tgz.1 from /local/data/boinc/slots/0/PanDA_Pilot-6854454574/log.46771637._103823.job.log.tgz.1 to /local/data/boinc/
[2025-10-24 09:41:43] 2025-10-24 07:41:01,397 | INFO     | executing command: /usr/bin/env mv /local/data/boinc/slots/0/PanDA_Pilot-6854454574/log.46771637._103823.job.log.tgz.1 /local/data/boinc/slots/0/log.46771637._1038
[2025-10-24 09:41:43] 2025-10-24 07:41:01,409 | INFO     | adding to output.list: log.46771637._103823.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/13/6c/log.46771637._103823.job.log.tg
[2025-10-24 09:41:43] 2025-10-24 07:41:01,409 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-10-24 09:41:43] 2025-10-24 07:41:01,410 | INFO     | summary of transferred files:
[2025-10-24 09:41:43] 2025-10-24 07:41:01,410 | INFO     |  -- lfn=log.46771637._103823.job.log.tgz.1, status_code=0, status=transferred
[2025-10-24 09:41:43] 2025-10-24 07:41:01,410 | INFO     | stage-out finished correctly
[2025-10-24 09:41:43] 2025-10-24 07:41:02,587 | INFO     | time since job start (5431s) is within the limit (172800.0s)
[2025-10-24 09:41:43] 2025-10-24 07:41:02,587 | INFO     | 5431s have passed since pilot start - server update state is 'RUNNING'
[2025-10-24 09:41:43] 2025-10-24 07:41:03,503 | INFO     | monitor loop #416: job 0:6854454574 is in state 'finished'
[2025-10-24 09:41:43] 2025-10-24 07:41:03,503 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-24 09:41:43] 2025-10-24 07:41:04,325 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-10-24 09:41:43] 2025-10-24 07:41:04,593 | INFO     | time since job start (5433s) is within the limit (172800.0s)
[2025-10-24 09:41:43] 2025-10-24 07:41:04,859 | INFO     | job 6854454574 has state=finished
[2025-10-24 09:41:43] 2025-10-24 07:41:04,859 | INFO     | preparing for final server update for job 6854454574 in state='finished'
[2025-10-24 09:41:43] 2025-10-24 07:41:04,859 | INFO     | this job has now completed (state=finished)
[2025-10-24 09:41:43] 2025-10-24 07:41:04,859 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-10-24 09:41:43] 2025-10-24 07:41:04,859 | INFO     | log transfer has been attempted: DONE
[2025-10-24 09:41:43] 2025-10-24 07:41:04,859 | INFO     | job 6854454574 has finished - writing final server update
[2025-10-24 09:41:43] 2025-10-24 07:41:04,860 | INFO     | total number of processed events: 400 (read)
[2025-10-24 09:41:43] 2025-10-24 07:41:04,860 | INFO     | executing command: lscpu
[2025-10-24 09:41:43] 2025-10-24 07:41:04,872 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-10-24 09:41:43] 2025-10-24 07:41:06,005 | INFO     | monitor loop #417: job 0:6854454574 is in state 'finished'
[2025-10-24 09:41:43] 2025-10-24 07:41:06,005 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-24 09:41:43] 2025-10-24 07:41:06,598 | INFO     | time since job start (5435s) is within the limit (172800.0s)
[2025-10-24 09:41:43] 2025-10-24 07:41:07,101 | INFO     | CPU arch script returned: x86-64-v3
[2025-10-24 09:41:43] 2025-10-24 07:41:07,102 | INFO     | found 6 cores (6 cores per socket, 1 socket) HT, CPU MHz: 3552.713916666666
[2025-10-24 09:41:43] 2025-10-24 07:41:07,103 | INFO     | using path: /local/data/boinc/slots/0/PanDA_Pilot-6854454574/memory_monitor_summary.json (trf name=prmon)
[2025-10-24 09:41:43] 2025-10-24 07:41:07,103 | INFO     | extracted standard info from prmon json
[2025-10-24 09:41:43] 2025-10-24 07:41:07,103 | INFO     | extracted standard memory fields from prmon json
[2025-10-24 09:41:43] 2025-10-24 07:41:07,103 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-24 09:41:43] 2025-10-24 07:41:07,103 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-24 09:41:43] 2025-10-24 07:41:07,103 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-24 09:41:43] 2025-10-24 07:41:07,104 | INFO     | fitting pss+swap vs Time
[2025-10-24 09:41:43] 2025-10-24 07:41:07,104 | INFO     | sum of square deviations: 170944600.5
[2025-10-24 09:41:43] 2025-10-24 07:41:07,104 | INFO     | sum of deviations: -5169548181.499999
[2025-10-24 09:41:43] 2025-10-24 07:41:07,104 | INFO     | mean x: 1761289026.5
[2025-10-24 09:41:43] 2025-10-24 07:41:07,104 | INFO     | mean y: 2439943.5975609757
[2025-10-24 09:41:43] 2025-10-24 07:41:07,104 | INFO     | -- intersect: 53265710368.09383
[2025-10-24 09:41:43] 2025-10-24 07:41:07,104 | INFO     | intersect: 53265710368.09383
[2025-10-24 09:41:43] 2025-10-24 07:41:07,104 | INFO     | chi2: 0.025121741892998806
[2025-10-24 09:41:43] 2025-10-24 07:41:07,104 | INFO     | -- intersect: 53265710368.09383
[2025-10-24 09:41:43] 2025-10-24 07:41:07,105 | INFO     | current memory leak: -30.24 B/s (using 82 data points, chi2=0.03)
[2025-10-24 09:41:43] 2025-10-24 07:41:07,105 | INFO     | could have reported an average CPU frequency of 3928 MHz (7 samples)
[2025-10-24 09:41:43] 2025-10-24 07:41:07,105 | INFO     | ..............................
[2025-10-24 09:41:43] 2025-10-24 07:41:07,105 | INFO     | . Timing measurements:
[2025-10-24 09:41:43] 2025-10-24 07:41:07,105 | INFO     | . get job = 0 s
[2025-10-24 09:41:43] 2025-10-24 07:41:07,105 | INFO     | . initial setup = 1 s
[2025-10-24 09:41:43] 2025-10-24 07:41:07,105 | INFO     | . payload setup = 2 s
[2025-10-24 09:41:43] 2025-10-24 07:41:07,105 | INFO     | . stage-in = 0 s
[2025-10-24 09:41:43] 2025-10-24 07:41:07,105 | INFO     | . payload execution = 5408 s
[2025-10-24 09:41:43] 2025-10-24 07:41:07,105 | INFO     | . stage-out = 0 s
[2025-10-24 09:41:43] 2025-10-24 07:41:07,105 | INFO     | . log creation = 0 s
[2025-10-24 09:41:43] 2025-10-24 07:41:07,105 | INFO     | ..............................
[2025-10-24 09:41:43] 2025-10-24 07:41:07,136 | INFO     | 
[2025-10-24 09:41:43] 2025-10-24 07:41:07,136 | INFO     | job summary report
[2025-10-24 09:41:43] 2025-10-24 07:41:07,136 | INFO     | --------------------------------------------------
[2025-10-24 09:41:43] 2025-10-24 07:41:07,136 | INFO     | PanDA job id: 6854454574
[2025-10-24 09:41:43] 2025-10-24 07:41:07,136 | INFO     | task id: 46771637
[2025-10-24 09:41:43] 2025-10-24 07:41:07,136 | INFO     | errors: (none)
[2025-10-24 09:41:43] 2025-10-24 07:41:07,136 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-24 09:41:43] 2025-10-24 07:41:07,136 | INFO     | pilot state: finished 
[2025-10-24 09:41:43] 2025-10-24 07:41:07,136 | INFO     | transexitcode: 0
[2025-10-24 09:41:43] 2025-10-24 07:41:07,136 | INFO     | exeerrorcode: 0
[2025-10-24 09:41:43] 2025-10-24 07:41:07,136 | INFO     | exeerrordiag: 
[2025-10-24 09:41:43] 2025-10-24 07:41:07,136 | INFO     | exitcode: 0
[2025-10-24 09:41:43] 2025-10-24 07:41:07,136 | INFO     | exitmsg: OK
[2025-10-24 09:41:43] 2025-10-24 07:41:07,136 | INFO     | cpuconsumptiontime: 15640 s
[2025-10-24 09:41:43] 2025-10-24 07:41:07,136 | INFO     | nevents: 400
[2025-10-24 09:41:43] 2025-10-24 07:41:07,136 | INFO     | neventsw: 0
[2025-10-24 09:41:43] 2025-10-24 07:41:07,136 | INFO     | pid: 3222242
[2025-10-24 09:41:43] 2025-10-24 07:41:07,136 | INFO     | pgrp: 3222242
[2025-10-24 09:41:43] 2025-10-24 07:41:07,136 | INFO     | corecount: 3
[2025-10-24 09:41:43] 2025-10-24 07:41:07,136 | INFO     | event service: False
[2025-10-24 09:41:43] 2025-10-24 07:41:07,137 | INFO     | sizes: {0: 2348934, 2: 2349196, 10: 2349224, 5414: 2375954, 5416: 2384958, 5419: 2385014, 5422: 2385336}
[2025-10-24 09:41:43] 2025-10-24 07:41:07,137 | INFO     | --------------------------------------------------
[2025-10-24 09:41:43] 2025-10-24 07:41:07,137 | INFO     | 
[2025-10-24 09:41:43] 2025-10-24 07:41:07,137 | INFO     | executing command: ls -lF /local/data/boinc/slots/0
[2025-10-24 09:41:43] 2025-10-24 07:41:07,149 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-24 09:41:43] 2025-10-24 07:41:07,149 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-24 09:41:43] 2025-10-24 07:41:07,149 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-24 09:41:43] 2025-10-24 07:41:07,149 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-24 09:41:43] 2025-10-24 07:41:07,149 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-24 09:41:43] 2025-10-24 07:41:07,149 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-24 09:41:43] 2025-10-24 07:41:07,149 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-24 09:41:43] 2025-10-24 07:41:07,149 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-24 09:41:43] 2025-10-24 07:41:07,149 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-24 09:41:43] 2025-10-24 07:41:07,149 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-24 09:41:43] 2025-10-24 07:41:07,149 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-24 09:41:43] 2025-10-24 07:41:07,149 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-24 09:41:43] 2025-10-24 07:41:07,149 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-24 09:41:43] 2025-10-24 07:41:07,150 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-24 09:41:43] 2025-10-24 07:41:07,150 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-24 09:41:43] 2025-10-24 07:41:07,150 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-24 09:41:43] 2025-10-24 07:41:07,150 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-24 09:41:43] 2025-10-24 07:41:07,150 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-24 09:41:43] 2025-10-24 07:41:07,150 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-24 09:41:43] 2025-10-24 07:41:07,150 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-24 09:41:43] 2025-10-24 07:41:07,150 | INFO     | job 6854454574 has completed (purged errors)
[2025-10-24 09:41:43] 2025-10-24 07:41:07,150 | INFO     | overall cleanup function is called
[2025-10-24 09:41:43] 2025-10-24 07:41:08,156 | INFO     | --- collectZombieJob: --- 10, [3222242]
[2025-10-24 09:41:43] 2025-10-24 07:41:08,156 | INFO     | zombie collector waiting for pid 3222242
[2025-10-24 09:41:43] 2025-10-24 07:41:08,156 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-24 09:41:43] 2025-10-24 07:41:08,156 | INFO     | collected zombie processes
[2025-10-24 09:41:43] 2025-10-24 07:41:08,156 | INFO     | will attempt to kill all subprocesses of pid=3222242
[2025-10-24 09:41:43] 2025-10-24 07:41:08,207 | INFO     | process IDs to be killed: [3222242] (in reverse order)
[2025-10-24 09:41:43] 2025-10-24 07:41:08,234 | WARNING  | found no corresponding commands to process id(s)
[2025-10-24 09:41:43] 2025-10-24 07:41:08,234 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-24 09:41:43] 2025-10-24 07:41:08,236 | INFO     | did not find any defunct processes belonging to 3222242
[2025-10-24 09:41:43] 2025-10-24 07:41:08,237 | INFO     | did not find any defunct processes belonging to 3222242
[2025-10-24 09:41:43] 2025-10-24 07:41:08,237 | INFO     | ready for new job
[2025-10-24 09:41:43] 2025-10-24 07:41:08,237 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-24 09:41:43] 2025-10-24 07:41:08,238 | INFO     | ***************************************
[2025-10-24 09:41:43] 2025-10-24 07:41:08,238 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-24 09:41:43] 2025-10-24 07:41:08,238 | INFO     | ***************************************
[2025-10-24 09:41:43] 2025-10-24 07:41:08,238 | INFO     | 
[2025-10-24 09:41:43] 2025-10-24 07:41:08,238 | INFO     | architecture information:
[2025-10-24 09:41:43] 2025-10-24 07:41:08,239 | INFO     | executing command: cat /etc/os-release
[2025-10-24 09:41:43] 2025-10-24 07:41:08,247 | INFO     | cat /etc/os-release:
[2025-10-24 09:41:43] NAME="CentOS Linux"
[2025-10-24 09:41:43] VERSION="7 (Core)"
[2025-10-24 09:41:43] ID="centos"
[2025-10-24 09:41:43] ID_LIKE="rhel fedora"
[2025-10-24 09:41:43] VERSION_ID="7"
[2025-10-24 09:41:43] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-24 09:41:43] ANSI_COLOR="0;31"
[2025-10-24 09:41:43] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-24 09:41:43] HOME_URL="https://www.centos.org/"
[2025-10-24 09:41:43] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-24 09:41:43] 
[2025-10-24 09:41:43] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-24 09:41:43] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-24 09:41:43] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-24 09:41:43] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-24 09:41:43] 
[2025-10-24 09:41:43] 2025-10-24 07:41:08,247 | INFO     | ***************************************
[2025-10-24 09:41:43] 2025-10-24 07:41:08,750 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-10-24 09:41:43] 2025-10-24 07:41:08,759 | INFO     | sufficient remaining disk space (354601140224 B)
[2025-10-24 09:41:43] 2025-10-24 07:41:08,759 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-24 09:41:43] 2025-10-24 07:41:08,759 | INFO     | current server update state: UPDATING_FINAL
[2025-10-24 09:41:43] 2025-10-24 07:41:08,759 | INFO     | update_server=False
[2025-10-24 09:41:43] 2025-10-24 07:41:08,759 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-24 09:41:43] 2025-10-24 07:41:08,759 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-24 09:41:43] 2025-10-24 07:41:08,878 | INFO     | all data control threads have been joined
[2025-10-24 09:41:43] 2025-10-24 07:41:09,450 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-24 09:41:43] 2025-10-24 07:41:09,513 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-24 09:41:43] 2025-10-24 07:41:09,514 | INFO     | aborting loop
[2025-10-24 09:41:43] 2025-10-24 07:41:09,574 | INFO     | all payload control threads have been joined
[2025-10-24 09:41:43] 2025-10-24 07:41:09,764 | INFO     | [job] retrieve thread has finished
[2025-10-24 09:41:43] 2025-10-24 07:41:09,764 | INFO     | [job] queue monitor thread has finished
[2025-10-24 09:41:43] 2025-10-24 07:41:09,883 | INFO     | [data] control thread has finished
[2025-10-24 09:41:43] 2025-10-24 07:41:09,916 | INFO     | [payload] failed_post thread has finished
[2025-10-24 09:41:43] 2025-10-24 07:41:09,958 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-24 09:41:43] 2025-10-24 07:41:10,162 | INFO     | [data] copytool_in thread has finished
[2025-10-24 09:41:43] 2025-10-24 07:41:10,359 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-24 09:41:43] 2025-10-24 07:41:10,384 | INFO     | all job control threads have been joined
[2025-10-24 09:41:43] 2025-10-24 07:41:10,452 | INFO     | [payload] validate_post thread has finished
[2025-10-24 09:41:43] 2025-10-24 07:41:10,519 | INFO     | [job] job monitor thread has finished
[2025-10-24 09:41:43] 2025-10-24 07:41:10,580 | INFO     | [payload] control thread has finished
[2025-10-24 09:41:43] 2025-10-24 07:41:10,663 | INFO     | [job] create_data_payload thread has finished
[2025-10-24 09:41:43] 2025-10-24 07:41:10,663 | INFO     | [job] validate thread has finished
[2025-10-24 09:41:43] 2025-10-24 07:41:10,830 | INFO     | [payload] validate_pre thread has finished
[2025-10-24 09:41:43] 2025-10-24 07:41:10,862 | INFO     | [payload] execute_payloads thread has finished
[2025-10-24 09:41:43] 2025-10-24 07:41:11,390 | INFO     | [job] control thread has finished
[2025-10-24 09:41:43] 2025-10-24 07:41:11,455 | INFO     | [data] copytool_out thread has finished
[2025-10-24 09:41:43] 2025-10-24 07:41:14,364 | INFO     | [data] queue_monitor thread has finished
[2025-10-24 09:41:43] 2025-10-24 07:41:37,691 | INFO     | [monitor] cgroup control has ended
[2025-10-24 09:41:43] 2025-10-24 07:41:38,456 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139824809117504)>', '<ExcThread(monitor, started 139824321255168)>']
[2025-10-24 09:41:43] 2025-10-24 07:41:39,741 | INFO     | PID=3215798 has CPU usage=1.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-24 09:41:43] 2025-10-24 07:41:39,741 | INFO     | found 0 job(s) in 20 queues
[2025-10-24 09:41:43] 2025-10-24 07:41:39,741 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-24 09:41:43] 2025-10-24 07:41:39,741 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-24 09:41:43] 2025-10-24 07:41:39,741 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-24 09:41:43] 2025-10-24 07:41:39,741 | INFO     | [monitor] control thread has ended
[2025-10-24 09:41:43] 2025-10-24 07:41:43,481 | INFO     | all workflow threads have been joined
[2025-10-24 09:41:43] 2025-10-24 07:41:43,481 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-24 09:41:43] 2025-10-24 07:41:43,481 | INFO     | traces error code: 0
[2025-10-24 09:41:43] 2025-10-24 07:41:43,482 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-24 09:41:43] 2025-10-24 07:41:43,529 [wrapper] ==== pilot stdout END ====
[2025-10-24 09:41:43] 2025-10-24 07:41:43,532 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-24 09:41:43] 2025-10-24 07:41:43,534 [wrapper] pilotpid: 3215798
[2025-10-24 09:41:43] 2025-10-24 07:41:43,536 [wrapper] Pilot exit status: 0
[2025-10-24 09:41:43] 2025-10-24 07:41:43,544 [wrapper] pandaids: 6854454574
[2025-10-24 09:41:43] 2025-10-24 07:41:43,562 [wrapper] cleanup supervisor_pilot 3236670 3215799
[2025-10-24 09:41:43] 2025-10-24 07:41:43,564 [wrapper] Test setup, not cleaning
[2025-10-24 09:41:43] 2025-10-24 07:41:43,567 [wrapper] apfmon messages muted
[2025-10-24 09:41:43] 2025-10-24 07:41:43,569 [wrapper] ==== wrapper stdout END ====
[2025-10-24 09:41:43] 2025-10-24 07:41:43,571 [wrapper] ==== wrapper stderr END ====
[2025-10-24 09:41:43]  *** Error codes and diagnostics ***
[2025-10-24 09:41:43]     "exeErrorCode": 0,
[2025-10-24 09:41:43]     "exeErrorDiag": "",
[2025-10-24 09:41:43]     "pilotErrorCode": 0,
[2025-10-24 09:41:43]     "pilotErrorDiag": "",
[2025-10-24 09:41:43]  *** Listing of results directory ***
[2025-10-24 09:41:43] total 435904
[2025-10-24 09:41:43] -rw-r--r-- 1 boinc boinc      5112 Oct 23 12:20 queuedata.json
[2025-10-24 09:41:43] -rw-r--r-- 1 boinc boinc    557409 Oct 23 12:20 pilot3.tar.gz
[2025-10-24 09:41:43] -rwx------ 1 boinc boinc     36292 Oct 23 12:21 runpilot2-wrapper.sh
[2025-10-24 09:41:43] -rw-r--r-- 1 boinc boinc       100 Oct 24 08:10 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-24 09:41:43] -rwxr-xr-x 1 boinc boinc      7986 Oct 24 08:10 run_atlas
[2025-10-24 09:41:43] -rw-r--r-- 1 boinc boinc       105 Oct 24 08:10 job.xml
[2025-10-24 09:41:43] -rw-r--r-- 2 boinc boinc 230177648 Oct 24 08:10 EVNT.46771634._004111.pool.root.1
[2025-10-24 09:41:43] -rw-r--r-- 2 boinc boinc    569674 Oct 24 08:10 input.tar.gz
[2025-10-24 09:41:43] -rw-r--r-- 2 boinc boinc     15120 Oct 24 08:10 start_atlas.sh
[2025-10-24 09:41:43] drwxrwx--x 2 boinc boinc      4096 Oct 24 08:10 shared
[2025-10-24 09:41:43] -rw-r--r-- 1 boinc boinc         0 Oct 24 08:10 boinc_setup_complete
[2025-10-24 09:41:43] -rw-r--r-- 1 boinc boinc      6441 Oct 24 08:10 init_data.xml
[2025-10-24 09:41:43] -rw-r--r-- 1 boinc boinc         0 Oct 24 08:10 boinc_lockfile
[2025-10-24 09:41:43] -rw-r--r-- 1 boinc boinc      2560 Oct 24 08:10 pandaJob.out
[2025-10-24 09:41:43] -rw------- 1 boinc boinc    978574 Oct 24 08:10 agis_schedconf.cvmfs.json
[2025-10-24 09:41:43] -rw------- 1 boinc boinc   1560740 Oct 24 08:10 agis_ddmendpoints.agis.ALL.json
[2025-10-24 09:41:43] drwx------ 5 boinc boinc      4096 Oct 24 08:10 pilot3
[2025-10-24 09:41:43] -rw------- 1 boinc boinc 210166615 Oct 24 09:40 HITS.46771637._103823.pool.root.1
[2025-10-24 09:41:43] -rw-r--r-- 1 boinc boinc       529 Oct 24 09:40 boinc_task_state.xml
[2025-10-24 09:41:43] -rw------- 1 boinc boinc      1021 Oct 24 09:40 memory_monitor_summary.json
[2025-10-24 09:41:43] -rw------- 1 boinc boinc    267028 Oct 24 09:41 log.46771637._103823.job.log.tgz.1
[2025-10-24 09:41:43] -rw------- 1 boinc boinc        95 Oct 24 09:41 pilot_heartbeat.json
[2025-10-24 09:41:43] -rw------- 1 boinc boinc      7767 Oct 24 09:41 heartbeat.json
[2025-10-24 09:41:43] -rw-r--r-- 1 boinc boinc        27 Oct 24 09:41 wrapper_checkpoint.txt
[2025-10-24 09:41:43] -rw-r--r-- 1 boinc boinc      8192 Oct 24 09:41 boinc_mmap_file
[2025-10-24 09:41:43] -rw------- 1 boinc boinc      4752 Oct 24 09:41 pilotlog.txt
[2025-10-24 09:41:43] -rw------- 1 boinc boinc    794083 Oct 24 09:41 log.46771637._103823.job.log.1
[2025-10-24 09:41:43] -rw------- 1 boinc boinc       357 Oct 24 09:41 output.list
[2025-10-24 09:41:43] -rw-r--r-- 1 boinc boinc       620 Oct 24 09:41 runtime_log
[2025-10-24 09:41:43] -rw------- 1 boinc boinc   1075200 Oct 24 09:41 result.tar.gz
[2025-10-24 09:41:43] -rw------- 1 boinc boinc       661 Oct 24 09:41 tO5KDmhc7V8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDm6T8NDmrHpaRo.diag
[2025-10-24 09:41:43] -rw-r--r-- 1 boinc boinc      8787 Oct 24 09:41 runtime_log.err
[2025-10-24 09:41:43] -rw-r--r-- 1 boinc boinc     21711 Oct 24 09:41 stderr.txt
[2025-10-24 09:41:43] HITS file was successfully produced:
[2025-10-24 09:41:43] -rw------- 1 boinc boinc 210166615 Oct 24 09:40 shared/HITS.pool.root.1
[2025-10-24 09:41:43]  *** Contents of shared directory: ***
[2025-10-24 09:41:43] total 431660
[2025-10-24 09:41:43] -rw-r--r-- 2 boinc boinc 230177648 Oct 24 08:10 ATLAS.root_0
[2025-10-24 09:41:43] -rw-r--r-- 2 boinc boinc    569674 Oct 24 08:10 input.tar.gz
[2025-10-24 09:41:43] -rw-r--r-- 2 boinc boinc     15120 Oct 24 08:10 start_atlas.sh
[2025-10-24 09:41:43] -rw------- 1 boinc boinc 210166615 Oct 24 09:40 HITS.pool.root.1
[2025-10-24 09:41:43] -rw------- 1 boinc boinc   1075200 Oct 24 09:41 result.tar.gz
09:41:44 (3212075): run_atlas exited; CPU time 15667.263891
09:41:44 (3212075): called boinc_finish(0)

</stderr_txt>
]]>

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